Transfer Learning Approach for the Classification of Conidial Fungi (Genus Aspergillus) Thru Pre-trained Deep Learning Models

2020 ◽  
Author(s):  
Matt Ervin Mital ◽  
Rogelio Ruzcko Tobias ◽  
Herbert Villaruel ◽  
Jose Martin Maningo ◽  
Robert Kerwin Billones ◽  
...  
Keyword(s):  
Deep Learning ◽  
Transfer Learning ◽  
Learning Approach ◽  
Learning Models ◽  
Conidial Fungi

scholarly journals Deep Learning Models for Classification of Red Blood Cells in Microscopy Images to Aid in Sickle Cell Anemia Diagnosis

Electronics ◽  
2020 ◽  
Vol 9 (3) ◽  
pp. 427 ◽  
Author(s):  
Laith Alzubaidi ◽  
Mohammed A. Fadhel ◽  
Omran Al-Shamma ◽  
Jinglan Zhang ◽  
Ye Duan
Keyword(s):  
Deep Learning ◽  
Red Blood Cells ◽  
Transfer Learning ◽  
Sickle Cell ◽  
Sickle Cell Anemia ◽  
Blood Cells ◽  
Learning Models ◽  
Sickle Cells ◽  
Microscopy Images

Sickle cell anemia, which is also called sickle cell disease (SCD), is a hematological disorder that causes occlusion in blood vessels, leading to hurtful episodes and even death. The key function of red blood cells (erythrocytes) is to supply all the parts of the human body with oxygen. Red blood cells (RBCs) form a crescent or sickle shape when sickle cell anemia affects them. This abnormal shape makes it difficult for sickle cells to move through the bloodstream, hence decreasing the oxygen flow. The precise classification of RBCs is the first step toward accurate diagnosis, which aids in evaluating the danger level of sickle cell anemia. The manual classification methods of erythrocytes require immense time, and it is possible that errors may be made throughout the classification stage. Traditional computer-aided techniques, which have been employed for erythrocyte classification, are based on handcrafted features techniques, and their performance relies on the selected features. They also are very sensitive to different sizes, colors, and complex shapes. However, microscopy images of erythrocytes are very complex in shape with different sizes. To this end, this research proposes lightweight deep learning models that classify the erythrocytes into three classes: circular (normal), elongated (sickle cells), and other blood content. These models are different in the number of layers and learnable filters. The available datasets of red blood cells with sickle cell disease are very small for training deep learning models. Therefore, addressing the lack of training data is the main aim of this paper. To tackle this issue and optimize the performance, the transfer learning technique is utilized. Transfer learning does not significantly affect performance on medical image tasks when the source domain is completely different from the target domain. In some cases, it can degrade the performance. Hence, we have applied the same domain transfer learning, unlike other methods that used the ImageNet dataset for transfer learning. To minimize the overfitting effect, we have utilized several data augmentation techniques. Our model obtained state-of-the-art performance and outperformed the latest methods by achieving an accuracy of 99.54% with our model and 99.98% with our model plus a multiclass SVM classifier on the erythrocytesIDB dataset and 98.87% on the collected dataset.

scholarly journals Quantifying Seagrass Distribution in Coastal Water with Deep Learning Models

2020 ◽  
Vol 12 (10) ◽  
pp. 1581 ◽  
Author(s):  
Daniel Perez ◽  
Kazi Islam ◽  
Victoria Hill ◽  
Richard Zimmerman ◽  
Blake Schaeffer ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Transfer Learning ◽  
Satellite Images ◽  
Support Vector ◽  
Learning Approach ◽  
Learning Models ◽  
Learning Techniques ◽  
The World ◽  
New Locations

Coastal ecosystems are critically affected by seagrass, both economically and ecologically. However, reliable seagrass distribution information is lacking in nearly all parts of the world because of the excessive costs associated with its assessment. In this paper, we develop two deep learning models for automatic seagrass distribution quantification based on 8-band satellite imagery. Specifically, we implemented a deep capsule network (DCN) and a deep convolutional neural network (CNN) to assess seagrass distribution through regression. The DCN model first determines whether seagrass is presented in the image through classification. Second, if seagrass is presented in the image, it quantifies the seagrass through regression. During training, the regression and classification modules are jointly optimized to achieve end-to-end learning. The CNN model is strictly trained for regression in seagrass and non-seagrass patches. In addition, we propose a transfer learning approach to transfer knowledge in the trained deep models at one location to perform seagrass quantification at a different location. We evaluate the proposed methods in three WorldView-2 satellite images taken from the coastal area in Florida. Experimental results show that the proposed deep DCN and CNN models performed similarly and achieved much better results than a linear regression model and a support vector machine. We also demonstrate that using transfer learning techniques for the quantification of seagrass significantly improved the results as compared to directly applying the deep models to new locations.

Deep learning based affective computing

2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Saurabh Kumar
Keyword(s):  
Decision Making ◽  
Deep Learning ◽  
Transfer Learning ◽  
Affective Computing ◽  
Machine Learning Algorithms ◽  
Human Beings ◽  
Learning Models ◽  
Text And Image ◽  
Content Type

PurposeDecision-making in human beings is affected by emotions and sentiments. The affective computing takes this into account, intending to tailor decision support to the emotional states of people. However, the representation and classification of emotions is a very challenging task. The study used customized methods of deep learning models to aid in the accurate classification of emotions and sentiments.Design/methodology/approachThe present study presents affective computing model using both text and image data. The text-based affective computing was conducted on four standard datasets using three deep learning customized models, namely LSTM, GRU and CNN. The study used four variants of deep learning including the LSTM model, LSTM model with GloVe embeddings, Bi-directional LSTM model and LSTM model with attention layer.FindingsThe result suggests that the proposed method outperforms the earlier methods. For image-based affective computing, the data was extracted from Instagram, and Facial emotion recognition was carried out using three deep learning models, namely CNN, transfer learning with VGG-19 model and transfer learning with ResNet-18 model. The results suggest that the proposed methods for both text and image can be used for affective computing and aid in decision-making.Originality/valueThe study used deep learning for affective computing. Earlier studies have used machine learning algorithms for affective computing. However, the present study uses deep learning for affective computing.

scholarly journals Novel Transfer Learning Approach for Medical Imaging with Limited Labeled Data

Cancers ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 1590
Author(s):  
Laith Alzubaidi ◽  
Muthana Al-Amidie ◽  
Ahmed Al-Asadi ◽  
Amjad J. Humaidi ◽  
Omran Al-Shamma ◽  
...  
Keyword(s):  
Deep Learning ◽  
Medical Imaging ◽  
Transfer Learning ◽  
Medical Image ◽  
Medical Images ◽  
Image Data ◽  
Learning Approach ◽  
Learning Models ◽  
Annotation Process ◽  
Deep Learning Model

Deep learning requires a large amount of data to perform well. However, the field of medical image analysis suffers from a lack of sufficient data for training deep learning models. Moreover, medical images require manual labeling, usually provided by human annotators coming from various backgrounds. More importantly, the annotation process is time-consuming, expensive, and prone to errors. Transfer learning was introduced to reduce the need for the annotation process by transferring the deep learning models with knowledge from a previous task and then by fine-tuning them on a relatively small dataset of the current task. Most of the methods of medical image classification employ transfer learning from pretrained models, e.g., ImageNet, which has been proven to be ineffective. This is due to the mismatch in learned features between the natural image, e.g., ImageNet, and medical images. Additionally, it results in the utilization of deeply elaborated models. In this paper, we propose a novel transfer learning approach to overcome the previous drawbacks by means of training the deep learning model on large unlabeled medical image datasets and by next transferring the knowledge to train the deep learning model on the small amount of labeled medical images. Additionally, we propose a new deep convolutional neural network (DCNN) model that combines recent advancements in the field. We conducted several experiments on two challenging medical imaging scenarios dealing with skin and breast cancer classification tasks. According to the reported results, it has been empirically proven that the proposed approach can significantly improve the performance of both classification scenarios. In terms of skin cancer, the proposed model achieved an F1-score value of 89.09% when trained from scratch and 98.53% with the proposed approach. Secondly, it achieved an accuracy value of 85.29% and 97.51%, respectively, when trained from scratch and using the proposed approach in the case of the breast cancer scenario. Finally, we concluded that our method can possibly be applied to many medical imaging problems in which a substantial amount of unlabeled image data is available and the labeled image data is limited. Moreover, it can be utilized to improve the performance of medical imaging tasks in the same domain. To do so, we used the pretrained skin cancer model to train on feet skin to classify them into two classes—either normal or abnormal (diabetic foot ulcer (DFU)). It achieved an F1-score value of 86.0% when trained from scratch, 96.25% using transfer learning, and 99.25% using double-transfer learning.

A Study on the Auxiliary Diagnosis of Thyroid Disease Images Based on Multiple Dimensional Deep Learning Algorithms

2020 ◽  
Vol 16 (3) ◽  
pp. 199-205
Author(s):  
Yuejun Liu ◽  
Yifei Xu ◽  
Xiangzheng Meng ◽  
Xuguang Wang ◽  
Tianxu Bai
Keyword(s):  
Deep Learning ◽  
Learning Algorithms ◽  
Region Of Interest ◽  
Classification Performance ◽  
Thyroid Diseases ◽  
Great Success ◽  
Learning Models ◽  
Good Classification Performance ◽  
Spect Images

Background: Medical imaging plays an important role in the diagnosis of thyroid diseases. In the field of machine learning, multiple dimensional deep learning algorithms are widely used in image classification and recognition, and have achieved great success. Objective: The method based on multiple dimensional deep learning is employed for the auxiliary diagnosis of thyroid diseases based on SPECT images. The performances of different deep learning models are evaluated and compared. Methods: Thyroid SPECT images are collected with three types, they are hyperthyroidism, normal and hypothyroidism. In the pre-processing, the region of interest of thyroid is segmented and the amount of data sample is expanded. Four CNN models, including CNN, Inception, VGG16 and RNN, are used to evaluate deep learning methods. Results: Deep learning based methods have good classification performance, the accuracy is 92.9%-96.2%, AUC is 97.8%-99.6%. VGG16 model has the best performance, the accuracy is 96.2% and AUC is 99.6%. Especially, the VGG16 model with a changing learning rate works best. Conclusion: The standard CNN, Inception, VGG16, and RNN four deep learning models are efficient for the classification of thyroid diseases with SPECT images. The accuracy of the assisted diagnostic method based on deep learning is higher than that of other methods reported in the literature.

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