Detection of Pathogens and Formation of Biofilms Using a Three-Dimensional Biomimetic Biosensing Platform

Author(s):  
Roya Mazrouei ◽  
Minako Sumita ◽  
Mohammad Shavezipur

Internalization of pathogens inside pores and channels of fresh produce and formation of polymeric biofilm around their colonies are important phenomena in food safety due to complications they create for removal and inactivation of pathogens. The practical challenges does not allow for monitoring the pathogen-produce interaction in real time and under different ambient conditions. The present work introduces a biomimetic biosensing platform that simulates the actual produce and can detect the presence, growth and internalization of microorganisms and also potential formation of biofilm. The system consists of layers of capacitive electrodes made of polycrystalline silicon which are designed based on a standard foundry process (PolyMUMPs). The electrodes form multiple impedance-based biosensors and can simulate porous medium of the produce surface. As the cells reside on the surface of the top layer or penetrate inside the system, the capacitance value of each electrode pair changes. Monitoring the capacitance change of each biosensor allows us to determine where the microorganisms are and also whether their population is increasing. To demonstrate the applicability of our proposed biosensing system, a comprehensive FEM simulation is performed using ANSYS® APDL. The simulation results show that each pair of electrodes displays a specific pattern of capacitance change when cells reside on the system’s surface, move inside, grow or produce polymeric biofilm, because the electrostatic properties of cells and biofilm polymers are different from those of the solution. Analyzing the capacitance patterns allows us to determine that cells are at which stage of growth or internalization, and how far they have moved inside the system.

2010 ◽  
Vol 46 (4) ◽  
pp. 396-403
Author(s):  
Bing ZHAO ◽  
Zhiqiang LI ◽  
Xiuquan HAN ◽  
Jinhua LIAO ◽  
Hongliang HOU ◽  
...  

Author(s):  
Ted Janssen ◽  
Gervais Chapuis ◽  
Marc de Boissieu

The law of rational indices to describe crystal faces was one of the most fundamental law of crystallography and is strongly linked to the three-dimensional periodicity of solids. This chapter describes how this fundamental law has to be revised and generalized in order to include the structures of aperiodic crystals. The generalization consists in using for each face a number of integers, with the number corresponding to the rank of the structure, that is, the number of integer indices necessary to characterize each of the diffracted intensities generated by the aperiodic system. A series of examples including incommensurate multiferroics, icosahedral crystals, and decagonal quaiscrystals illustrates this topic. Aperiodicity is also encountered in surfaces where the same generalization can be applied. The chapter discusses aperiodic crystal morphology, including icosahedral quasicrystal morphology, decagonal quasicrystal morphology, and aperiodic crystal surfaces; magnetic quasiperiodic systems; aperiodic photonic crystals; mesoscopic quasicrystals, and the mineral calaverite.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kiyoshi Masuyama ◽  
Tomoaki Higo ◽  
Jong-Kook Lee ◽  
Ryohei Matsuura ◽  
Ian Jones ◽  
...  

AbstractIn contrast to hypertrophic cardiomyopathy, there has been reported no specific pattern of cardiomyocyte array in dilated cardiomyopathy (DCM), partially because lack of alignment assessment in a three-dimensional (3D) manner. Here we have established a novel method to evaluate cardiomyocyte alignment in 3D using intravital heart imaging and demonstrated homogeneous alignment in DCM mice. Whilst cardiomyocytes of control mice changed their alignment by every layer in 3D and position twistedly even in a single layer, termed myocyte twist, cardiomyocytes of DCM mice aligned homogeneously both in two-dimensional (2D) and in 3D and lost myocyte twist. Manipulation of cultured cardiomyocyte toward homogeneously aligned increased their contractility, suggesting that homogeneous alignment in DCM mice is due to a sort of alignment remodelling as a way to compensate cardiac dysfunction. Our findings provide the first intravital evidence of cardiomyocyte alignment and will bring new insights into understanding the mechanism of heart failure.


Polymers ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1223
Author(s):  
Max Tönsmann ◽  
Philip Scharfer ◽  
Wilhelm Schabel

Convective Marangoni instabilities in drying polymer films may induce surface deformations, which persist in the dry film, deteriorating product performance. While theoretic stability analyses are abundantly available, experimental data are scarce. We report transient three-dimensional flow field measurements in thin poly(vinyl acetate)-methanol films, drying under ambient conditions with several films exhibiting short-scale Marangoni convection cells. An initial assessment of the upper limit of thermal and solutal Marangoni numbers reveals that the solutal effect is likely to be the dominant cause for the observed instabilities.


2013 ◽  
Vol 694-697 ◽  
pp. 3020-3024
Author(s):  
Hong Bing Wang ◽  
Zhi Rong Li ◽  
Chun Hua Sun

The dynamic performance of the piezoelectric vibrator used in ultrasonic EDM machine in natural frequencies has a great effect on machining precision. Firstly, Through theoretical analysis the dynamic characteristics of the piezoelectric vibrator is obtained. Then the three-dimensional model of the piezoelectric vibrator is constructed by using PRO/E software, and model analysis is carried by using FEM software. Through theoretical analysis and FEM simulation, the appropriate working frequency and mode of the piezoelectric vibrator was found, and the piezoelectric vibrator was fabricated. Experimented results show that the model analysis of frequency is accord with that of FEM.


2006 ◽  
Vol 532-533 ◽  
pp. 568-571
Author(s):  
Ming Zhou ◽  
Hai Feng Yang ◽  
Li Peng Liu ◽  
Lan Cai

The photo-polymerization induced by Two-Photon Absorption (TPA) is tightly confined in the focus because the efficiency of TPA is proportional to the square of intensity. Three-dimensional (3D) micro-fabrication can be achieved by controlling the movement of the focus. Based on this theory, a system for 3D-micro-fabrication with femtosecond laser is proposed. The system consists of a laser system, a microscope system, a real-time detection system and a 3D-movement system, etc. The precision of micro-machining reaches a level down to 700nm linewidth. The line width was inversely proportional to the fabrication speed, but proportional to laser power and NA. The experiment results were simulated, beam waist of 0.413μm and TPA cross section of 2×10-54cm4s was obtained. While we tried to optimize parameters, we also did some research about its applications. With TPA photo-polymerization by means of our experimental system, 3D photonic crystal of wood-pile structure twelve layers and photonic crystal fiber are manufactured. These results proved that the micro-fabrication system of TPA can not only obtain the resolution down to sub-micron level, but also realize real 3D micro-fabrication.


2011 ◽  
Vol 381 ◽  
pp. 72-75
Author(s):  
Bin Li

This paper investigates the interfacial slip between the forming tool and workpiece in a relatively new metal forming process, cross-wedge rolling. Based on the finite elements method, three-dimensional mechanical model of cross wedge rolling process has been developed. Examples of numerical simulation for strain, stress distributions and rolling load components have been included. The main advantages of the finite element method are: the capability of obtaining detailed solutions of the mechanics in a deforming body, namely, stresses, shapes, strains or contact pressure distributions; and the computer codes, can be used for a large variety of problems by simply changing the input data.


2007 ◽  
Vol 7 (3) ◽  
pp. 8309-8332 ◽  
Author(s):  
T. Niu ◽  
S. L. Gong ◽  
G. F. Zhu ◽  
H. L. Liu ◽  
X. Q. Hu ◽  
...  

Abstract. A data assimilation system (DAS) was developed for the Chinese Unified Atmospheric Chemistry Environment – Dust (CUACE/Dust) forecast system and applied in the operational forecasts of sand and dust storm (SDS) in spring 2006. The system is based on a three dimensional variational method (3D-Var) and uses extensively the measurements of surface visibility and dust loading retrieval from the Chinese geostationary satellite FY-2C. The results show that a major improvement to the capability of CUACE/Dust in forecasting the short-term variability in the spatial distribution and intensity of dust concentrations has been achieved, especially in those areas far from the source regions. The seasonal mean Threat Score (TS) over the East Asia in spring 2006 increased from 0.22 to 0.31 by using the data assimilation system, a 41% enhancement. The assimilation results usually agree with the dust loading retrieved from FY-2C and visibility distribution from surface meteorological stations, which indicates that the 3D-Var method is very powerful for the unification of observation and numerical modeling results.


2010 ◽  
Vol 159 ◽  
pp. 697-702
Author(s):  
Ying Zhou ◽  
Ya Xi Tan

A three-dimensional coupled fluid-thermal finite element simulation model has been developed to provide analyzing distribution of velocity and temperature of nine-spacer nozzle by using FEM simulation of FLOTRAN module in ANSYS 6.0. To explore fluid-thermal analysis of the flow fields of nine-spacer nozzle of aluminum roll-casting, stricter analysis of postprocessing result was conducted by MATLAB. It was concluded that flow field of nine-spacer nozzle was able to match cooling capacity of cast rollers, but nine-spacer nozzle’s geometric flaw didn’t suit for working in the case of speed increasing of the drawing-sheet and thickness reducing of the aluminium sheet during roll casting.


Neurosurgery ◽  
1991 ◽  
Vol 29 (1) ◽  
pp. 27-33 ◽  
Author(s):  
James M. Drake ◽  
Michael Joy ◽  
Andrew Goldenberg ◽  
David Kreindler

Abstract Six children ranging in age from 2 to 10 years who harbored deep benign astrocytomas were operated upon using a computer- and robot-assisted system. A radical excision was achieved in all cases with no significant morbidity nor any mortality. The system consists of an interactive, three-dimensional display of computed tomographic image contours and digitized cerebral angiograms taken using the Brown-Roberts-Wells stereotactic frame. The surgical retractor is held and manipulated using a PUMA 200 robot. The position and orientation of the surgical retractor is displayed on the three-dimensional display. Preoperative planning and simulation are important features of this system. Movement of the brain after removal of the tumor and cerebrospinal fluid is substantial, so the tumor removal is based on visually defined margins. Enhanced computer graphics and robotic devices are important adjuncts to neurosurgical procedures and will find increasing use in the future. (Neurosurgery 29:27-31, 1991)


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