scholarly journals A mobile sex-determining region, male-specific haplotypes, and rearing environment influence age at maturity in Chinook salmon

2020 ◽  
Author(s):  
Garrett J McKinney ◽  
Krista M Nichols ◽  
Michael J Ford
Keyword(s):  
Chinook Salmon ◽  
Genetic Architecture ◽  
Chromosomal Location ◽  
Pacific Salmon ◽  
Rad Sequencing ◽  
Sex Linkage ◽  
Age At Maturity ◽  
Sequencing Data ◽  
Sexually Antagonistic Selection ◽  
Male Specific

AbstractVariation in age at maturity is an important contributor to life history and demographic variation within and among species. The optimal age at maturity can vary by sex, and the ability of each sex to evolve towards its fitness optimum depends on the genetic architecture of maturation. Using GWAS of RAD sequencing data, we show that age at maturity in Chinook salmon exhibits sex-specific genetic architecture, with age at maturity in males governed by large (up to 20Mb) male-specific haplotypes. These regions showed no such effect in females. We also provide evidence for translocation of the sex-determining gene between two different chromosomes. This has important implications for sexually antagonistic selection, particularly that sex-linkage of adaptive genes may differ within and among populations based on chromosomal location of the sex-determining gene. Our findings will facilitate research into the genetic causes of shifting demography in Chinook salmon as well as a better understanding of sex-determination in this species and Pacific salmon in general.

scholarly journals The pink salmon genome: uncovering the genomic consequences of a strict two-year life-cycle

2021 ◽  
Author(s):  
Kris A. Christensen ◽  
Eric B. Rondeau ◽  
Dionne Sakhrani ◽  
Carlo A. Biagi ◽  
Hollie Johnson ◽  
...  
Keyword(s):  
Pacific Salmon ◽  
Pink Salmon ◽  
Chromosomal Polymorphism ◽  
Oncorhynchus Gorbuscha ◽  
Sequencing Data ◽  
Isolated Populations ◽  
Temporal Isolation ◽  
History Of ◽  
Genome Assemblies ◽  
Salmon Fishery

Pink salmon (Oncorhynchus gorbuscha) adults are the smallest of the five Pacific salmon native to the western Pacific Ocean. Pink salmon are also the most abundant of these species and account for a large proportion of the commercial value of the salmon fishery worldwide. A strict two-year life-history of most pink salmon generates temporally isolated populations that spawn either in even-years or odd-years. To uncover the influence of this genetic isolation, reference genome assemblies were generated for each year-class and whole genome re-sequencing data was collected from salmon of both year-classes. The salmon were sampled from six Canadian rivers and one Japanese river. At multiple centromeres we identified peaks of Fst between year-classes that were millions of base-pairs long. The largest Fst peak was also associated with a million base-pair chromosomal polymorphism found in the odd-year genome near a centromere. These Fst peaks may be the result of centromere drive or a combination of reduced recombination and genetic drift, and they could influence speciation. Other regions of the genome influenced by odd-year and even-year temporal isolation and tentatively under selection were mostly associated with genes related to immune function, organ development/maintenance, and behaviour.

scholarly journals Matrilineal inheritance of a key mediator of prenatal maternal effects

2016 ◽  
Vol 283 (1838) ◽  
pp. 20161676 ◽  
Author(s):  
Barbara Tschirren ◽  
Ann-Kathrin Ziegler ◽  
Joel L. Pick ◽  
Monika Okuliarová ◽  
Michal Zeman ◽  
...  
Keyword(s):  
Maternal Effects ◽  
Prenatal Development ◽  
Experimental Manipulation ◽  
Sex Linkage ◽  
Maternal Line ◽  
Sexually Antagonistic Selection ◽  
Paternal Grandmother ◽  
Female Specific ◽  
Yolk Testosterone ◽  
Matrilineal Inheritance

Sex-linkage is predicted to evolve in response to sex-specific or sexually antagonistic selection. In line with this prediction, most sex-linked genes are associated with reproduction in the respective sex. In addition to traits directly involved in fertility and fecundity, mediators of maternal effects may be predisposed to evolve sex-linkage, because they indirectly affect female fitness through their effect on offspring phenotype. Here, we test for sex-linked inheritance of a key mediator of prenatal maternal effects in oviparous species, the transfer of maternally derived testosterone to the eggs. Consistent with maternal inheritance, we found that in Japanese quail ( Coturnix japonica ) granddaughters resemble their maternal (but not their paternal) grandmother in yolk testosterone deposition. This pattern of resemblance was not due to non-genetic priming effects of testosterone exposure during prenatal development, as an experimental manipulation of yolk testosterone levels did not affect the females' testosterone transfer to their own eggs later in life. Instead, W chromosome and/or mitochondrial variation may underlie the observed matrilineal inheritance pattern. Ultimately, the inheritance of mediators of maternal effects along the maternal line will allow for a fast and direct response to female-specific selection, thereby affecting the dynamics of evolutionary processes mediated by maternal effects.

The Ecology of Juvenile Salmon in the Northeast Pacific Ocean: Regional Comparisons

2007 ◽  
Keyword(s):  
Chinook Salmon ◽  
Sockeye Salmon ◽  
Pacific Salmon ◽  
Gulf Of Alaska ◽  
Juvenile Salmon ◽  
Stomach Fullness ◽  
Feeding Intensity ◽  
Percentage Weight ◽  
Juvenile Pacific Salmon ◽  
Survival Patterns

Abstract.—Upon entering marine waters, juvenile Pacific salmon <em>Oncorhynchus </em>spp. depend on feeding at high and sustained levels to achieve growth necessary for survival. In the last decade, several concurrent studies have been examining the food habits and feeding intensity of juvenile Pacific salmon in the shelf regions from California to the northern Gulf of Alaska. In this paper, we compared results from feeding studies for all five species of juvenile salmon (Chinook salmon <em>O. tshawytscha</em>, coho salmon <em>O. kisutch</em>, chum salmon <em>O. keta, </em>sockeye salmon <em>O. nerka</em>, and pink salmon <em>O. gorbuscha</em>) between 2000 and 2002, years when these regions were sampled extensively. Within these years, we temporally stratified our samples to include early (May–July) and late (August–October) periods of ocean migration. Coho and Chinook salmon diets were most similar due to a high consumption of fish prey, whereas pink, chum, and sockeye salmon diets were more variable with no consistently dominant prey taxa. Salmon diets varied more spatially (by oceanographic and regional factors) than temporally (by season or year) in terms of percentage weight or volume of major prey categories. We also examined regional variations in feeding intensity based on stomach fullness (expressed as percent body weight) and percent of empty or overly full stomachs. Stomach fullness tended to be greater off Alaska than off the west coast of the United States, but the data were highly variable. Results from these comparisons provide a large-scale picture of juvenile salmon feeding in coastal waters throughout much of their range, allowing for comparison with available prey resources, growth, and survival patterns associated with the different regions.

Challenges for Diadromous Fishes in a Dynamic Global Environment

2009 ◽  
Keyword(s):  
Chinook Salmon ◽  
Large Scale ◽  
Coho Salmon ◽  
Pacific Salmon ◽  
Pink Salmon ◽  
Commercial Catch ◽  
Atmospheric Processes ◽  
Energy Transfers ◽  
Salmon Production ◽  
The Impact

<em>Abstract</em>.-Pacific salmon <em>Oncorhynchus </em>spp. catches are at historic high levels. It is significant that one of the world's major fisheries for a group of species that dominates the surface waters of the subarctic Pacific is actually very healthy. Natural trends in climate are now recognized to cause large fluctuations in Pacific salmon production, as shown in historical records of catch and recent changes probably have been affected by greenhouse gas induced climate changes. Pink salmon <em>O. gorbuscha </em>and chum salmon <em>O. keta </em>production and catch has increased in the past 30 years and may continue in a similar trend for for the next few decades. Coho salmon <em>O. kisutch </em>and Chinook salmon <em>O. tshawytscha </em>catches have been declining for several decades, particularly at the southern end of their range, and they may continue to decline. In the 1970s, hatcheries were considered to be a method of adding to the wild production of coho and Chinook salmon because the ocean capacity to produce these species was assumed to be underutilized. Large-scale changes in Pacific salmon abundances are linked to changes in large-scale atmospheric processes. These large-scale atmospheric processes are also linked to planetary energy transfers, and there is a decadal scale pattern to these relationships. Pacific salmon production in general is higher in decades of intense Aleutian lows than in periods of weak Aleutian lows. Key to understanding the impact of climate change on Pacific salmon is understanding how the Aleutian low will change. Chinook and coho salmon are minor species in the total commercial catch, but important socially and economically in North America. A wise use of hatcheries may be needed to maintain abundances of these species in future decades.

Genetic control over survival in Pacific salmon (Oncorhynchus spp.): experimental evidence between and within populations of New Zealand chinook salmon (O. tshawytscha)

2003 ◽  
Vol 60 (1) ◽  
pp. 1-11 ◽  
Author(s):  
Martin J Unwin ◽  
Michael T Kinnison ◽  
Nelson C Boustead ◽  
Thomas P Quinn
Keyword(s):  
New Zealand ◽  
Chinook Salmon ◽  
Pacific Salmon ◽  
Survival Rates ◽  
Genetic Correlations ◽  
Local Conditions ◽  
Family Level ◽  
Sib Families ◽  
Similar Survival ◽  
Two Populations

The ability to survive to adulthood and return to natal sites is a fundamental characteristic of anadromous salmonids, and low survival is likely to have prevented establishment of new populations within and outside their native range. We hypothesised that there is family-level genetic variation in traits contributing to survival and that populations evolve to maximise survival in response to prevailing local conditions. To test these predictions, we compared postrelease survival for chinook salmon families from two populations established in New Zealand in the 1900s. Both populations, Glenariffe Stream and Hakataramea River, had similar survival when released after translocation to a drainage familiar to neither population. However, Glenariffe families had higher survival than Hakataramea families when both populations were released from Glenariffe Stream, indicating a survival advantage for the local fish. In addition, there were significant correlations between survival rates for paternal half-sib families of Glenariffe fish and between survival rates for families released from the two locations. Family-specific survival was positively correlated with weight at release, but there were underlying genetic correlations unexplained by size. Taken together, these results suggest considerable genetic influence over survival and return of salmon and that population-specific adaptation can occur within 30 generations of establishment.

Sexual Dimorphism in the Adipose Fin of Pacific Salmon (Oncorhynchus)

1983 ◽  
Vol 40 (11) ◽  
pp. 2019-2024 ◽  
Author(s):  
Terry D. Beacham ◽  
Clyde B. Murray
Keyword(s):  
Sexual Dimorphism ◽  
Chinook Salmon ◽  
Pacific Salmon ◽  
Pink Salmon ◽  
Relative Size ◽  
Correct Identification ◽  
Actual Amount ◽  
Adipose Fin

Male adipose fins of Oncorhynchus species were 30–50% larger than those of same-sized females, the actual amount depending on the species. Accuracy of classification of the standards ranged from 87% in chinook salmon (O. tshawytscha) to 98% in pink salmon (O. gorbuscha). Testing the method on new samples usually resulted in an accuracy of at least 90% correct identification of sex for any species. Relative size of the adipose fin should allow for easy and accurate external identification of the sexes of silver-bright Oncorhynchus.

Protandry in Pacific salmon

2000 ◽  
Vol 57 (6) ◽  
pp. 1252-1257 ◽  
Author(s):  
Yolanda Morbey
Keyword(s):  
Chinook Salmon ◽  
Sockeye Salmon ◽  
Coho Salmon ◽  
Pacific Salmon ◽  
Pink Salmon ◽  
Statistical Procedure ◽  
Timing Data ◽  
Mating Opportunities ◽  
Gender Specific ◽  
Specific Timing

Protandry, the earlier arrival of males to the spawning grounds than females, has been reported in several studies of Pacific salmon (Oncorhynchus spp.). However, the reasons for protandry in salmon are poorly understood and little is known about how protandry varies among and within populations. In this study, protandry was quantified in a total of 105 years using gender-specific timing data from seven populations (one for pink salmon (O. gorbuscha), three for coho salmon (O. kisutch), two for sockeye salmon (O. nerka), and one for chinook salmon (O. tshawytscha)). Using a novel statistical procedure, protandry was found to be significant in 90% of the years and in all populations. Protandry may be part of the males' strategy to maximize mating opportunities and may facilitate mate choice by females.

Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1

2019 ◽  
Vol 74 (11) ◽  
pp. 3179-3183 ◽  
Author(s):  
Katrine Hartung Hansen ◽  
Minna Rud Andreasen ◽  
Martin Schou Pedersen ◽  
Henrik Westh ◽  
Lotte Jelsbak ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Gene Amplification ◽  
Copy Number ◽  
Chromosomal Location ◽  
Sequencing Data ◽  
Pcr Screening ◽  
E Coli ◽  
Oxford Nanopore ◽  
Additional Strain ◽  
Resistance To Penicillin

Abstract Background bla TEM-1 encodes a narrow-spectrum β-lactamase that is inhibited by β-lactamase inhibitors and commonly present in Escherichia coli. Hyperproduction of blaTEM-1 may cause resistance to penicillin/β-lactamase inhibitor (P/BLI) combinations. Objectives To characterize EC78, an E. coli bloodstream isolate, resistant to P/BLI combinations, which contains extensive amplification of blaTEM-1 within the chromosome. Methods EC78 was sequenced using Illumina and Oxford Nanopore Technology (ONT) methodology. Configuration of blaTEM-1 amplification was probed using PCR. Expression of blaTEM-1 mRNA was determined using quantitative PCR and β-lactamase activity was determined spectrophotometrically in a nitrocefin conversion assay. Growth rate was assessed to determine fitness and stability of the gene amplification was assessed by passage in the absence of antibiotics. Results Illumina sequencing of EC78 identified blaTEM-1B as the only acquired β-lactamase preceded by the WT P3 promoter and present at a copy number of 182.6 with blaTEM-1B bracketed by IS26 elements. The chromosomal location of the IS26-blaTEM-1B amplification was confirmed by ONT sequencing. Hyperproduction of blaTEM-1 was confirmed by increased transcription of blaTEM-1 and β-lactamase activity and associated with a significant fitness cost; however, the array was maintained at a relatively high copy number for 150 generations. PCR screening for blaTEM amplification of isolates resistant to P/BLI combinations identified an additional strain containing an IS26-associated amplification of a blaTEM gene. Conclusions IS26-associated amplification of blaTEM can cause resistance to P/BLI combinations. This adaptive mechanism of resistance may be overlooked if simple methods of genotypic prediction (e.g. gene presence/absence) are used to predict antimicrobial susceptibility from sequencing data.

Sign in / Sign up

Export Citation Format

Share Document