scholarly journals Evolutionary Dynamics, Evolutionary Forces, and Robustness: A Nonequilibrium Statistical Mechanics Perspective

2021 ◽  
Author(s):  
Riccardo Rao ◽  
Stanislas Leibler
Keyword(s):  
Laboratory Experiments ◽  
Evolutionary Dynamics ◽  
Nonequilibrium Statistical Mechanics ◽  
Thermodynamic Process ◽  
General Phenomenon ◽  
Evolutionary Forces ◽  
The Past ◽  
Selection Dynamics ◽  
Selection For ◽  
Selection Of

Any realistic evolutionary theory has to consider: (i) the dynamics of organisms that reproduce and possess heritable traits; (ii) the appearance of stochastic variations in these traits; and (iii) the selection of those organisms that better survive and reproduce. These elements shape the “evolutionary forces” that characterize the evolutionary dynamics. Here, we introduce a general model of reproduction–variation–selection dynamics. By treating these dynamics as a non-equilibrium thermodynamic process, we make precise the notion of the forces that characterize evolution. One of these forces, in particular, can be associated with the robustness of reproduction to variations. The emergence of this trait in our model—without any explicit selection for it—is an example of a general phenomenon, which can be called enaptation, distinct from the well-known and studied phenomena of adaptation and exaptation. Some of the detailed predictions of our model can be tested by quantitative laboratory experiments, similar to those performed in the past on evolving populations of proteins or viruses.

Habitat selection by the Puerto Rican yellow-chinned anole, Anolis gundlachi

2005 ◽  
Vol 83 (7) ◽  
pp. 983-988 ◽  
Author(s):  
Javier A Rodríguez-Robles ◽  
Manuel Leal ◽  
Jonathan B Losos
Keyword(s):  
Habitat Selection ◽  
Habitat Use ◽  
Puerto Rican ◽  
Visual Cues ◽  
Evolutionary Dynamics ◽  
Males And Females ◽  
Selection For ◽  
Free Ranging ◽  
Woody Substrates ◽  
Selection Of

Habitat selection can directly affect the fitness of an individual and the evolutionary dynamics of the population to which that organism belongs. We studied habitat use of the Puerto Rican yellow-chinned anole (Anolis gundlachi Peters, 1876) to examine whether this arboreal lizard uses its environment in a nonrandom manner. Males and females preferred woody vegetation substrates over nonwoody plants and sierra palms (Prestoea acuminata var. montana (Graham) A. Henderson and G. Galeano) as perching sites, and they also selected wider vegetation than what was randomly available. Selection for minimizing conspicuousness to potential predators and for increased locomotion capacity may help explain the preference for woody substrates and broader surfaces, respectively. Anolis gundlachi relies almost exclusively on visual cues for foraging and social interactions, and using wider perches also increases an individual's ability to scan a larger proportion of its territory. Our findings thus indicate that the nonrandom habitat use of free-ranging A. gundlachi leads to the selection of perching substrates that may increase performance of ecologically relevant capabilities.

scholarly journals Understanding evolutionary dynamics of phosphorylation with fungal species as model system

2017 ◽  
Author(s):  
Wenfa Ng
Keyword(s):  
Natural Selection ◽  
Protein Phosphorylation ◽  
Conformational Changes ◽  
Protein Function ◽  
Evolutionary Dynamics ◽  
Fungal Species ◽  
Cellular Level ◽  
Evolutionary Forces ◽  
Selection Factors ◽  
Selection Of

Movement in proteins requires energy. To this end, natural selection has selected phosphate as the principal energy currency in cells. On the other hand, depicting the state of transcription could come in the form of epigenetic markers, which are modifications on nucleotide residues. But, what are the deeper evolutionary forces that underpin the selection of phosphorylation as a key process for translating molecular information of cellular state into specific phenotype in movement and metabolism at the cellular level? From another perspective, what are the factors that guide the selection of particular phosphosites as principal phosphorylation sites? Seeking answers to the latter question, Villen and coworkers (“Evolution of protein phosphorylation across 18 fungal species”, Science, Link ) used mass spectrometry to profile the phosphoproteome of 18 fungal species and employed discovery science approaches to elucidate specific phosphosite highly conserved for particular functions such as transcription and translation. Using histone protein (H2) and transcription initiator factor (eIF4E) as model proteins for gaining a deeper understanding of the evolutionary forces that shape the annotation of specific phosphosite (from a large library of possible phosphosites) as key molecular effectors of cellular processes such as conformational changes in enzymes and ion channels. Results obtained suggests possible selection forces that define particular phosphosite for function, which are corroborated through assessing kinase motif usage and biochemical assays for the binding affinity between peptide libraries and cell lysates. Looking at a broader landscape of protein phosphorylation, the paper, however, does not yield sufficient insights to answer questions such as how protein phosphorylation first emerged as a defining mechanism for translating stored cellular energy in phosphate groups into movement necessary for protein function and, by extension, that of the cell. Understanding the evolutionary processes that first potentiated protein phosphorylation as well as the specific natural selection factors that resulted in the definition of specific phosphosite for particular function are fundamental questions important to understanding how biology utilizes chemical and physical principles for powering life.

scholarly journals Understanding evolutionary dynamics of phosphorylation with fungal species as model system

2017 ◽  
Author(s):  
Wenfa Ng
Keyword(s):  
Natural Selection ◽  
Protein Phosphorylation ◽  
Conformational Changes ◽  
Protein Function ◽  
Evolutionary Dynamics ◽  
Fungal Species ◽  
Cellular Level ◽  
Evolutionary Forces ◽  
Selection Factors ◽  
Selection Of

Movement in proteins requires energy. To this end, natural selection has selected phosphate as the principal energy currency in cells. On the other hand, depicting the state of transcription could come in the form of epigenetic markers, which are modifications on nucleotide residues. But, what are the deeper evolutionary forces that underpin the selection of phosphorylation as a key process for translating molecular information of cellular state into specific phenotype in movement and metabolism at the cellular level? From another perspective, what are the factors that guide the selection of particular phosphosites as principal phosphorylation sites? Seeking answers to the latter question, Villen and coworkers (“Evolution of protein phosphorylation across 18 fungal species”, Science, Link ) used mass spectrometry to profile the phosphoproteome of 18 fungal species and employed discovery science approaches to elucidate specific phosphosite highly conserved for particular functions such as transcription and translation. Using histone protein (H2) and transcription initiator factor (eIF4E) as model proteins for gaining a deeper understanding of the evolutionary forces that shape the annotation of specific phosphosite (from a large library of possible phosphosites) as key molecular effectors of cellular processes such as conformational changes in enzymes and ion channels. Results obtained suggests possible selection forces that define particular phosphosite for function, which are corroborated through assessing kinase motif usage and biochemical assays for the binding affinity between peptide libraries and cell lysates. Looking at a broader landscape of protein phosphorylation, the paper, however, does not yield sufficient insights to answer questions such as how protein phosphorylation first emerged as a defining mechanism for translating stored cellular energy in phosphate groups into movement necessary for protein function and, by extension, that of the cell. Understanding the evolutionary processes that first potentiated protein phosphorylation as well as the specific natural selection factors that resulted in the definition of specific phosphosite for particular function are fundamental questions important to understanding how biology utilizes chemical and physical principles for powering life.

Identifying Measurement Invariant Item Sets in Cross-Cultural Settings Using an Automated Item Selection Procedure

Methodology ◽  
2018 ◽  
Vol 14 (4) ◽  
pp. 177-188 ◽  
Author(s):  
Martin Schultze ◽  
Michael Eid
Keyword(s):  
Measurement Invariance ◽  
Optimal Solution ◽  
Selection Procedure ◽  
Cross Cultural ◽  
Item Selection ◽  
Ant System ◽  
Item Quality ◽  
Ant System Algorithm ◽  
Selection For ◽  
Selection Of

Abstract. In the construction of scales intended for the use in cross-cultural studies, the selection of items needs to be guided not only by traditional criteria of item quality, but has to take information about the measurement invariance of the scale into account. We present an approach to automated item selection which depicts the process as a combinatorial optimization problem and aims at finding a scale which fulfils predefined target criteria – such as measurement invariance across cultures. The search for an optimal solution is performed using an adaptation of the [Formula: see text] Ant System algorithm. The approach is illustrated using an application to item selection for a personality scale assuming measurement invariance across multiple countries.

Integrated FAHP-VIKOR model for green supplier selection in a Nickle coating SME

2020 ◽  
pp. 133-139
Author(s):  
Sanatan Ratna ◽  
B Kumar
Keyword(s):  
Staff Training ◽  
Supplier Selection ◽  
Fuzzy Ahp ◽  
Research Work ◽  
Supplier Evaluation ◽  
Green Supplier Selection ◽  
The Past ◽  
Coating Industry ◽  
Sustainability Issue ◽  
Selection Of

In the past few decades, there has been lot of focus on the issue of sustainability. This has occurred due to the growing concerns related to climate change and the growing awareness about environmental concerns. Also, the competition at global level has led to the search for the most sustainable route in the industries. The current research work deals with the selection of green supplier in a Nickle coating industry based on certain weighted green attributes. For this purpose, a hybrid tool comprising of Fuzzy AHP (Fuzzy Analytical Hierarchy) and VIKOR (VlseKriterijumska Optimizacija I Kompromisno Resenje) is used. The Fuzzy AHP is used for assigning proper weights to the selected criteria for supplier evaluation, while VIKOR is used for final supplier selection based on the weighted criteria. The three criterions for green supplier selection are, Ecological packaging, Corporate socio-environmental responsibility and Staff Training. The outcome of the integrated model may serve as a steppingstone to other SMEs in different sectors for selecting the most suitable supplier for addressing the sustainability issue.

ESTIMASI NILAI HERITABILITAS BOBOT IKAN MAS VARIETAS PUNTEN DALAM PROGRAM SELEKSI INDIVIDU

2016 ◽  
Vol 11 (3) ◽  
pp. 217
Author(s):  
Estu Nugroho ◽  
Budi Setyono ◽  
Mochammad Su’eb ◽  
Tri Heru Prihadi
Keyword(s):  
Body Weight ◽  
Selection Response ◽  
Base Population ◽  
Breeding Programs ◽  
Male And Female ◽  
Body Weight Trait ◽  
Population Selection ◽  
Selection For ◽  
Weight Trait ◽  
Selection Of

Program pemuliaan ikan mas varietas Punten dilakukan dengan seleksi individu terhadap karakter bobot ikan. Pembentukan populasi dasar untuk kegiatan seleksi dilakukan dengan memijahkan secara massal induk ikan mas yang terdiri atas 20 induk betina dan 21 induk jantan yang dikoleksi dari daerah Punten, Kepanjen (delapan betina dan enam jantan), Kediri (tujuh betina dan 12 jantan), Sragen (27 betina dan 10 jantan), dan Blitar (15 betina dan 11 jantan). Larva umur 10 hari dipelihara selama empat bulan. Selanjutnya dilakukan penjarangan sebesar 50% dan benih dipelihara selama 14 bulan untuk dilakukan seleksi dengan panduan hasil sampling 250 ekor individu setiap populasi. Seleksi terhadap calon induk dilakukan saat umur 18 bulan pada populasi jantan dan betina secara terpisah dengan memilih berdasarkan 10% bobot ikan yang terbaik. Calon induk yang terseleksi kemudian dipelihara hingga matang gonad, kemudian dipilih sebanyak 150 pasang dan dipijahkan secara massal. Didapatkan respons positif dari hasil seleksi berdasarkan bobot ikan, yaitu 49,89 g atau 3,66% (populasi ikan jantan) dan 168,47 g atau 11,43% (populasi ikan betina). Nilai heritabilitas untuk bobot ikan adalah 0,238 (jantan) dan 0,505 (betina).Punten carp breeding programs were carried out by individual selection for body weight trait. The base population for selection activities were conducted by mass breeding of parent consisted of 20 female and 21 male collected from area Punten, eight female and six male (Kepanjen), seven female and 12 male (Kediri), 27 female and 10 male (Sragen), 15 female and 11 male (Blitar). Larvae 10 days old reared for four moths. Then after spacing out 50% of total harvest, the offspring reared for 14 months for selection activity based on the sampling of 250 individual each population. Selection of broodstock candidates performed since 18 months age on male and female populations separately by selecting based on 10% of fish with best body weight. Candidates selected broodstocks were then maintained until mature. In oder to produce the next generation 150 pairs were sets and held for mass spawning. The results revealed that selection response were positive, 49.89 g (3.66%) for male and 168.47 (11.43%) for female. Heritability for body weight is 0.238 (male) and 0.505 (female).

Evaluation of Large-Sunflower Lines of Sunflower on Quantitative Morphological Traits

2020 ◽  
pp. 46-55
Keyword(s):  
Fertility Restoration ◽  
Morphological Characters ◽  
Direct Selection ◽  
Oilseed Crops ◽  
Turkish Origin ◽  
Self Pollination ◽  
Special Area ◽  
Pericarp Color ◽  
Selection For ◽  
Selection Of

Confectionery sunflower - a special area of use of sunflower, which requires the creation of marketable seeds quality features. One of the possible ways to create large-fruited sunflower is to create production hybrids and lines. Objective: to evaluate the created new large-fruited sunflower lines by a complex of morphological characters and determine the best lines for use as large-seeds hybrids as parent components or source material. In 2016-2019 years on the basis of the Institute of Oilseed Crops NAAS a study was conducted to assess the economic characteristics of large-fruited sunflower lines. We studied a collection of 27 lines of large-seeds sources. The lines were created by direct selection or crossing and sampling: Reyny of Argentinean origin, Zaporizhzhya confectionery variety, confectionery hybrid with striped pericarp color of Israeli origin, white seed of Turkish origin, synthetic population - donor of complex resistance. To study from the collection, lines were drawn that went through at least 7 generations with selection for seed size. Experience has shown that the shortest growing season for lines 174d and KP11 was 99 days, and the longest for lines I2K670 was 109 days. In the studied collection, the greatest mass of 1000 seeds has the KP11-146.47g line, which is the mother component and does not have branching. The second by weight of 1000 seeds (109 g) stood out line 168v, which also had branches and pollen fertility restoration genes and will be used as the paternal form. The third largest is also one basket line ZKN51-100. The collection included lines originating from the same combination, but with a different morphotype for the presence and absence of branching. So, based on the combination of KP11 x Zaporizhzhya Confectionery, three lines were obtained. A mass of 1000 seeds was observed in 98-86 g, with the branching line having the largest mass of 1000 seeds. The lines created with one combination VK678 x ZKN32: with a branch 168a had a mass of 1000 seeds 95g, and a line 168b - without a branch 109 g. Of the two lines obtained from the descendants of the combination KP11 x the striped hybrid both had branches, but the seeds were much smaller (weight of 1000 seeds 59 and 79 g). The collection also studied samples created on the basis of varieties and populations 160c, 174, 175b, the mass of 1000 seeds of which turned out to be more acceptable for large-fruited use from 83 to 99 g. Summing up the results of studying the collection of newly created lines, we can highlight the lines 162d, 168v, 175b, KP11 that are potentially promising for use in hybrids. The selections showed that large-fruited lines can be obtained from large-fruited varieties, self-pollination of large-fruited hybrids and crossing lines with hybrids and varieties. Self-pollination and selection of large-fruited lines in several generations does not provide the necessary variability for positive changes in selections. The result of the selection by weight of 1000 seeds in the offspring from crosses and from populations creates opportunities for new large-seeds sunflower.

A Scientific Search for Altruism

2018 ◽  
Author(s):  
C. Daniel Batson
Keyword(s):  
Human Nature ◽  
Scientific Method ◽  
Laboratory Experiments ◽  
Fundamental Question ◽  
Empathic Concern ◽  
Altruistic Motivation ◽  
The Past ◽  
Past Half Century ◽  
Series Of Experiments ◽  
Past Half

This book provides an example of how the scientific method can be used to address a fundamental question about human nature. For centuries—indeed for millennia—the egoism–altruism debate has echoed through Western thought. Egoism says that the motivation for everything we do, including all of our seemingly selfless acts of care for others, is to gain one or another self-benefit. Altruism, while not denying the force of self-benefit, says that under certain circumstances we can care for others for their sakes, not our own. Over the past half-century, social psychologists have turned to laboratory experiments to provide a scientific resolution of this human nature debate. The experiments focused on the possibility that empathic concern—other-oriented emotion elicited by and congruent with the perceived welfare of someone in need—produces altruistic motivation to remove that need. With carefully constructed experimental designs, these psychologists have tested the nature of the motivation produced by empathic concern, determining whether it is egoistic or altruistic. This series of experiments has provided an answer to a fundamental question about what makes us tick. Framed as a detective story, the book traces this scientific search for altruism through the numerous twists and turns that led to the conclusion that empathy-induced altruism is indeed part of our nature. It then examines the implications of this conclusion—negative implications as well as positive—both for our understanding of who we are as humans and for how we might create a more humane society.

Evidence-based Assessment

2010 ◽  
pp. 76-98
Author(s):  
John Hunsley ◽  
Eric J. Mash
Keyword(s):  
Decision Making ◽  
Clinical Assessment ◽  
Assessment Process ◽  
Evidence Based ◽  
The Past ◽  
Specific Assessment ◽  
The Many ◽  
Selection Of ◽  
Made In

Evidence-based assessment relies on research and theory to inform the selection of constructs to be assessed for a specific assessment purpose, the methods and measures to be used in the assessment, and the manner in which the assessment process unfolds. An evidence-based approach to clinical assessment necessitates the recognition that, even when evidence-based instruments are used, the assessment process is a decision-making task in which hypotheses must be iteratively formulated and tested. In this chapter, we review (a) the progress that has been made in developing an evidence-based approach to clinical assessment in the past decade and (b) the many challenges that lie ahead if clinical assessment is to be truly evidence-based.

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