MAPK‐like protein 1 positively regulates maize seedling drought sensitivity by suppressing ABA biosynthesis

2020 ◽  
Vol 102 (4) ◽  
pp. 747-760 ◽  
Author(s):  
Dan Zhu ◽  
Ying Chang ◽  
Ting Pei ◽  
Xiuyan Zhang ◽  
Lan Liu ◽  
...  
Keyword(s):  
Maize Seedling ◽  
Drought Sensitivity ◽  
Aba Biosynthesis

Bioinformatics Analysis Reveals Functions of MicroRNAs in Rice Under the Drought Stress

2021 ◽  
Vol 15 (8) ◽  
pp. 927-936 ◽  
Author(s):  
Yan Peng ◽  
Yuewu Liu ◽  
Xinbo Chen
Keyword(s):  
Drought Stress ◽  
Target Genes ◽  
Hot Spot ◽  
Interaction Network ◽  
Enrichment Analysis ◽  
Differentially Expressed ◽  
Protein Protein Interaction ◽  
Promising Tool ◽  
Differentially Expressed Mirnas ◽  
Aba Biosynthesis

Background: Drought is one of the most damaging and widespread abiotic stresses that can severely limit the rice production. MicroRNAs (miRNAs) act as a promising tool for improving the drought tolerance of rice and have become a hot spot in recent years. Objective: In order to further extend the understanding of miRNAs, the functions of miRNAs in rice under drought stress are analyzed by bioinformatics. Method: In this study, we integrated miRNAs and genes transcriptome data of rice under the drought stress. Some bioinformatics methods were used to reveal the functions of miRNAs in rice under drought stress. These methods included target genes identification, differentially expressed miRNAs screening, enrichment analysis of DEGs, network constructions for miRNA-target and target-target proteins interaction. Results: (1) A total of 229 miRNAs with differential expression in rice under the drought stress, corresponding to 73 rice miRNAs families, were identified. (2) 1035 differentially expressed genes (DEGs) were identified, which included 357 up-regulated genes, 542 down-regulated genes and 136 up/down-regulated genes. (3) The network of regulatory relationships between 73 rice miRNAs families and 1035 DEGs was constructed. (4) 25 UP_KEYWORDS terms of DEGs, 125 GO terms and 7 pathways were obtained. (5) The protein-protein interaction network of 1035 DEGs was constructed. Conclusion: (1) MiRNA-regulated targets in rice might mainly involve in a series of basic biological processes and pathways under drought conditions. (2) MiRNAs in rice might play critical roles in Lignin degradation and ABA biosynthesis. (3) MiRNAs in rice might play an important role in drought signal perceiving and transduction.

scholarly journals Transcriptome Reveals Roles of Lignin-Modifying Enzymes and Abscisic Acid in the Symbiosis of Mycena and Gastrodia elata

2021 ◽  
Vol 22 (12) ◽  
pp. 6557
Author(s):  
Li-Ying Ren ◽  
Heng Zhao ◽  
Xiao-Ling Liu ◽  
Tong-Kai Zong ◽  
Min Qiao ◽  
...  
Keyword(s):  
Biological Activity ◽  
Abscisic Acid ◽  
Lignin Degradation ◽  
Molecular Mechanisms ◽  
Receptor Protein ◽  
Gastrodia Elata ◽  
Upregulated Genes ◽  
Aba Biosynthesis ◽  
Seed Coats

Gastrodia elata is a well-known medicinal and heterotrophic orchid. Its germination, limited by the impermeability of seed coat lignin and inhibition by abscisic acid (ABA), is triggered by symbiosis with fungi such as Mycena spp. However, the molecular mechanisms of lignin degradation by Mycena and ABA biosynthesis and signaling in G. elata remain unclear. In order to gain insights into these two processes, this study analyzed the transcriptomes of these organisms during their dynamic symbiosis. Among the 25 lignin-modifying enzyme genes in Mycena, two ligninolytic class II peroxidases and two laccases were significantly upregulated, most likely enabling Mycena hyphae to break through the lignin seed coats of G. elata. Genes related to reduced virulence and loss of pathogenicity in Mycena accounted for more than half of annotated genes, presumably contributing to symbiosis. After coculture, upregulated genes outnumbered downregulated genes in G. elata seeds, suggesting slightly increased biological activity, while Mycena hyphae had fewer upregulated than downregulated genes, indicating decreased biological activity. ABA biosynthesis in G. elata was reduced by the downregulated expression of 9-cis-epoxycarotenoid dioxygenase (NCED-2), and ABA signaling was blocked by the downregulated expression of a receptor protein (PYL12-like). This is the first report to describe the role of NCED-2 and PYL12-like in breaking G. elata seed dormancy by reducing the synthesis and blocking the signaling of the germination inhibitor ABA. This study provides a theoretical basis for screening germination fungi to identify effective symbionts and for reducing ABA inhibition of G. elata seed germination.

scholarly journals Molecular dissection of maize seedling salt tolerance using a genome‐wide association analysis method

2021 ◽  
Author(s):  
Meijie Luo ◽  
Yunxia Zhang ◽  
Jingna Li ◽  
Panpan Zhang ◽  
Kuan Chen ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Association Analysis ◽  
Maize Seedling ◽  
Genome Wide Association ◽  
Molecular Dissection ◽  
Analysis Method ◽  
Genome Wide Association Analysis ◽  
Genome Wide ◽  
A Genome

Comparative drought sensitivity of co‐occurring white spruce and paper birch in interior Alaska

2021 ◽  
Author(s):  
Patrick F. Sullivan ◽  
Annalis H. Brownlee ◽  
Sarah B.Z. Ellison ◽  
Sean M.P. Cahoon
Keyword(s):  
White Spruce ◽  
Drought Sensitivity ◽  
Interior Alaska ◽  
Paper Birch

scholarly journals Norway Spruce Seedlings from an Eastern Baltic Provenance Show Tolerance to Simulated Drought

Forests ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 82
Author(s):  
Roberts Matisons ◽  
Oskars Krišāns ◽  
Āris Jansons ◽  
Toms Kondratovičs ◽  
Didzis Elferts ◽  
...  
Keyword(s):  
Water Deficit ◽  
Norway Spruce ◽  
Soil Type ◽  
Photochemical Reactions ◽  
Commercial Application ◽  
Important Species ◽  
Fluorescence Parameters ◽  
Drought Sensitivity ◽  
Irrigation Intensity ◽  
Eastern Baltic

In Northern Europe, an increase in heterogeneity of summer precipitation regime will subject forests to water deficit and drought. This is particularly topical for Norway spruce (Picea abies Karst.), which is a drought sensitive, yet economically important species. Nevertheless, local populations still might be highly plastic and tolerant, supporting their commercial application. Accordingly, the tolerance of Norway spruce seedlings from an Eastern Baltic provenance (western part of Latvia) to artificial drought according to soil type was assessed in a shelter experiment. To simulate drought, seedlings were subjected to reduced amounts (0%, 25%, 50%, 75%, and 100%) of naturally occurring precipitation (irrigation intensity). Three soil types (oligotrophic mineral, mesotrophic mineral, and peat) were tested. Seedling height, chlorophyll a concentration, and fluorescence parameters were measured. Both growth and photochemical reactions were affected by the irrigation intensity, the effect of which experienced an interacted with soil type, implying complex controls of drought sensitivity. Seedlings were more sensitive to irrigation intensity on mesotrophic mineral soil, as suggested by growth and photosynthetic activity. However, the responses were nonlinear, as the highest performance (growth and fluorescence parameters) of seedlings occurred in response to intermediate drought. On peat soil, which had the highest water-bearing capacity, an inverse response to irrigation intensity was observed. In general, fluorescence parameters were more sensitive and showed more immediate reaction to soil water deficit than concentration of chlorophyll on mesotrophic mineral and peat soils, while the latter was a better indicator of seedling performance on oligotrophic soil. This indicated considerable plastic acclimation and hence tolerance of seedlings from the local Norway spruce population to drought, though drought sensitivity is age-dependent.

Seed dormancy in four Tibetan Plateau Vicia species and characterization of physiological changes in response of seeds to environmental factors

2013 ◽  
Vol 23 (2) ◽  
pp. 133-140 ◽  
Author(s):  
Xiaowen Hu ◽  
Tingshan Li ◽  
Juan Wang ◽  
Yanrong Wang ◽  
Carol C. Baskin ◽  
...  
Keyword(s):  
Tibetan Plateau ◽  
Seed Dormancy ◽  
Germination Rate ◽  
Soil Surface ◽  
The Tibetan Plateau ◽  
Physical Dormancy ◽  
High Germination ◽  
One Year ◽  
Hydrotime Model ◽  
Aba Biosynthesis

AbstractAlthough seed dormancy of temperate legumes is well understood, less is known about it in species that grow in subalpine/alpine areas. This study investigated dormancy and germination of four Vicia species from the Tibetan Plateau. Fresh seeds of V. sativa were permeable to water, whereas those of V. angustifolia, V. amoena and V. unijuga had physical dormancy (PY). One year of dry storage increased the proportion of impermeable seeds in V. angustifolia, but showed no effect on seed coat permeability in V. amoena or V. unijuga. Seeds of all four species also had non-deep physiological dormancy (PD), which was especially apparent in the two annuals at a high germination temperature (20°C). After 1 year of storage, PD had been lost. The hydrotime model showed that fresh seeds obtained a significantly higher median water potential [Ψb(50)] than stored seeds, implying that PD prevents germination in winter for seeds dispersed without PY when water availability is limited. After 6 months on the soil surface in the field, a high proportion of permeable seeds remained ungerminated, further suggesting that PD plays a key role in preventing germination after dispersal. Addition of fluridone, an inhibitor of abscisic acid (ABA) biosynthesis, evened-out the differences in germination between fresh and stored seeds, which points to the key role of ABA biosynthesis in maintaining dormancy. Further, fresh seeds were more sensitive to exogenous ABA than stored seeds, indicating that storage decreased embryo sensitivity to ABA. On the other hand, the gibberellic acid GA3 increased germination rate, which implies that embryo sensitivity to GA is also involved in seed dormancy regulation. This study showed that PY, PD or their combination (PY+PD) plays a key role in timing germination after dispersal, and that different intensities of dormancy occur among these four Vicia species from the Tibetan Plateau.

Changes in the drought sensitivity of US maize yields

Nature Food ◽  
2020 ◽  
Vol 1 (11) ◽  
pp. 729-735 ◽  
Author(s):  
David B. Lobell ◽  
Jillian M. Deines ◽  
Stefania Di Tommaso
Keyword(s):  
Drought Sensitivity ◽  
Maize Yields

scholarly journals Characterization of the Role of para-Aminobenzoic Acid Biosynthesis in Folate Production by Lactococcus lactis

2007 ◽  
Vol 73 (8) ◽  
pp. 2673-2681 ◽  
Author(s):  
Arno Wegkamp ◽  
Wietske van Oorschot ◽  
Willem M. de Vos ◽  
Eddy J. Smid
Keyword(s):  
Gene Cluster ◽  
Lactococcus Lactis ◽  
Gene Clusters ◽  
Defined Medium ◽  
Biosynthesis Pathway ◽  
Chemically Defined Medium ◽  
Aminobenzoic Acid ◽  
Biosynthesis Gene Cluster ◽  
Gene Coding ◽  
Aba Biosynthesis

ABSTRACT The pab genes for para-aminobenzoic acid (pABA) biosynthesis in Lactococcus lactis were identified and characterized. In L. lactis NZ9000, only two of the three genes needed for pABA production were initially found. No gene coding for 4-amino-4-deoxychorismate lyase (pabC) was initially annotated, but detailed analysis revealed that pabC was fused with the 3′ end of the gene coding for chorismate synthetase component II (pabB). Therefore, we hypothesize that all three enzyme activities needed for pABA production are present in L. lactis, allowing for the production of pABA. Indeed, the overexpression of the pABA gene cluster in L. lactis resulted in elevated pABA pools, demonstrating that the genes are involved in the biosynthesis of pABA. Moreover, a pABA knockout (KO) strain lacking pabA and pabB C was constructed and shown to be unable to produce folate when cultivated in the absence of pABA. This KO strain was unable to grow in chemically defined medium lacking glycine, serine, nucleobases/nucleosides, and pABA. The addition of the purine guanine, adenine, xanthine, or inosine restored growth but not the production of folate. This suggests that, in the presence of purines, folate is not essential for the growth of L. lactis. It also shows that folate is not strictly required for the pyrimidine biosynthesis pathway. L. lactis strain NZ7024, overexpressing both the folate and pABA gene clusters, was found to produce 2.7 mg of folate/liter per optical density unit at 600 nm when the strain was grown on chemically defined medium without pABA. This is in sharp contrast to L. lactis strains overexpressing only one of the two gene clusters. Therefore, we conclude that elevated folate levels can be obtained only by the overexpression of folate combined with the overexpression of the pABA biosynthesis gene cluster, suggesting the need for a balanced carbon flux through the folate and pABA biosynthesis pathway in the wild-type strain.

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