scholarly journals Transcriptome-Derived Amplicon Sequencing Markers Elucidate the U.S. Podosphaera macularis Population Structure Across Feral and Commercial Plantings of Humulus lupulus

2020 ◽  
pp. PHYTO-07-20-029
Author(s):  
William A. Weldon ◽  
Brian J. Knaus ◽  
Niklaus J. Grünwald ◽  
Joshua S. Havill ◽  
Mary H. Block ◽  
...  
Keyword(s):  
United States ◽  
Pacific Northwest ◽  
Mating Type ◽  
High Throughput ◽  
Plant Pathogens ◽  
Amplicon Sequencing ◽  
The United States ◽  
Humulus Lupulus ◽  
Geographical Regions ◽  
Podosphaera Macularis

Obligately biotrophic plant pathogens pose challenges in population genetic studies due to their genomic complexities and elaborate culturing requirements with limited biomass. Hop powdery mildew (Podosphaera macularis) is an obligately biotrophic ascomycete that threatens sustainable hop production. P. macularis populations of the Pacific Northwest (PNW) United States differ from those of the Midwest and Northeastern United States, lacking one of two mating types needed for sexual recombination and harboring two strains that are differentially aggressive on the cultivar Cascade and able to overcome the Humulus lupulus R-gene R6 (V6), respectively. To develop a high-throughput marker platform for tracking the flow of genotypes across the United States and internationally, we used an existing transcriptome of diverse P. macularis isolates to design a multiplex of 54 amplicon sequencing markers, validated across a panel of 391 U.S. samples and 123 international samples. The results suggest that P. macularis from U.S. commercial hop yards form one population closely related to P. macularis of the United Kingdom, while P. macularis from U.S. feral hop locations grouped with P. macularis of Eastern Europe. Included in this multiplex was a marker that successfully tracked V6-virulence in 65 of 66 samples with a confirmed V6-phenotype. A new qPCR assay for high-throughput genotyping of P. macularis mating type generated the highest resolution distribution map of P. macularis mating type to date. Together, these genotyping strategies enable the high-throughput and inexpensive tracking of pathogen spread among geographical regions from single-colony samples and provide a roadmap to develop markers for other obligate biotrophs.

scholarly journals Distribution and Characterization of Podosphaera macularis Virulent on Hop Cultivars Possessing R6-Based Resistance to Powdery Mildew

Plant Disease ◽  
2016 ◽  
Vol 100 (6) ◽  
pp. 1212-1221 ◽  
Author(s):  
Sierra N. Wolfenbarger ◽  
Stephen T. Massie ◽  
Cynthia Ocamb ◽  
Emily B. Eck ◽  
Gary G. Grove ◽  
...  
Keyword(s):  
United States ◽  
Powdery Mildew ◽  
Mating Type ◽  
Resistance Genes ◽  
Severe Disease ◽  
The United States ◽  
Fitness Cost ◽  
Eastern United States ◽  
Host Genotype ◽  
Podosphaera Macularis

Host resistance, both quantitative and qualitative, is the preferred long-term approach for disease management in many pathosystems, including powdery mildew of hop (Podosphaera macularis). In 2012, an epidemic of powdery mildew occurred in Washington and Idaho on previously resistant cultivars whose resistance was putatively based on the gene designated R6. In 2013, isolates capable of causing severe disease on cultivars with R6-based resistance were confirmed in Oregon and became widespread during 2014. Surveys of commercial hop yards during 2012 to 2014 documented that powdery mildew is now widespread on cultivars possessing R6 resistance in Washington and Oregon, and the incidence of disease is progressively increasing. Pathogenic fitness, race, and mating type of R6-virulent isolates were compared with isolates of P. macularis lacking R6 virulence. All isolates were positive for the mating type idiomorph MAT1-1 and were able to overcome resistance genes Rb, R3, and R5 but not R1 or R2. In addition, R6-virulent isolates were shown to infect differential cultivars reported to possess the R6 gene and also the R4 gene, although R4 has not yet been broadly deployed in the United States. R6-virulent isolates were not detected from the eastern United States during 2012 to 2015. In growth chamber studies, R6-virulent isolates of P. macularis had a significantly longer latent period and produced fewer lesions on plants with R6 as compared with plants lacking R6, indicating a fitness cost to the fungus. R6-virulent isolates also produced fewer conidia when compared with isolates lacking R6 virulence, independent of whether the isolates were grown on a plant with or without R6. Thus, it is possible that the fitness cost of R6 virulence occurs regardless of host genotype. In field studies, powdery mildew was suppressed by at least 50% on plants possessing R6 as compared with those without R6 when coinoculated with R6-virulent and avirulent isolates. R6 virulence in P. macularis appears to be race specific and, at this time, imposes a measurable fitness penalty on the fungus. Resistance genes R1 and R2 appear to remain effective against R6-virulent isolates of P. macularis in the U.S. Pacific Northwest.

scholarly journals Growth, Strobile Yield, and Quality of Four Humulus lupulus Varieties Cultivated in a Protected Open-sided Greenhouse Structure

HortScience ◽  
2016 ◽  
Vol 51 (7) ◽  
pp. 838-842 ◽  
Author(s):  
Brian J. Pearson ◽  
Richard M. Smith ◽  
Jianjun Chen
Keyword(s):  
United States ◽  
Pacific Northwest ◽  
Southeastern United States ◽  
Dry Weight ◽  
The United States ◽  
Humulus Lupulus ◽  
Yield And Quality ◽  
Production Areas ◽  
Resinous Compound

Hops (Humulus lupulus) is a perennial, herbaceous crop cultivated for its strobiles, or cones, which contain a resinous compound used for flavoring and aroma in food, tea, and beer. The United States is the second largest global producer of hops with greater than 15,000 ha in production. Increased demand for hop products has recently resulted in production of hops in nontraditional production areas (non-Pacific northwest U.S. region). To examine cultivation potential of hops within the southeastern United States, 60 hop rhizomes consisting of four varieties were transplanted into native, deep sand soil (Candler and Tavares-Millhopper soil series) within a protected, open-sided greenhouse and evaluated for growth, strobile yield, and brewing values for a period of 2 years. Plant bine length was recorded weekly for 20 weeks throughout year 1 with mean bine lengths of 609, 498, 229, and 221 cm at harvest for ‘Chinook’, ‘Columbus’, ‘Amalia’ and ‘Neo1’, respectively. Mean harvested strobile dry weight recorded for year 1 was 21.2, 17.9, 9.0, and 8.2 g/plant for ‘Columbus’, ‘Chinook’, ‘Neo1’ and ‘Amalia’, respectively. With the exception of ‘Neo1’, mean strobile mass was lower for all cultivars during year 2 with 16.6, 10.3, 25.8, and 2.6 g/plant for ‘Columbus’, ‘Chinook’, ‘Neo1’ and ‘Amalia’, respectively. Alpha acid concentrations by percentage strobile mass for year 1 were 6.8%, 9.7%, 3.8%, and 4.3% for ‘Columbus’, ‘Chinook’, ‘Amalia’, and ‘Neo1’, respectively. Alpha acids varied year 2 with concentrations of 4.8%, 10.4%, and 5.6% for ‘Columbus’, ‘Chinook’, and ‘Neo1’, respectively. Findings support viability of hop production in the southeastern United States and establish the benchmark for future varietal trialing investigations.

scholarly journals Four New Host and Three New State Records of Dothistroma Needle Blight Caused by Dothistroma pini in the United States

Plant Disease ◽  
2014 ◽  
Vol 98 (10) ◽  
pp. 1443-1443 ◽  
Author(s):  
I. Barnes ◽  
J. A. Walla ◽  
A. Bergdahl ◽  
M. J. Wingfield
Keyword(s):  
United States ◽  
Pacific Northwest ◽  
Mating Type ◽  
Dna Sequences ◽  
Pinus Nigra ◽  
The United States ◽  
New Host ◽  
Dothistroma Needle Blight ◽  
Dothistroma Pini ◽  
Needle Blight

During 2010 and 2011, Dothistroma needle blight (DNB), also known as red band needle blight, was observed for the first time in Cass and Pembina counties in North Dakota (ND). In Pembina Co., DNB was observed in two sites in the Jay V. Wessels Wildlife Management Area (JWWMA). In September 2009, yellow spots on green needles were observed on some trees along the western edge of one planting. By June 2010, DNB was found on third- and fourth-year needles in both JWWMA plantings. Symptoms had developed into dark brown bands or spots on necrotic needles that contained erumpent black acervuli. In June 2011, similar DNB symptoms were observed on Pinus nigra, P. flexilis, P. ponderosa, P. cembra, and P. albicaulis in the Dale E. Herman Research Arboretum, Cass Co., ND. DNB was collected in July 2011 in Brookings Co., South Dakota (SD), from a seed source provenance planting of P. ponderosa. To identify the species causing the infections, symptomatic needles were collected in 2010 from both sites in JWWMA and then again from all four locations in 2011 on all pine species infected. Needles of P. nigra from a private residence near Fairland in Shelby County, Indiana (IN), were also included in the sample set. The rDNA-ITS was PCR-amplified either directly from conidia obtained from acervuli on the needles or from cultures obtained from isolations. Amplicons were sequenced and a BLAST search was performed in GenBank. The sequences of samples obtained from P. nigra, P. flexilis, P. cembra, and P. albicaulis in ND, P. ponderosa in SD, and P. nigra from IN showed 100% sequence homology with Dothistroma pini (Accession No. AY808302). These isolates were identical to all previously assayed isolates of D. pini from Nebraska, Minnesota, and Michigan in the United States. The P. ponderosa isolates from all three sites in ND differed from the other isolates and contained a 1-bp point mutation from a C to a T at site 72 (sequence deposited in GenBank, accession KJ933441). Mating type was determined using species-specific mating type primers for D. pini (3). All 26 samples from ND and SD were of the MAT-1 idiomorph, while the sample from IN contained the MAT-2 idiomorph. All cultures are maintained at FABI, University of Pretoria, South Africa. The two species that cause DNB, D. septosporum (G. Dorog.) M. Morelet and D. pini Hulbary, are morphologically indistinguishable and molecular characterization remains essential for correct species identification (1). Host and geographical distribution range determinations of Dothistroma spp. made without molecular methods are not valid. To date, species confirmed using DNA sequences in the United States include D. septosporum in the Pacific Northwest states of Oregon and Idaho on P. ponderosa, in Montana on P. contorta v. latifolia, and D. pini in the North Central states of Nebraska, Minnesota, and Michigan on P. nigra (1). This study documents the presence of D. pini in three additional states, including a first report of DNB in ND and SD. It also includes new records of D. pini infecting P. flexilis, P. cembra, P. albicaulis, and P. ponderosa. Results of this study have expanded the documented host range of D. pini in the United States from one (P. nigra) to five species. Globally, D. pini is now known to infect a total of 10 pine hosts (2,4,5). References: (1) I. Barnes et al. Stud. Mycol. 50:551, 2004. (2) I. Barnes et al. For. Pathol. 41:361, 2011. (3) M. Groenewald et al. Phytopathology 97:825, 2007. (4) D. Piou et al. Plant Dis. 98:841, 2014. (5) B. Piskur et al. For. Pathol. 43:518, 2013.

scholarly journals Prevalence of single and coinfections of human pathogens in Ixodes ticks from five geographical regions in the United States, 2013–2019

2021 ◽  
Vol 12 (2) ◽  
pp. 101637
Author(s):  
Aine Lehane ◽  
Sarah E. Maes ◽  
Christine B. Graham ◽  
Emma Jones ◽  
Mark Delorey ◽  
...  
Keyword(s):  
United States ◽  
The United States ◽  
Human Pathogens ◽  
Geographical Regions ◽  
Ixodes Ticks

scholarly journals Assessing the Phytosanitary Risk Posed by an Intraspecific Invasion of Cryphonectria parasitica in Europe

2019 ◽  
Vol 109 (12) ◽  
pp. 2055-2063 ◽  
Author(s):  
Francesca Dennert ◽  
Joana Beatrice Meyer ◽  
Daniel Rigling ◽  
Simone Prospero
Keyword(s):  
United States ◽  
South Korea ◽  
Plant Pathogens ◽  
Castanea Sativa ◽  
The United States ◽  
Cryphonectria Parasitica ◽  
Seedling Mortality ◽  
New Host ◽  
Phytosanitary Measures

Intraspecific cryptic invasions may occur when new strains of an invasive species are introduced into an area where this species had already been introduced previously. In plant pathogens, such invasions are not well studied, even if, potentially, they can have severe consequences. Here, we investigated the effects of a potential intraspecific invasion in Europe of Cryphonectria parasitica, the causal agent of chestnut blight. Specifically, we tested the hypotheses that (i) non-European strains are more virulent on Castanea sativa than those already present in Europe because they have never encountered this new host, and (ii) the variation in virulence among strains is higher within native than within introduced populations. In a greenhouse, 2-year-old C. sativa seedlings were inoculated with Cryphonectria parasitica strains from South Korea, the United States, and Switzerland, and lesion development and seedling mortality were recorded weekly. Additionally, growth and sporulation of the strains were measured in vitro on agar medium at 15 and 24°C. Although lesion growth was similar for all strains, seedlings inoculated with strains from South Korea and Switzerland died faster than seedlings inoculated with strains from the United States. Moreover, in vitro strains from South Korea grew faster and produced more spores at both temperatures than the strains from the other two countries. In conclusion, our results did not support the two hypotheses. All strains, regardless of their origin, were found to be highly virulent on the inoculated chestnut seedlings. Nevertheless, current phytosanitary measures to avoid the introduction of new genotypes of C. parasitica into Europe should be further implemented.

scholarly journals First record of Euxestonotus error (Hymenoptera: Platygastridae) in the Pacific Northwest, United States of America

2016 ◽  
Vol 148 (5) ◽  
pp. 616-618 ◽  
Author(s):  
E.R. Echegaray ◽  
R.N. Stougaard ◽  
B. Bohannon
Keyword(s):  
United States ◽  
New York ◽  
Pacific Northwest ◽  
United States Of America ◽  
First Record ◽  
The United States ◽  
Sitodiplosis Mosellana ◽  
Wheat Midge ◽  
The Pacific ◽  
Northwestern Montana

AbstractEuxestonotus error (Fitch) (Hymenoptera: Platygastridae) is considered part of the natural enemy complex of the wheat midge Sitodiplosis mosellana (Géhin) (Diptera: Cecidomyiidae). Although previously reported in the United States of America, there is no record for this species outside the state of New York since 1865. A survey conducted in the summer of 2015 revealed that E. error is present in northwestern Montana and is likely playing a role in the suppression of wheat midge populations.

Paleogeographic evolution of the United States Pacific Northwest during Paleogene time

1987 ◽  
Vol 24 (8) ◽  
pp. 1652-1667 ◽  
Author(s):  
Paul L. Heller ◽  
Rowland W. Tabor ◽  
Christopher A. Suczek
Keyword(s):  
United States ◽  
Pacific Northwest ◽  
Middle Eocene ◽  
The United States ◽  
Oceanic Islands ◽  
Local Source ◽  
Second Phase ◽  
Early Oligocene ◽  
Basin Development ◽  
Major Transition

Paleogeographic reconstructions for Oregon and Washington during Paleogene time illustrate a major transition from a dominantly compressional (prior to middle Eocene time) to an extensional tectonic regime. This transition resulted in the development of three phases of Paleogene basin evolution in the United States Pacific Northwest. During the initial phase, basins formed along the continental margin during collision of oceanic islands. Sediments in these basins were derived from nearby orogenic highlands. The second phase of basin development began in middle Eocene time and consisted of rapid subsidence of individual basins that formed within a broad forearc region. Nonmarine basins that formed during this phase were caused by extension possibly associated with transcurrent faulting. Rapid sedimentation in both marine and nonmarine basins during this time consisted dominantly of sandstone derived from Cretaceous plutonic sources far to the east. The final stage of basin development was the modification of previous basin configurations by the growth of the Cascade volcanic arc, which was initiated in early Oligocene time. The rising Cascade Range diverted streams carrying eastern-derived material, thereby reducing overall sedimentation rates in the coastal basins and providing a local source of volcanic detritus.

A review of the biology and ecology of Florida beggarweed (Desmodium tortuosum)

Weed Science ◽  
2004 ◽  
Vol 52 (2) ◽  
pp. 185-200 ◽  
Author(s):  
Theodore M. Webster ◽  
John Cardina
Keyword(s):  
United States ◽  
Plant Pathogens ◽  
Cultural Practices ◽  
The United States ◽  
Western Hemisphere ◽  
Southern United States ◽  
Southeast United States ◽  
Forage Crop ◽  
Disturbed Areas ◽  
The World

Florida beggarweed is native to the Western Hemisphere but is naturalized around the world. During the last century, the mechanization of agriculture has transitioned Florida beggarweed from an important forage component to a weed of significance in the coastal plain of the southeast United States. This herbaceous annual is naturalized and found in fields and disturbed areas throughout the southern United States. The characteristics that made Florida beggarweed a good forage crop also make it a formidable weed. This review describes the importance of Florida beggarweed as a weed in the southern United States and the taxonomy of this species and details the distribution throughout the world and within the United States. The ecology of Florida beggarweed and its interactions with crop plants, insects, nematodes, and plant pathogens also are summarized. Finally, management of Florida beggarweed in agricultural systems using cultural practices and herbicides is reviewed.

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