scholarly journals Is Palmer's elm leaf goldenrod real? The Angiosperms353 kit provides within-species signal in Solidago ulmifolia s.l.

2021 ◽  
Author(s):  
James B Beck ◽  
Morgan L Markley ◽  
Mackenzie G Zielke ◽  
Justin R Thomas ◽  
Haley J Hale ◽  
...  
Keyword(s):  
Multivariate Analysis ◽  
Genetic Divergence ◽  
Clustering Analysis ◽  
Morphological Data ◽  
Herbarium Specimens ◽  
Species Status ◽  
Genetic Groups ◽  
The Status ◽  
Distinct Taxon ◽  
Sheer Number

The genus Solidago represents a taxonomically challenging group due to its sheer number of species, putative hybridization, polyploidy, and shallow genetic divergence among species. Here we use a dataset obtained exclusively from herbarium specimens to evaluate the status of Solidago ulmifolia var. palmeri, a morphologically subtle taxon potentially confined to Alabama, Arkansas, Mississippi, and Missouri. A multivariate analysis of both discrete and continuous morphological data revealed no clear distinction between S. ulmifolia var. palmeri and Solidago ulmifolia var. ulmifolia. Solidago ulmifolia var. palmeri status was also assessed with a phylogenomic and SNP clustering analysis of data generated with the Angiosperms353 probe kit. Neither analysis supported Solidago ulmifolia var. palmeri as a distinct taxon, and we suggest that this name should be discarded. The status of Solidago delicatula (formerly known as Solidago ulmifolia var. microphylla) was also assessed. Both morphological and phylogenic analyses supported the species status of S. delicatula and we suggest maintaining this species at its current rank. These results highlight the utility of the Angiosperms353 probe kit, both with herbarium tissue and at lower taxonomic levels. Indeed, this is the first study to utilize this kit to identify genetic groups within a species.

scholarly journals Are Palmer’s Elm-Leaf Goldenrod and the Smooth Elm-Leaf Goldenrod Real? The Angiosperms353 Kit Provides Within-Species Signal in Solidago ulmifolia s. l.

2021 ◽  
Vol 46 (4) ◽  
pp. 1107-1113
Author(s):  
James B. Beck ◽  
Morgan L. Markley ◽  
Mackenzie G. Zielke ◽  
Justin R. Thomas ◽  
Haley J. Hale ◽  
...  
Keyword(s):  
Multivariate Analysis ◽  
Clustering Analysis ◽  
Phylogenetic Analyses ◽  
Morphological Data ◽  
Herbarium Specimens ◽  
Species Status ◽  
Genetic Groups ◽  
The Status ◽  
Distinct Taxon ◽  
Sheer Number

Abstract— The genus Solidago represents a taxonomically challenging group due to its sheer number of species, putative hybridization, polyploidy, and shallow genetic divergence among species. Here we use a dataset obtained exclusively from herbarium specimens to evaluate the status of Solidago ulmifolia var. palmeri, a morphologically subtle taxon potentially confined to Alabama, Arkansas, Mississippi, and Missouri. A multivariate analysis of both discrete and continuous morphological data revealed no clear distinction between S. ulmifolia var. palmeri and Solidago ulmifolia var. ulmifolia. Solidago ulmifolia var. palmeri’s status was also assessed with a phylogenomic and SNP clustering analysis of data generated with the “Angiosperms353” probe kit. Neither analysis supported Solidago ulmifolia var. palmeri as a distinct taxon, and we suggest that this name should be discarded. The status of Solidago delicatula (formerly known as Solidago ulmifolia var. microphylla) was also assessed. Both morphological and phylogenetic analyses supported the species status of S. delicatula and we suggest maintaining this species at its current rank. These results highlight the utility of the Angiosperms353 probe kit, both with herbarium tissue and at lower taxonomic levels. Indeed, this is the first study to utilize this kit to identify genetic groups within a species.

scholarly journals Is the Murciano-Granadina a single goat breed? A molecular genetics approach

2010 ◽  
Vol 62 (5) ◽  
pp. 1191-1198 ◽  
Author(s):  
A.M. Martínez ◽  
J.L. Vega-Pla ◽  
J.M. León ◽  
M.E. Camacho ◽  
J.V. Delgado ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Multivariate Analysis ◽  
Population Structure ◽  
Genetic Differentiation ◽  
Success Rate ◽  
Molecular Genetics ◽  
Clustering Analysis ◽  
Genetic Evaluation ◽  
Goat Breed ◽  
Genetic Groups

The population structure of the Murciano-Granadina breed was determined using 25 microsatellites from 266 goats of seven populations. The results of the genetic differentiation analysis showed that it is possible to differentiate the Murciana and Granadina populations even though a low F ST value (0.0432) had been obtained. Individuals could be assigned to their populations with a success rate of more than 80%. Bayesian-based clustering analysis of allele frequencies and multivariate analysis revealed that Murciana and Granadina populations were grouped in different clusters since K=3. The results demonstrate that Murciana and Granadina are still two different genetic groups included into Murciano-Granadina denomination. There is the opportunity to the genetically manage these populations, under a single herd-book but adding the necessary modifications to respect the conservation of the genetic diversity based on the use of multibreed models of genetic evaluation.

Morphological and genetic variation in Centrolepis paludicola and C. monogyna (Centrolepidaceae)

1999 ◽  
Vol 12 (5) ◽  
pp. 679 ◽  
Author(s):  
J. Cambecèdes ◽  
R. E. Vaillancourt ◽  
B. M. Potts
Keyword(s):  
Multivariate Analysis ◽  
Genetic Variation ◽  
Molecular Markers ◽  
Morphological Data ◽  
Species Status ◽  
Variable Species ◽  
The Common ◽  
Local Differentiation ◽  
Vegetative Characters ◽  
High Level

Centrolepis paludicola is a small cushion-forming herb which is listed as an endangered species. However, some taxonomists have questioned its species status and treat it as a subspecies of the common C. monogyna. Morphological measurements were taken on plants from 50 cushions collected from 31 sites throughout Tasmania, and included C. paludicola, C. monogyna and C. fascicularis as an outgroup to resolve this taxonomic issue. While C. fascicularis was distinct in all morphological analyses, the sympatric C. paludicola and C. monogyna could not be clearly distinguished on the basis of the reproductive and vegetative characters that are supposed to separate them. Centrolepis monogyna is henceforth interpreted as a morphologically variable species which includes C. paludicola. Once it was shown that these are best treated as one species, RAPD molecular markers were used to analyse genetic variation between populations. This analysis revealed a high level of polymorphism between cushions. As in the multivariate analysis of morphological data, C. monogyna and C. paludicola containing cushions were indistinguishable. However, there was a strong geographical structure to the genetic variation in the C. monogyna/C. paludicola group, consistent with a model in which gene flow between populations is limited and local differentiation has occurred.

scholarly journals Genetic divergence and speciation within Ziziphora capitata (Lamiaceae): Molecular and micromorphological evidences

2018 ◽  
Vol 19 (2) ◽  
pp. 697-705 ◽  
Author(s):  
RAHELEH TABARIPOUR ◽  
MASOUD SHEIDAI ◽  
SEYED MEHDI TALEBI ◽  
ZAHRA NOORMOHAMMADI
Keyword(s):  
Genetic Divergence ◽  
Phylogenetic Trees ◽  
Phylogenetic Analyses ◽  
Morphological Data ◽  
Population Substructure ◽  
Molecular Characteristics ◽  
Separate Species ◽  
Taxonomic Rank ◽  
Genetic Groups ◽  
Traditional Taxonomy

Tabaripour R, Sheidai M, Talebi SM, Noormohammadi Z. 2018. Genetic divergence and speciation within Ziziphora capitata (Lamiaceae): Molecular and micromorphological evidences. Biodiversitas 19: 697-705. Ziziphora capitata is a member of the Mint family (Lamiaceae) that naturally grows in various regions. Different subspecies have been reported for this species, from which two are recorded from Iran: Z. capitata subsp. capitata, and Z. capitata subsp. orientalis. In the present study, morphological, palynological and molecular (ISSR and cp-DNA) data were used to reveal speciation within this species and reconsider taxonomic rank of its presumed subspecies. The obtained results revealed a great difference between two presumed subsp. of Z. capitata. These taxa differed in morphological, palynological and molecular characteristics. Statistical and bioinformatics tests revealed significant genomic difference between them and phylogenetic analyses showed that they have a close affinity to some other Ziziphora species (out-groups used), then to each other. Bayesian and maximum parsimony phylogenetic trees differentiated the presumed sub-species of Z. capitata. Moreover, K-Means clustering and Bayesian analysis of genetic groups by Evanno test (optimal k) supported the presence of two distinct genetic groups within Z. capitata. This approach objectively defines a threshold separating intraspecific population substructure from interspecific divergence, which is the general aim of species delimitation studies. Therefore, the present study provides enough evidence for introducing two separate species within Z. capitata based on the traditional taxonomy as well as combination of molecular and micro-morphological data.

First Records of Bufo luchunnicus (Yang et Rao, 2008) and Amolops wenshanensis Yuan, Jin, Li, Stuart et Wu, 2018 (Anura: Bufonidae, Ranidae) from Vietnam

2020 ◽  
Vol 27 (2) ◽  
pp. 81-86
Author(s):  
Cuong The Pham ◽  
Minh Duc Le ◽  
Chung Van Hoang ◽  
Anh Van Pham ◽  
Thomas Ziegler ◽  
...  
Keyword(s):  
Natural History ◽  
Genetic Divergence ◽  
Morphological Data ◽  
Type Series ◽  
Lao Cai ◽  
First Time ◽  
Nd2 Gene ◽  
Quang Ninh

We record two species of amphibians for the first time from Vietnam: Bufo luchunnicus from Lao Cai and Son La provinces and Amolops wenshanensis from Quang Ninh Province. Morphologically, the Vietnamese representatives of B. luchunnicus resemble the type series from China. The specimen of A. wenshanensis from Vietnam slightly differs from the type series from China by having a smaller size (SVL 33.2 mm vs. 35.7 – 39.9 mm in males) and the presence of distinct transverse bands on the dorsal surfaces of limbs. Genetic divergence between the sequence of the Vietnamese specimen and those of A. wenshanensis from China available from GenBank is 1.2 – 1.6% (ND2 gene). In addition, morphological data and natural history notes of aforementioned species are provided from Vietnam.

scholarly journals GENETIC DIVERGENCE AND MORPHO-AGRONOMIC PERFORMANCE OF JATROPHA CURCAS L. CLONES FOR SELECTION OF CLONAL VARIETIES

2016 ◽  
Vol 29 (4) ◽  
pp. 841-849
Author(s):  
ADRIANA QUEIROZ DE ALMEIDA ◽  
SIMONE ALVES SILVA ◽  
VANESSA DE OLIVEIRA ALMEIDA ◽  
DEOCLIDES RICARDO DE SOUZA ◽  
GILMARA DE MELO ARAÚJO
Keyword(s):  
Genetic Diversity ◽  
Multivariate Analysis ◽  
Plant Height ◽  
Genetic Divergence ◽  
Morphological Characterization ◽  
Stem Diameter ◽  
Agronomic Performance ◽  
And Performance ◽  
Lower Contribution ◽  
Selection Of

ABSTRACT The knowledge about genetic diversity of jatropha crop is important for genetic conservation resources and breeding of this species. The aim of this study was to evaluate the genetic diversity and performance of jatropha clones through morphological characterization to selection of clonal varieties for biofuels production. The clones were obtained through shoot cuttings from previous selection in a population of half-sibs progenies. The morphoagronomic analyses of clones was carried out at 180 days after transplantation and were evaluated plant height, stem diameter, number of primary branches and number of secondary branches, number of bunches and number of fruits per plant. Evaluating clones performance, significant results were found for the number of secondary branches. About analysis of genetic diversity, the measures of dissimilarity genetic varied from 0.62 to 13.11, this way, the UFRBPR14 and UFRBPR15 clones were more divergent. The Tocher method was efficient to verify formation of four groups. The characteristics that most contributed to the divergence among clones were branches number, height and number of bunches, and, stem diameter had lower contribution. The jatropha clones differed only in the secondary branches number and multivariate analysis showed divergence among the jatropha clones with formation of four groups. Also, branches number, plant height and number of bunches were characteristic that contributed to genetic divergence.

scholarly journals Indigenous vascular plants of the Soutpansberg, South Africa

Bothalia ◽  
2019 ◽  
Vol 49 (1) ◽  
Author(s):  
Norbert Hahn
Keyword(s):  
South Africa ◽  
Conservation Planning ◽  
Vascular Plants ◽  
Biosphere Reserve ◽  
Herbarium Specimens ◽  
Mountain Range ◽  
Floristic Diversity ◽  
Literature Reviews ◽  
The Status ◽  
Herbarium Collections

Background: The first checklist for the Soutpansberg was published in 1946, and the second list was compiled by the author in 2006 as part of his doctoral thesis. Currently, there is a need for an updated account of the biodiversity of the Soutpansberg Centre of Endemism and Diversity for conservation planning in the Vhembe Biosphere Reserve, within which the Soutpansberg is the principle geomorphological feature.Objectives: To present an updated list of vascular plants recorded for the Soutpansberg.Method: The list was compiled from various sources including literature reviews, herbarium specimens, herbarium databases and personal observations.Results: This article presents the most geographically accurate and taxonomically updated list of the indigenous vascular flora of the Soutpansberg, the northernmost mountain range of South Africa. Altogether 2443 taxa are recorded belonging to 922 genera in 187 families and 64 orders.Conclusion: The list presented in this article confirms the status of the Soutpansberg as a centre of floristic diversity in southern Africa. Notable is the higher-order diversity of the flora. It is likely that both future surveys and reviews of herbarium collections will add new taxa to the current total.

Nickel-hyperaccumulating species of Phyllanthus (Phyllanthaceae) from the Philippines

2015 ◽  
Vol 63 (2) ◽  
pp. 103 ◽  
Author(s):  
Marilyn O. Quimado ◽  
Edwino S. Fernando ◽  
Lorele C. Trinidad ◽  
Augustine Doronila
Keyword(s):  
Nickel Content ◽  
Natural Populations ◽  
Translocation Factor ◽  
The Philippines ◽  
Conservation Strategy ◽  
Herbarium Specimens ◽  
Santa Cruz ◽  
Botanical Exploration ◽  
The Status ◽  
Root Tissues

Botanical exploration on ultramafic sites in Palawan, Surigao and Zambales has resulted in the discovery of a new hypernickelophore species (nickel (Ni) concentration >1%) of Phyllanthus (Phyllanthaceae). This paper reports in detail the Ni uptake of populations of P. erythrotrichus in Candelaria, Masinloc and Santa Cruz, Zambales, and confirms the status of P. securinegoides in Taganito, Surigao del Norte, which had been analysed only through herbarium specimens, and these were compared with a known hypernickelophore, P. balgooyi, which was collected in Narra and Puerto Princesa, Palawan. Nickel content of the dried leaves, stems and root tissues was quantified using atomic absorption spectrophotometer. P. erythrotrichus and P. securinegoides both had more than 10 000 µg g–1 Ni in the leaves, whereas the roots had 1195 µg g–1 and 4636 µg g–1. P. balgooyi accumulated 6319 µg g–1 of Ni in the leaves, whereas the roots had a higher Ni concentration of up to 8116 µg g–1, respectively. All three species had values of translocation factor and enrichment factor of >1.0, implying that all species have great potential in phytoremediation, specifically, phytoextraction of Ni. These three species of Phyllanthus are prominent in ultramafic scrub communities and, hence, should be used in ecological restoration of mined-out Ni lateritic areas. The implications of the unique adaptation of these species are also discussed in relation to a conservation strategy for their natural populations.

A revision of the Rhododendron taipaoense complex (subg. Tsutsusi sect. Tsutsusi, Ericaceae), based on observations of morphological characters and seed micromorphology

Phytotaxa ◽  
2013 ◽  
Vol 92 (2) ◽  
pp. 25
Author(s):  
XIAO-FENG JIN ◽  
BING-YANG DING ◽  
YING-YING ZHOU ◽  
SHUI-HU JIN ◽  
WANG-WEI YANG
Keyword(s):  
Morphological Characters ◽  
Principal Coordinate Analysis ◽  
Morphological Data ◽  
Herbarium Specimens ◽  
Leaf Color ◽  
Flower Number ◽  
Seed Shape ◽  
Corolla Length ◽  
Seed Micromorphology ◽  
Different Populations

In this paper, we present a revision of the Rhododenron taipaoense complex, including R. taipaoense and eight other named species, based on literature survey, field collections and observations, inspection of herbarium specimens, statistical analysis of morphological characters, and SEM observation of seed shape and testa. We evaluated all characters that have previously been used to diagnose these species: indumentum of young shoots and abaxial surfaces of leaves; filament dimensions; style base; leaf color, size, and apex shape; flower number per inflorescence; corolla length; and length of the stamen and pistil. Cluster analysis of 146 individuals showed that individuals from different populations are interdigitated, irrespective of traditional taxonomic limits. Analysis of morphological data using principal coordinate analysis (PCoA) likewise shows a continual gradation between populations, rather than disjunctures between named species. Consequently, only one species is recognized in the present paper, and R. apricum, R. falcinellum (R. apricum var. falcinellum), R. florulentum, R. hepticum, R. piceum, R. rufulum, R. spadiceum, and R. rufoindumentum (nom. nud.) are all reduced to synonyms of R. taipaoense.

Studies in Australian amphibia II..Taxonomy, ecology and evolution of the genus Heleioporus Gray (Anura : Leptodactylidae)

1967 ◽  
Vol 15 (2) ◽  
pp. 367 ◽  
Author(s):  
AK Lee
Keyword(s):  
Species Status ◽  
Breeding Sites ◽  
Ephemeral Ponds ◽  
Mating Call ◽  
The Status ◽  
Water Courses ◽  
Species Groups ◽  
Western Australian ◽  
Winter Rain

The status of the five existing species of the genus Heleioporus Gray, H. albopunctatus Gray, H. australiacus (Shaw), H. eyrei (Gray), H. inornatus Lee & Main, and H. psammophilus Lee & Main are confirmed on the basis of morphological and behavioural criteria and the results of interpopulation in vitro crosses. The Western Australian population, formerly included under H. australiacus, is raised to species status on the basis of consistent differences in morphology and mating call. Each species is redescribed, and descriptions of the larvae and juveniles are included. The results of in vitro crosses support the recognition of two species groups, a bassian group comprising H. australiacus, the H. australiacus-like frog, and H. inornatus, and an eyrean group comprising H. albopunctatus, H. eyrei, and H. psammophilus. The breeding biology of all of the western species appears closely tied to the Mediterranean climate of south-western Australia. All species breed in April and May. Rain sufficient to moisten the soil, and declining temperatures are the two most obvious environmental factors influencing the timing of breeding. Breeding sites include ephemeral ponds and water courses, and the edges of coastal lakes. Breeding occurs before these are covered by water, in winter. Males call from burrows, and copulation, oviposition, and embryonic development all occur at the bottom of these burrows. Where they occur together, the burrows of H. albopunctatus, H. eyrei, and H. psammophilus are found scattered through the centre of a swamp and those of H. inornatus, around the periphery. The eggs are laid in froth, and development to hatching takes between 1 and 3 weeks. Hatching may be delayed by withholding the eggs from water. The period between the onset of calling and hatching of the embryos roughly corresponds to the period between the onset of winter rain and the flooding of larval sites. The larvae of H. albopunctatus, H. eyrei, and H, psammophilus are found in ponds, those of H. inornatus in collapsed, flooded breeding burrows, and those of H. australiacus and the H. australiacus-like frog in creeks.

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