Target Specificity of the CRISPR-Cas9 System in Arabidopsis thaliana, Oryza sativa, and Glycine max Genomes

The photoperiodic flowering pathway is crucial for plant development to synchronize internal signaling events and external seasons. One hundred years after photoperiodic flowering was discovered, the underlying core signaling network has been elucidated in model plants such as Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), and soybean (Glycine max). Here, we review the progress made in the photoperiodic flowering area and summarize previously accepted photoperiodic flowering models. We then introduce a new model based on daylength recognition by florigen. By determining the expression levels of the florigen gene, this model can assess the mechanism of daylength sensing and crop latitude adaptation. Future applications of this model under the constraints of global climate change are discussed.

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Stress induced MAPK genes show distinct pattern of codon usage in Arabidopsis thaliana, Glycine max and Oryza sativa

Bioinformation ◽

10.6026/97320630010436 ◽

2014 ◽

Vol 10 (7) ◽

pp. 436-442 ◽

Cited By ~ 4

Author(s):

H Surachandra Singha ◽

◽

Supriyo Chakraborty ◽

Himangshu Deka ◽

◽

...

Keyword(s):

Arabidopsis Thaliana ◽

Oryza Sativa ◽

Glycine Max ◽

Codon Usage ◽

Distinct Pattern

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Control of Winged Waterprimrose (Jussiaea decurrens) and Northern Jointvetch (Aeschynomene virginica) with Fungal Pathogens

Weed Science ◽

10.1017/s0043174500044477 ◽

1979 ◽

Vol 27 (5) ◽

pp. 497-501 ◽

Cited By ~ 46

Author(s):

C. D. Boyette ◽

G. E. Templeton ◽

R. J. Smith

Keyword(s):

Oryza Sativa ◽

Glycine Max ◽

Fungal Pathogens ◽

Liquid Culture ◽

Field Experiments ◽

Colletotrichum Gloeosporioides ◽

Pathogenic Fungus ◽

Field Tests ◽

Wide Range ◽

Growing Region

An indigenous, host-specific, pathogenic fungus that parasitizes winged waterprimrose [Jussiaea decurrens(Walt.) DC.] is endemic in the rice growing region of Arkansas. The fungus was isolated and identified asColletotrichum gloeosporioides(Penz.) Sacc. f.sp. jussiaeae(CGJ). It is highly specific for parasitism of winged waterprimrose and not parasitic on creeping waterprimrose (J. repensL. var.glabrescensKtze.), rice (Oryza sativaL.), soybeans [Glycine max(L.) Merr.], cotton (Gossypium hirsutumL.), or 4 other crops and 13 other weeds. The fungus was physiologically distinct from C.gloeosporioides(Penz.) Sacc. f. sp.aeschynomene(CGA), an endemic anthracnose pathogen of northern jointvetch[Aeschynomene virginica(L.) B.S.P.], as indicated by cross inoculations of both weeds. Culture in the laboratory and inoculation of winged waterprimrose in greenhouse, growth chamber and field experiments indicated that the pathogen was stable, specific, and virulent in a wide range of environments. The pathogen yielded large quantities of spores in liquid culture. It is suitable for control of winged waterprimrose. Winged waterprimrose and northern jointvetch were controlled in greenhouse and field tests by application of spore mixtures of CGJ and CGA at concentrations of 1 to 2 million spores/ml of each fungus in 94 L/ha of water; the fungi did not damage rice or nontarget crops.

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Arabidopsis thaliana and Oryza sativa receptor for activated C kinase 1 (RACK1) mediated signaling pathway shows hypersensitivity to oxidative stress

Plant Gene ◽

10.1016/j.plgene.2021.100299 ◽

2021 ◽

pp. 100299

Author(s):

Herman W.W. Fennell ◽

Hemayet Ullah ◽

Andre J. van Wijnen ◽

Eric A. Lewallen

Keyword(s):

Oxidative Stress ◽

Arabidopsis Thaliana ◽

Oryza Sativa ◽

Signaling Pathway

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Comparative genomic analysis reveals evolutionary and structural attributes of MCM gene family in Arabidopsis thaliana and Oryza sativa

Journal of Biotechnology ◽

10.1016/j.jbiotec.2020.12.010 ◽

2020 ◽

Author(s):

Sarvajeet Singh Gill ◽

Priyanka Chahar ◽

Anca Macovei ◽

Sandeep Yadav ◽

Abid A. Ansari ◽

...

Keyword(s):

Arabidopsis Thaliana ◽

Oryza Sativa ◽

Gene Family ◽

Genomic Analysis ◽

Comparative Genomic Analysis ◽

Comparative Genomic

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Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana

Genome ◽

10.1139/g03-106 ◽

2004 ◽

Vol 47 (1) ◽

pp. 141-155 ◽

Cited By ~ 38

Author(s):

H H Yan ◽

J Mudge ◽

D-J Kim ◽

R C Shoemaker ◽

D R Cook ◽

...

Keyword(s):

Arabidopsis Thaliana ◽

Glycine Max ◽

Medicago Truncatula ◽

Physical Mapping ◽

Large Scale ◽

Sequence Similarity ◽

Artificial Chromosome ◽

Bac Contig ◽

Cross Hybridization ◽

Bac Contigs

To gain insight into genomic relationships between soybean (Glycine max) and Medicago truncatula, eight groups of bacterial artificial chromosome (BAC) contigs, together spanning 2.60 million base pairs (Mb) in G. max and 1.56 Mb in M. truncatula, were compared through high-resolution physical mapping combined with sequence and hybridization analysis of low-copy BAC ends. Cross-hybridization among G. max and M. truncatula contigs uncovered microsynteny in six of the contig groups and extensive microsynteny in three. Between G. max homoeologous (within genome duplicate) contigs, 85% of coding and 75% of noncoding sequences were conserved at the level of cross-hybridization. By contrast, only 29% of sequences were conserved between G. max and M. truncatula, and some kilobase-scale rearrangements were also observed. Detailed restriction maps were constructed for 11 contigs from the three highly microsyntenic groups, and these maps suggested that sequence order was highly conserved between G. max duplicates and generally conserved between G. max and M. truncatula. One instance of homoeologous BAC contigs in M. truncatula was also observed and examined in detail. A sequence similarity search against the Arabidopsis thaliana genome sequence identified up to three microsyntenic regions in A. thaliana for each of two of the legume BAC contig groups. Together, these results confirm previous predictions of one recent genome-wide duplication in G. max and suggest that M. truncatula also experienced ancient large-scale genome duplications.Key words: Glycine max, Medicago truncatula, Arabidopsis thaliana, conserved microsynteny, genome duplication.

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Identification of the highly accumulated microRNA*s in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa)

Gene ◽

10.1016/j.gene.2012.11.015 ◽

2013 ◽

Vol 515 (1) ◽

pp. 123-127 ◽

Cited By ~ 11

Author(s):

Chaogang Shao ◽

Xiaoxia Ma ◽

Xiufang Xu ◽

Yijun Meng

Keyword(s):

Arabidopsis Thaliana ◽

Oryza Sativa

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Cultivation of Rice (Oryza sativa), Corn (Zea mays) and Soybean (Glycine max) Based on Land Suitability

Journal of Settlements and Spatial Planning ◽

10.24193/jssp.2020.1.02 ◽

2020 ◽

Vol 11 (1) ◽

pp. 9-16

Author(s):

Suntoro SUNTORO ◽

◽

Mujiyo MUJIYO ◽

Hery WIDIJANTO ◽

Ganjar HERDIANSYAH ◽

...

Keyword(s):

Zea Mays ◽

Oryza Sativa ◽

Glycine Max ◽

Land Suitability

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Cloning and Functional Identification of Phosphoethanolamine Methyltransferase in Soybean (Glycine max)

Frontiers in Plant Science ◽

10.3389/fpls.2021.612158 ◽

2021 ◽

Vol 12 ◽

Author(s):

Xiaomin Ji ◽

Xiaoyue Wu ◽

Wei Chen ◽

Qianhui Yuan ◽

Yixin Shen ◽

...

Keyword(s):

Arabidopsis Thaliana ◽

Glycine Max ◽

Stress Response ◽

Cell Metabolism ◽

Plant Stress ◽

Lipid Synthesis ◽

Normal Growth ◽

Functional Identification ◽

Short Root ◽

Response Elements

Phosphoethanolamine methyltransferase (PEAMT), a kind of S-adenosylmethionine-dependent methyltransferases, plays an essential role in many biological processes of plants, such as cell metabolism, stress response, and signal transduction. It is the key rate-limiting enzyme that catalyzes the three-step methylation of ethanolamine-phosphate (P-EA) to phosphocholine (P-Cho). To understand the unique function of PEAMT in soybean (Glycine max) lipid synthesis, we cloned two phosphoethanolamine methyltransferase genes GmPEAMT1 and GmPEAMT2, and performed functional identification. Both GmPEAMT1 and GmPEAMT2 contain two methyltransferase domains. GmPEAMT1 has the closest relationship with MtPEAMT2, and GmPEAMT2 has the closest relationship with CcPEAMT. GmPEAMT1 and GmPEAMT2 are located in the nucleus and endoplasmic reticulum. There are many light response elements and plant hormone response elements in the promoters of GmPEAMT1 and GmPEAMT2, indicating that they may be involved in plant stress response. The yeast cho2 opi3 mutant, co-expressing Arabidopsis thaliana phospholipid methyltransferase (PLMT) and GmPEAMT1 or GmPEAMT2, can restore normal growth, indicating that GmPEAMTs can catalyze the methylation of phosphoethanolamine to phosphate monomethylethanolamine. The heterologous expression of GmPEAMT1 and GmPEAMT2 can partially restore the short root phenotype of the Arabidopsis thaliana peamt1 mutant, suggesting GmPEAMTs have similar but different functions to AtPEAMT1.

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