scholarly journals Communities that thrive in extreme conditions captured from a freshwater lake

2016 ◽  
Vol 12 (9) ◽  
pp. 20160562 ◽  
Author(s):  
Etienne Low-Décarie ◽  
Gregor F. Fussmann ◽  
Alex J. Dumbrell ◽  
Graham Bell

Organisms that can grow in extreme conditions would be expected to be confined to extreme environments. However, we were able to capture highly productive communities of algae and bacteria capable of growing in acidic (pH 2), basic (pH 12) and saline (40 ppt) conditions from an ordinary freshwater lake. Microbial communities may thus include taxa that are highly productive in conditions that are far outside the range of conditions experienced in their host ecosystem. The organisms we captured were not obligate extremophiles, but were capable of growing in both extreme and benign conditions. The ability to grow in extreme conditions may thus be a common functional attribute in microbial communities.

2020 ◽  
Vol 8 (6) ◽  
pp. 906 ◽  
Author(s):  
Francisco L. Massello ◽  
Chia Sing Chan ◽  
Kok-Gan Chan ◽  
Kian Mau Goh ◽  
Edgardo Donati ◽  
...  

The study of microbial communities from extreme environments is a fascinating topic. With every study, biologists and ecologists reveal interesting facts and questions that dispel the old belief that these are inhospitable environments. In this work, we assess the microbial diversity of three hot springs from Neuquén, Argentina, using high-throughput amplicon sequencing. We predicted a distinct metabolic profile in the acidic and the circumneutral samples, with the first ones being dominated by chemolithotrophs and the second ones by chemoheterotrophs. Then, we collected data of the microbial communities of hot springs around the world in an effort to comprehend the roles of pH and temperature as shaping factors. Interestingly, there was a covariation between both parameters and the phylogenetic distance between communities; however, neither of them could explain much of the microbial profile in an ordination model. Moreover, there was no correlation between alpha diversity and these parameters. Therefore, the microbial communities’ profile seemed to have complex shaping factors beyond pH and temperature. Lastly, we looked for taxa associated with different environmental conditions. Several such taxa were found. For example, Hydrogenobaculum was frequently present in acidic springs, as was the Sulfolobaceae family; on the other hand, Candidatus Hydrothermae phylum was strongly associated with circumneutral conditions. Interestingly, some singularities related to sites featuring certain taxa were also observed.


Diversity ◽  
2019 ◽  
Vol 11 (10) ◽  
pp. 201 ◽  
Author(s):  
Carlos Rochera ◽  
Antonio Camacho

Here we present a comprehensive review of the diversity revealed by research in limnology and microbial ecology conducted in Byers Peninsula (Livingston Island, South Shetland Islands, Antarctica) during the last two decades. The site constitutes one of the largest ice-free areas within the Antarctic Peninsula region. Since it has a high level of environmental protection, it is less human-impacted compared to other sites within the South Shetland archipelago. The main investigations in Byers Peninsula focused on the physical and chemical limnology of the lakes, ponds, rivers, and wetlands, as well as on the structure of their planktonic and benthic microbial communities, and on the functional ecology of the microbial food webs. Lakes and ponds in Byers range along a productivity gradient that extends from the less productive lakes located upland to the eutrophic coastal lakes. Their planktonic assemblages include viruses, bacteria, a metabolically diverse community of protists (i.e., autotrophs, heterotrophs, and mixotrophs), and a few metazooplankton species. Most of the studies conducted in the site demonstrate the strong influence of the physical environment (i.e., temperature, availability of light, and water) and nutrient availability in structuring these microbial communities. However, top-down biotic processes may occur in summer, when predation by zooplankton can exert a strong influence on the abundance of protists, including flagellates and ciliated protozoa. As a consequence, bacterioplankton could be partly released from the grazing pressure exerted by these protists, and proliferates fueled by external nutrient subsidies from the lake’s catchment. As summer temperatures in this region are slightly above the melting point of water, biotic processes, such as those related to the productivity of lakes during ice-free periods, could become even more relevant as warming induced by climate change progresses. The limnological research carried out at the site proves that Byers Peninsula deserves special attention in the framework of the research in extreme environments. Together with nearby sites, such as Signy Island, Byers Peninsula comprises a featuring element of the Maritime Antarctic region that represents a benchmark area relative to the global distribution and diversity of aquatic microorganisms.


Biology ◽  
2021 ◽  
Vol 10 (9) ◽  
pp. 924
Author(s):  
Aleksei S. Rozanov ◽  
Anton V. Korzhuk ◽  
Sergei V. Shekhovtsov ◽  
Gennady V. Vasiliev ◽  
Sergei E. Peltek

The Kuril Archipelago is a part of the Circum-Pacific Belt (Ring of Fire). These islands have numerous thermal springs. There are very few studies on these microbial communities, and none of them have been conducted by modern molecular biological methods. Here we performed the first metagenomic study on two thermophilic microbial communities of Kunashir Island. Faust Lake is hot (48 °C) and highly acidic (pH 2.0). We constructed 28 metagenome-assembled genomes as well as 17 16S ribosomal RNA sequences. We found that bottom sediments of Faust Lake are dominated by a single species of red algae belonging to the Cyanidiaceae family. Archaeans in Faust Lake are more diverse than bacteria but less abundant. The Tretyakovsky Thermal Spring is also hot (52 °C) but only weakly acidic (pH 6.0). It has much higher microbial diversity (233 metagenome-assembled genomes; 93 16S ribosomal RNAs) and is dominated by bacteria, with only several archaeans and one fungus. Despite their geographic proximity, these two thermal springs were found to not share any species. A comparison of these two lakes with other thermal springs of the Circum-Pacific Belt revealed that only a few members of the communities are shared among different locations.


PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2376 ◽  
Author(s):  
Amy M. Savage ◽  
Justin Hills ◽  
Katherine Driscoll ◽  
Daniel J. Fergus ◽  
Amy M. Grunden ◽  
...  

High-throughput sequencing techniques have opened up the world of microbial diversity to scientists, and a flurry of studies in the most remote and extreme habitats on earth have begun to elucidate the key roles of microbes in ecosystems with extreme conditions. These same environmental extremes can also be found closer to humans, even in our homes. Here, we used high-throughput sequencing techniques to assess bacterial and archaeal diversity in the extreme environments inside human homes (e.g., dishwashers, hot water heaters, washing machine bleach reservoirs, etc.). We focused on habitats in the home with extreme temperature, pH, and chemical environmental conditions. We found a lower diversity of microbes in these extreme home environments compared to less extreme habitats in the home. However, we were nonetheless able to detect sequences from a relatively diverse array of bacteria and archaea. Habitats with extreme temperatures alone appeared to be able to support a greater diversity of microbes than habitats with extreme pH or extreme chemical environments alone. Microbial diversity was lowest when habitats had both extreme temperature and one of these other extremes. In habitats with both extreme temperatures and extreme pH, taxa with known associations with extreme conditions dominated. Our findings highlight the importance of examining interactive effects of multiple environmental extremes on microbial communities. Inasmuch as taxa from extreme environments can be both beneficial and harmful to humans, our findings also suggest future work to understand both the threats and opportunities posed by the life in these habitats.


2017 ◽  
Vol 39 (6) ◽  
pp. 34-39
Author(s):  
Helen Albert

The ability of some organisms to live in extreme environments has always fascinated us. While more complex species such as mammals can live in very cold or hot surroundings, microorganisms definitely take the crown when it comes to being able to survive the most extreme conditions. These extremophiles are very resilient and can survive conditions that would kill other organisms in seconds. Indeed, some researchers believe that life may have begun with such organisms living deep under the ocean on hydrothermal vents. Helen Albert talks to Professor Rania Siam from The American University in Cairo, Egypt, about her research on microbes living near highly salty underwater ‘brine pools’ in the Red Sea. Helen also discusses the remarkable bacterium Deinococcus radiodurans, which is able to withstand high levels of radiation and desiccation, with Professor Michael Daly from the Uniformed Services University in Bethesda in the USA.


2021 ◽  
Vol 50 (1) ◽  
Author(s):  
Nozomi Ando ◽  
Blanca Barquera ◽  
Douglas H. Bartlett ◽  
Eric Boyd ◽  
Audrey A. Burnim ◽  
...  

Sampling and genomic efforts over the past decade have revealed an enormous quantity and diversity of life in Earth's extreme environments. This new knowledge of life on Earth poses the challenge of understanding its molecular basis in such inhospitable conditions, given that such conditions lead to loss of structural changes and of function in biomolecules from mesophiles. In this review, we discuss the physicochemical properties of extreme environments. We present the state of recent progress in extreme environmental genomics. We then present an overview of our current understanding of the biomolecular adaptation to extreme conditions. As our current and future understanding of biomolecular structure–function relationships in extremophiles requires methodologies adapted to extremes of pressure, temperature, and chemical composition, advances in instrumentation for probing biophysical properties under extreme conditions are presented. Finally, we briefly discuss possible future directions in extreme biophysics. Expected final online publication date for the Annual Review of Biophysics, Volume 50 is May 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


2015 ◽  
Vol 10 (6) ◽  
pp. 1337-1351 ◽  
Author(s):  
Jason Nicholas Woodhouse ◽  
Andrew Stephen Kinsela ◽  
Richard Nicholas Collins ◽  
Lee Chester Bowling ◽  
Gordon L Honeyman ◽  
...  

1999 ◽  
Vol 354 (1392) ◽  
pp. 1923-1939 ◽  
Author(s):  
Kenneth H. Nealson ◽  
Pamela G. Conrad

Molecular methods of taxonomy and phylogeny have changed the way in which life on earth is viewed; they have allowed us to transition from a eukaryote–centric (five–kingdoms) view of the planet to one that is peculiarly prokarote–centric, containing three kingdoms, two of which are prokaryotic unicells. These prokaryotes are distinguished from their eukaryotic counterparts by their toughness, tenacity and metabolic diversity. Realization of these features has, in many ways, changed the way we feel about life on earth, about the nature of life past and about the possibility of finding life elsewhere. In essence, the limits of life on this planet have expanded to such a degree that our thoughts of both past and future life have been altered. The abilities of prokaryotes to withstand many extreme conditions has led to the term extremophiles, used to describe the organisms that thrive under conditions thought just a few years ago, to be inconsistent with life. Perhaps the most extensive adaptation to extreme conditions, however, is represented by the ability of many bacteria to survive nutrient conditions not compatible with eukaryotic life. Prokaryotes have evolved to use nearly every redox couple that is in abundance on earth, filling the metabolic niches left behind by the oxygen–using, carbon–eating eukaryotes. This metabolic plasticity leads to a common feature in physically stratified environments of layered microbial communities, chemical indicators of the metabolic diversity of the prokaryotes. Such ‘metabolic extremophily’ forms a backdrop by which we can view the energy flow of life on this planet, think about what the evolutionary past of the planet might have been, and plan ways to look for life elsewhere, using the knowledge of energy flow on earth.


Minerals ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 1324
Author(s):  
Shamik Dasgupta ◽  
Xiaotong Peng ◽  
Kaiwen Ta

The discovery of deep-sea hydrothermal vents in the late 1970s widened the limits of life and habitability. The mixing of oxidizing seawater and reduction of hydrothermal fluids create a chemical disequilibrium that is exploited by chemosynthetic bacteria and archaea to harness energy by converting inorganic carbon into organic biomass. Due to the rich variety of chemical sources and steep physico-chemical gradients, a large array of microorganisms thrive in these extreme environments, which includes but are not restricted to chemolithoautotrophs, heterotrophs, and mixotrophs. Past research has revealed the underlying relationship of these microbial communities with the subsurface geology and hydrothermal geochemistry. Endolithic microbial communities at the ocean floor catalyze a number of redox reactions through various metabolic activities. Hydrothermal chimneys harbor Fe-reducers, sulfur-reducers, sulfide and H2-oxidizers, methanogens, and heterotrophs that continuously interact with the basaltic, carbonate, or ultramafic basement rocks for energy-yielding reactions. Here, we briefly review the global deep-sea hydrothermal systems, microbial diversity, and microbe–mineral interactions therein to obtain in-depth knowledge of the biogeochemistry in such a unique and geologically critical subseafloor environment.


2021 ◽  
Author(s):  
Purificacion Lopez-Garcia ◽  
Guillaume Reboul ◽  
Gwendoline David ◽  
Ludwig Jardillier ◽  
Nataliia Annenkova ◽  
...  

<p>Understanding how abiotic and biotic factors influence microbial community assembly and function is crucial to understand ecological processes and predict how communities will respond to environmental change. Lake Baikal (Russian Federation) is the oldest, deepest and most voluminous freshwater lake on Earth, resembling in several respects sea environments. It thus offers a unique opportunity to test the effect of horizontal versus vertical gradients in community structure. Since climate change is rapidly affecting Siberia and Lake Baikal, this information can be useful both, as a reference for future monitoring of the lake and to help predictions about how local communities change as a function of environmental parameters. In order to address these questions, in 2017, we carried out a comprehensive sampling of Lake Baikal water columns and sediments along a North–South latitudinal gradient (ca. 600 km) across the three major basins of the lake, from coastal to pelagic areas and from surface to the deepest zones (0.5 to 1450 m deep). We then applied metabarcoding approaches based on 16S and 18S rRNA gene amplicon sequencing to characterize the composition of microbial communities, in particular, both prokaryotes and eukaryotes in sediments and microbial eukaryotes (0.2-30 µm cell size) in plankton (65 samples from 17 water columns). As expected, depth had a strong significant effect on protist community stratification in the water column. The effect of the latitudinal gradient was marginal and no significant difference was observed between coastal and surface open water communities. Co-occurrence network analyses showed that epipelagic protist communities were significantly more interconnected than in the dark water column. Surprisingly, Baikal benthic communities (13 sites) displayed remarkable stability across sites and seemed not determined by depth or latitude. Comparative analyses with other freshwater, brackish and marine sediments confirmed the distinctness of Baikal benthic communities, which show some similarity to marine and hydrothermally-influenced systems likely owing to its high oligotrophy, depth and fault-associated seepage. Metagenomic analyses of sediment samples show a wide metabolic potential of Baikal benthos and highlight the relative importance ammonia-oxidizing archaea in upper sediment layers.</p>


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