Carbon-dependent growth, community structure, and methane oxidation performance of a soil-derived methanotrophic mixed culture

2020 ◽  
Author(s):  
Nadine Praeg ◽  
Iris Schachner ◽  
Lisa Schuster ◽  
Paul Illmer
Keyword(s):  
Mixed Culture ◽  
Heterotrophic Bacteria ◽  
Type I ◽  
Ch4 Oxidation ◽  
Feeding Experiments ◽  
Oxidation Performance ◽  
Dependent Growth ◽  
Global Carbon ◽  
Similar Soil

Abstract Soil-borne methane-oxidizing microorganisms act as a terrestrial methane (CH4) sink and are potentially useful in decreasing global CH4 emissions. Understanding the ecophysiology of methanotrophs is crucial for a thorough description of global carbon cycling. Here, we report the in situ balance of soils from abandoned landfills, meadows and wetlands, their capacities to produce and oxidize CH4 at laboratory-scale and the isolation of a soil-borne methanotrophic-heterotrophic mixed culture that was used for carbon (C1 and C2) feeding experiments. We showed that even with similar soil properties, the in situ CH4 balance depends on land-use. Different soils had different potentials to adapt to increased CH4 availability, leading to the highest CH4 oxidation capacities for landfill and wetland soils. The most efficient mixed culture isolated from thelandfill was dominated by the methanotrophs Methylobacter sp. and Methylosinus sp., which were accompanied by Variovorax sp. and Pseudomonas sp. and remained active in oxidizing CH4 when supplied with additional C-sources. The rations between type I and type II methanotrophs and between methanotrophic and heterotrophic bacteria changed when C-sources were altered. A significant effect of the application of the mixed culture on the CH4 oxidation of soils was established but the extent varied depending on soil type.

Feeding experiments of the seep-associated foraminifer Nonionellina labradorica with a marine methanotroph from the Arctic

2021 ◽  
Author(s):  
Christiane Schmidt ◽  
Geslin Emmanuelle ◽  
Bernhard Joan M. ◽  
LeKieffre Charlotte ◽  
Roberge Helene ◽  
...  
Keyword(s):  
Barents Sea ◽  
Feeding Habits ◽  
The Arctic ◽  
Type I ◽  
Intracytoplasmic Membrane ◽  
Organic Detritus ◽  
Feeding Experiments ◽  
Food Vacuoles ◽  
Species Specific

<p>Foraminifera on the seafloor are known to have species-specific feeding habits. Among those are deposit feeders, eating organic detritus and bacteria. Little is known about the feeding habits of foraminifera from Arctic seep environments. That is, in particular, of interest as variable δ<sup>13</sup>C values in the tests of foraminifera have been suggested to be partly linked with a diet rich in bacteria, themselves lighter in δ<sup>13</sup>C values. As there is little information on the ecology of the foraminifer <em>Nonionellina labradorica</em> (Dawson, 1860), this study examined feeding habits on bacteria and compared them to in situ collected specimens, using Transmission Electron microscopy (TEM). As bacterial food, the marine methane-oxidizing bacterium <em>Methyloprofundus sedimenti</em> was chosen, which is an important representative of methanotrophs in the marine environment near methane seeps. Sediment samples containing living N. labradorica specimens collected in close vicinity(approx. 5 m) from an active methane seep in Storfjordrenna, Barents Sea (382-m water depth).  We performed a feeding experiment on <em>N. labradorica </em>(n=17 specimen), which were incubated in the dark at in situ temperature. Specimens were fed at the beginning of the experiment, except the un-fed controls, and incubations terminated after 4, 8 and 20 h. After fixation in epoxy resin the ultrastructure of all specimens and their food vacuoles was observed and compared using a TEM. All examined specimens were living at the time of fixation, based on observation of intact mitochondrial membranes. In all specimens, inorganic detritus was preserved inside food vacuoles. Closer observation of food vacuoles also revealed that in addition to inorganic debris, such as clay, occasionally bacteria were visible. This led us to conclude that our <em>N. labradorica </em>can  generally be classified as a deposit feeder, which is rather a generalist than a specialist. Regarding uptake of <em>M. sedimenti</em>, the timing of the experimentation seemed to be critical. We did not observe methanotrophs preserved in the resin at the 4 and 8 h incubations, but found two putative methanotrophs near the apertural region after the 20-h incubation. After closer observation, we could identify one of those two putative specimen as the menthanothroph <em>M. sedimenti</em> near the foraminiferal aperture, based on presence of a typical type I stacked intracytoplasmic membrane (ICM) and storage granules (SC). We concluded that <em>N. labradorica</em> may ingest <em>M. sedimenti</em> via “untargeted grazing” in seeps. Further studies must examine the exact relationship between diet and δ<sup>13</sup>C in foraminiferal test on several different paleo-oceanographically relevant species.</p>

scholarly journals In Situ Hyperspectral Raman Imaging: A New Method to Investigate Sintering Processes of Ceramic Material at High-temperature

2019 ◽  
Vol 9 (7) ◽  
pp. 1310 ◽  
Author(s):  
Kerstin Hauke ◽  
Johannes Kehren ◽  
Nadine Böhme ◽  
Sinje Zimmer ◽  
Thorsten Geisler
Keyword(s):  
High Temperature ◽  
Raman Imaging ◽  
In Situ Studies ◽  
Kinetic Information ◽  
Novel Approach ◽  
In Situ Investigation ◽  
Dependent Growth ◽  
Micrometer Scale ◽  
Sintering Processes

In the last decades, Raman spectroscopy has become an important tool to identify and investigate minerals, gases, glasses, and organic material at room temperature. In combination with high-temperature and high-pressure devices, however, the in situ investigation of mineral transformation reactions and their kinetics is nowadays also possible. Here, we present a novel approach to in situ studies for the sintering process of silicate ceramics by hyperspectral Raman imaging. This imaging technique allows studying high-temperature solid-solid and/or solid-melt reactions spatially and temporally resolved, and opens up new avenues to study and visualize high-temperature sintering processes in multi-component systems. After describing in detail the methodology, the results of three application examples are presented and discussed. These experiments demonstrate the power of hyperspectral Raman imaging for in situ studies of the mechanism(s) of solid-solid or solid-melt reactions at high-temperature with a micrometer-scale resolution as well as to gain kinetic information from the temperature- and time-dependent growth and breakdown of minerals during isothermal or isochronal sintering.

Predation by three glacial opportunists on natural zooplankton communities

1986 ◽  
Vol 64 (1) ◽  
pp. 57-64 ◽  
Author(s):  
Redwood W. Nero ◽  
W. Gary Sprules
Keyword(s):  
Previous Survey ◽  
Clearance Rates ◽  
Mysis Relicta ◽  
Chydorus Sphaericus ◽  
Theoretical Comparison ◽  
Feeding Experiments ◽  
Predatory Impact ◽  
Limnocalanus Macrurus ◽  
Zooplankton Communities

We examine the influence of three glacial opportunist predators, Mysis relicta, Limnocalanus macrurus, and Senecella calanoides, on natural zooplankton communities of central Ontario through a series of feeding experiments in small enclosures (23.6 L). Estimates of in situ clearance rates by M. relicta match previously determined rates, with the following gradation of values: Asplanchna sp. > daphnids and bosminids > Epischura lacustris > large cyclopoids, Chydorus sphaericus and small Diaptomus sp. > L. macrurus > S. calanoides. Clearance rates by M. relicta are similar for all daphnids and bosminids. Hypolimnetic species like Daphnia longiremis and Eubosmina longispina are apparently eliminated by M. relicta, while similarly vulnerable species survive because they have an epilimnetic refuge from M. relicta. Limnocalanus macrurus and S. calanoides prey primarily on copepods, Diaphanosoma spp., and rotifers in the hypolimnion. When both clearance rates and population densities of M. relicta, L. macrurus, and S. calanoides are taken into account, the total predatory impact of M. relicta is much larger than that of the two relict copepods. Based on a theoretical comparison of measured clearance rates by predators with estimated rates of prey recruitment, we conclude that differences in species composition and abundance between relict and nonrelict lakes described in a previous survey are due principally to predation by M. relicta.

In situ CH4 oxidation inhibition and 13CH4 labeling reveal methane oxidation and emission patterns in a subarctic heath ecosystem

2018 ◽  
Vol 138 (2) ◽  
pp. 197-213 ◽  
Author(s):  
Emily Pickering Pedersen ◽  
Anders Michelsen ◽  
Bo Elberling
Keyword(s):  
Methane Oxidation ◽  
Ch4 Oxidation

Isoform-specific expression and function of neuregulin

Development ◽  
1997 ◽  
Vol 124 (18) ◽  
pp. 3575-3586 ◽  
Author(s):  
D. Meyer ◽  
T. Yamaai ◽  
A. Garratt ◽  
E. Riethmacher-Sonnenberg ◽  
D. Kane ◽  
...  
Keyword(s):  
Biological Effects ◽  
Type I ◽  
Mouse Development ◽  
Specific Expression ◽  
Independent Functions ◽  
Cell Growth And Differentiation ◽  
Cranial Ganglia ◽  
And Function

Neuregulin (also known as NDF, heregulin, ARIA, GGF or SMDF), induces cell growth and differentiation. Biological effects of neuregulin are mediated by members of the erbB family of tyrosine kinase receptors. Three major neuregulin isoforms are produced from the gene, which differ substantially in sequence and in overall structure. Here we use in situ hybridization with isoform-specific probes to illustrate the spatially distinct patterns of expression of the isoforms during mouse development. Ablation of the neuregulin gene in the mouse has demonstrated multiple and independent functions of this factor in development of both the nervous system and the heart. We show here that targeted mutations that affect different isoforms result in distinct phenotypes, demonstrating that isoforms can take over specific functions in vivo. Type I neuregulin is required for generation of neural crest-derived neurons in cranial ganglia and for trabeculation of the heart ventricle, whereas type III neuregulin plays an important role in the early development of Schwann cells. The complexity of neuregulin functions in development is therefore due to independent roles played by distinct isoforms.

Additional carbon stabilization in temperate subsoils impeded by biogeochemical and hydraulic constraints

2021 ◽  
Author(s):  
Georg Guggenberger ◽  
Patrick Liebmann ◽  
Robert Mikutta ◽  
Karsten Kalbitz ◽  
Patrick Wordell-Dietrich ◽  
...  
Keyword(s):  
Management Options ◽  
Microbial Decomposition ◽  
Organic C ◽  
Frequent Exchange ◽  
Labelling Experiment ◽  
Buried Soil ◽  
Fresh Litter ◽  
Global Carbon ◽  
Microbial Mineralization

<p>Formation of mineral-associated organic matter (MAOM) is a decisive process in the stabilization of OM against rapid microbial decomposition and thus in the soils’ role as global carbon (C) sink. Sorption experiments of dissolved OM (DOM) repeatedly showed that particularly mineral subsoils have a large sorption capacity to retain more C. However, there is also an increasing body of literature, revealing an increasing output of dissolved organic C (DOC) from soils. Here, we investigated into this paradox in forest soil under beech by a combination of a field labelling experiment with <sup>13</sup>C-enriched litter with a unique DO<sup>13</sup>C and <sup>13</sup>CO<sub>2</sub> monitoring, an in-situ C exchange experiment with <sup>13</sup>C-coated minerals, and batch sorption experiments.</p><p>Within two years of <sup>13</sup>C monitoring, only 0.5% of litter-derived DO<sup>13</sup>C entered the subsoil, where it was only short-term stabilized by formation of MAOM but prone to fast microbial mineralization. The <sup>13</sup>C monitoring, sorption/desorption experiments in the laboratory, and also the in-situ C exchange on buried soil minerals revealed that there is a frequent exchange of DOM with native OM and a preferential desorption of recently retained OM. Hence, there appeared to be a steady-state equilibrium between C input and output, facilitated by exchange and microbial mineralization of an adopted microbial community. The remobilized OM was also richer in less sorptive carbohydrates. Along with transport of most of DOM along preferential paths, this further increased the discrepancy between laboratory-measured sorption capacities of subsoil and the actual C loading of minerals. Finally, the <sup>13</sup>C labeling experiments revealed that input of fresh litter-derived OM into subsoil may even mobilize old-soil derived OM. Hence, in the field different biogeochemical constraints are acting that prevent that the laboratory-based C sink can be reached in the field.  We conclude, that forest subsoils can hardly be considered as additional C sink, even at management options that increase DOC input to subsoil.</p>

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