Molecular Mechanisms of Cell Cycle Control in the Mouse Y1 Adrenal Cell Line

2004 ◽  
Vol 30 (4) ◽  
pp. 503-509 ◽  
Author(s):  
Érico T. Costa ◽  
Fábio L. Forti ◽  
Kátia M. Rocha ◽  
Miriam S. Moraes ◽  
Hugo A. Armelin
2003 ◽  
Vol 61 (3) ◽  
pp. 268-274 ◽  
Author(s):  
K�tia M. Rocha ◽  
F�bio L. Forti ◽  
Ana P. Lepique ◽  
Hugo A. Armelin

2009 ◽  
Vol 12 (01) ◽  
pp. 21-43 ◽  
Author(s):  
BINHUA TANG ◽  
LI HE ◽  
QING JING ◽  
BAIRONG SHEN

The loss of cell cycle control is often associated with cancers and other different diseases. With the accumulation of omics data, the network for molecule interactions in the cell cycle process will become much clearer. The identification of the crucial modules in a giant network and investigation of inherent control relations are very important to the understanding of the molecular mechanisms of diseases for new drug design. The paper proposes novel techniques in analyzing such core regulatory modules based on network and system control theories. We initially define the degree of participation (DOP) and the rate of activity (ROA) for indentifying core module components, and then the diverse contribution elasticity functions for quantifying pairwise regulatory or control activities between those components, thus facilitating the decomposition of expanded core modules and the formation of feedback loops within the control schema. Motivated by the inherent regulatory mechanisms, we expound a kind of multiphase nonlinear adaptive control algorithm in repelling abnormal genetic mutations, which directly and indirectly impact cancer development in biological cells and organs. Experimental predictions are also elucidated within the work, helping those in vivo design, verification and performance evaluation.


2000 ◽  
Vol 23 (3) ◽  
pp. 689-694
Author(s):  
E.N. Miyaji ◽  
R.T. Johnson ◽  
C.S. Downes ◽  
E. Eveno ◽  
M. Mezzina ◽  
...  

Using a positive selection system for isolating DNA replication and repair related mutants, we isolated a clone from a rat kangaroo cell line (PtK2) that has increased sensitivity to UV light. Characterization of this clone indicated normal post-replication repair after UV irradiation, and normal removal rates of cyclobutane pyrimidine dimers and pyrimidine(6-4)pyrimidone photoproducts by excision repair. However, this cell line has decreased ability to make early incisions on damaged DNA, possibly indicating a defect in preferential repair of actively transcribed genes, and a slower cell proliferation rate, including a longer S-phase. This phenotype reinforces the present notion that control of key mechanisms in cell metabolism, such as cell cycle control, repair, transcription and cell death, can be linked.


2019 ◽  
Vol 37 (15_suppl) ◽  
pp. e15670-e15670
Author(s):  
Jiazhou Ye ◽  
Yinguang Wang ◽  
Rong Liang ◽  
Xue Wu ◽  
Yang Shao ◽  
...  

e15670 Background: Development of hepatocellular carcinoma (HCC) is a complex process with accumulations of polygene abnormalities and multi-pathway misregulation. Hepatitis B virus (HBV) exposure can cause liver damage and promote hepatocarcinogenesis via various biological effects. We aimed to investigate the molecular mechanisms underlying the etiology of HBV-related HCC development, and provide new insights into novel molecular targets. Methods: 84 HBV-positive HCC patients from Guangxi Province, South China, who underwent hepatic resection, were enrolled in this study. Genomic alterations were analyzed in pair-matched tumor and adjacent normal tissue using a hybridization capture-based next-generation sequencing (NGS) assay targeting 422 cancer-relevant genes. Results: In total, 691 somatic mutations, 166 copy number variations and 10 gene fusions were detected in 81 (96.4%) of 84 tumor samples. The most commonly mutated gene is TP53 in this cohort (84% of the patients), which is much higher than its frequency in the reported overall HCC patients. TERT promoter has somatic mutations in 32% of the patients, reactivation of which has been implicated in multiple cancer types. Dysfunction in the cell cycle control pathway (TP53, RB1, CCND1, CDKN2A and CCNE1) was dominant, followed by PI3K/AKT cascade (PIK3CA, AKT3, MTOR, TSC1 and TSC2), while genes of WNT signaling pathway (CTNNB1, APC and AXIN2) were mutated at a lower frequency. In addition, 69 variants in 25 DNA damage repair (DDR) genes were identified in 37 (45.7%) patients. Patients with DDR mutations had a higher tumor mutation burden (TMB) than those without DDR mutations. Conclusions: This study revealed a unique genomic landscape of HBV-related HCC. Besides TP53 being the highest mutated gene, a significant fraction of patients was identified with TERT promoter mutations, suggesting that TERT may play a role in HBV-related hepatocarcinogenesis as a novel molecular marker. Furthermore, the most common biological processes affected by HBV status in HCC were cell cycle control, PI3K/AKT and WNT signaling pathways. The possible synergistic effects of HBV in hepatocarcinogenesis warrant further investigations.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 4393-4393
Author(s):  
Edgar G. Rizzatti ◽  
Helena Mora-Jensen ◽  
Elinor Lee ◽  
Yuji Miura ◽  
Raymond Lai ◽  
...  

Abstract Mantle cell lymphoma (MCL), characterized by a t(11;14) translocation that results in up-regulation of cyclin D1, is incurable with standard chemotherapy. Recent phase II studies have shown that bortezomib (BZM), an inhibitor of the proteasome, can induce responses in about 50% of pre-treated MCL patients. However, the molecular mechanisms that mediate either chemosensitivity or resistance to BZM in MCL remain largely unknown. In this study, we used a panel of MCL cell lines to investigate molecular mechanisms of response to BZM. In 11 MCL cell lines we found a bimodal pattern of chemosensitivity to BZM; the resistant group, REC-1, Mino, and NCEB-1, had an IC50>10nM (median 12.9 nM), while the sensitive group, Granta-519, JVM-2, Jeko-1, HBL-2, UPN1, SP-53, SP-49, and Z-138, had an IC50<10nM (median 5.9nM). No correlation between BZM resistance and p53 mutations was apparent, arguing against a role for this common chemotherapy resistance mechanism. To test whether the differences in sensitivity to BZM might be mediated by drug export mechanisms we measured P-gp activity using the rhodamine efflux assay. We found that more than 50% of the REC-1 (resistant), SP-53, and SP-49 cells (both sensitive) excluded the rhodamine dye, while all other cell lines showed only minimal or no activity, arguing against a role of P-gp in BZM resistance. To determine whether high proteasome activity or reduced sensitivity of the proteasome to inhibition could cause resistance to BZM we quantified proteasome activity by measuring the cleavage of the labeled substrate LLVY-AMC. Basal proteasome activity was comparable except in the sensitive cell line JVM-2, which had an activity 71% higher than the second highest; dose dependent inhibition was similar in all cell lines. BZM can interfere with components of the NFkB pathway, and this effect has been proposed to mediate cytotoxicity in MCL. We measured the relative activation of the NFkB pathway by quantifying p50, p52, p65, c-Rel and Rel-B nuclear factors with an ELISA assay. Cell lines with high and low expressions of NFkB nuclear factors were equally sensitive, arguing against a major role for this pathway in determining sensitivity to BZM. Heat shock proteins (Hsp) have been reported to confer resistance to BZM in lymphoid cell lines. However, in our hands, Hsp27, Hsp70 and Hsp90 were equally expressed between resistant and sensitive cells, and there was no consistent pattern of regulation of these proteins in response to BZM. Recently, NOXA has been reported to mediate BZM induced apoptosis. Indeed, all cell lines showed up-regulation of protein levels of NOXA when exposed to BZM in excess of their IC50 concentrations, suggesting that determinants of resistance are upstream of NOXA. Given the cardinal role of cyclin D1 in MCL, we hypothesized that effects on cell cycle control could be responsible for chemosensitivity. Upon BZM exposure sensitive cells were arrested in G2/M, whereas resistant cell lines either accumulated in G1 (Mino) or, at higher concentrations, underwent apoptosis without arresting in any specific phase. We conclude that BZM can overcome conventional mechanisms of drug resistance and that an effect on cell cycle control may determine BZM activity in MCL.


2020 ◽  
Vol 22 (Supplement_2) ◽  
pp. ii19-ii20
Author(s):  
Norihiko Saito ◽  
Sho Sato ◽  
Yu Hiramoto ◽  
Satoshi Fujita ◽  
Haruo Nakayama ◽  
...  

Abstract Oligodendrocyte lineage transcription factor 2 (OLIG2) promotes proliferation of normal neural stem/progenitor cells and glioma cells. However, the mechanisms underlying the regulation of OLIG2 remain largely unknown. Here, we show that a comprehensive analysis of the critical gene regulatory networks involving OLIG2 in glioma initiating cell (GIC) lines. In vitro differentiation studies showed that proneural GIC lines possess the potential to differentiate into astrocytic, neuronal, and oligodendrocytic lineages, whereas mesenchymal GICs exhibited limited potential for neural lineage differentiation following retinoic acid induction. We also showed that CDK2-mediated OLIG2 phosphorylation stabilizes OLIG2 protein from proteasomal degradation. Phosphorylated OLIG2 binds to the E-Box regions of p27 promoter and represses p27 transcription, which in turn activates CDK2 in positive feedback manner. CDK2-mediated OLIG2 phosphorylation promotes cell cycle progression, cell proliferation, and tumorigenesis. OLIG2 inhibition disrupted cell cycle control mechanism by decreasing CDK2 and elevating apoptosis-related molecules. Inhibition of CDK2 activity disrupted OLIG2-CDK2 interactions and attenuated OLIG2 protein stability. In addition, OLIG2-high glioma initiating cells are highly sensitive to CDK2 inhibitor treatment, indicating that OLIG2 can be a biomarker for personalized treatment for glioblastoma patients with CDK2 inhibitors. In conclusion, we have identified OLIG2-CDK2 interactions in glioma stem cells that can be targeted by CDK2 inhibitors and this may allow the selection of patients with high likelihood of responding to this therapy.


2002 ◽  
Vol 110 (suppl 5) ◽  
pp. 797-799 ◽  
Author(s):  
A Hartwig ◽  
M Asmuss ◽  
I Ehleben ◽  
U Herzer ◽  
D Kostelac ◽  
...  

2018 ◽  
Vol 92 (8) ◽  
Author(s):  
Lauren A. Gay ◽  
Sunantha Sethuraman ◽  
Merin Thomas ◽  
Peter C. Turner ◽  
Rolf Renne

ABSTRACTKaposi's sarcoma (KS) tumors are derived from endothelial cells and express Kaposi's sarcoma-associated herpesvirus (KSHV) microRNAs (miRNAs). Although miRNA targets have been identified in B cell lymphoma-derived cells and epithelial cells, little has been done to characterize the KSHV miRNA targetome in endothelial cells. A recent innovation in the identification of miRNA targetomes, cross-linking, ligation, and sequencing of hybrids (CLASH), unambiguously identifies miRNAs and their targets by ligating the two species while both species are still bound within the RNA-induced silencing complex (RISC). We developed a streamlined quick CLASH (qCLASH) protocol that requires a lower cell input than the original method and therefore has the potential to be used on patient biopsy samples. Additionally, we developed a fast-growing, KSHV-negative endothelial cell line derived from telomerase-immortalized vein endothelial long-term culture (TIVE-LTC) cells. qCLASH was performed on uninfected cells and cells infected with either wild-type KSHV or a mutant virus lacking miR-K12-11/11*. More than 1,400 cellular targets of KSHV miRNAs were identified. Many of the targets identified by qCLASH lacked a canonical seed sequence match. Additionally, most target regions in mRNAs originated from the coding DNA sequence (CDS) rather than the 3′ untranslated region (UTR). This set of genes includes some that were previously identified in B cells and some new genes that warrant further study. Pathway analysis of endothelial cell targets showed enrichment in cell cycle control, apoptosis, and glycolysis pathways, among others. Characterization of these new targets and the functional consequences of their repression will be important in furthering our understanding of the role of KSHV miRNAs in oncogenesis.IMPORTANCEKS lesions consist of endothelial cells latently infected with KSHV. Cells that make up these lesions express KSHV miRNAs. Identification of the targets of KSHV miRNAs will help us understand their role in viral oncogenesis. The cross-linking and sequencing of hybrids (CLASH) protocol is a method for unambiguously identifying miRNA targetomes. We developed a streamlined version of CLASH, called quick CLASH (qCLASH). qCLASH requires a lower initial input of cells than for its parent protocol. Additionally, a new fast-growing KSHV-negative endothelial cell line, named TIVE-EX-LTC cells, was established. qCLASH was performed on TIVE-EX-LTC cells latently infected with wild-type (WT) KSHV or a mutant virus lacking miR-K12-11/11*. A number of novel targets of KSHV miRNAs were identified, including targets of miR-K12-11, the ortholog of the cellular oncogenic miRNA (oncomiR) miR-155. Many of the miRNA targets were involved in processes related to oncogenesis, such as glycolysis, apoptosis, and cell cycle control.


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