scholarly journals Complete Genome Sequences of Four ToxigenicClostridium difficileClinical Isolates from Patients of the Lower Hudson Valley, New York, USA

2018 ◽  
Vol 6 (4) ◽  
Author(s):  
Changhong Yin ◽  
Donald S. Chen ◽  
Jian Zhuge ◽  
Donna McKenna ◽  
Joan Sagurton ◽  
...  
Keyword(s):  
New York ◽  
Clostridium Difficile ◽  
Complete Genome ◽  
Genome Sequences ◽  
Circular Chromosome ◽  
Hudson Valley ◽  
Sequence Types ◽  
Common Sequence

ABSTRACTComplete genome sequences of four toxigenicClostridium difficileisolates from patients in the lower Hudson Valley, New York, USA, were achieved. These isolates represent four common sequence types (ST1, ST2, ST8, and ST42) belonging to two distinct phylogenetic clades. All isolates have a 4.0- to 4.2-Mb circular chromosome, and one carries a phage.

scholarly journals Complete Genome Sequences of Nine Enterovirus D68 Strains from Patients of the Lower Hudson Valley, New York, 2016

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Weihua Huang ◽  
Changhong Yin ◽  
Jian Zhuge ◽  
Taliya Farooq ◽  
Esther C. Yoon ◽  
...  
Keyword(s):  
New York ◽  
Complete Genome ◽  
Genomic Analysis ◽  
The United States ◽  
Comparative Genomic ◽  
Genome Sequences ◽  
Hudson Valley ◽  
Enterovirus D68 ◽  
Nucleotide Divergence ◽  
Generation Sequencing

Complete genome sequences of nine enterovirus D68 (EV-D68) strains from patients in New York were obtained in 2016 by metagenomic next-generation sequencing. Comparative genomic analysis suggests that a new subclade B3, with ~4.5% nucleotide divergence from subclade B1 strains causing the 2014 outbreak, is circulating in the United States in 2016.

scholarly journals Complete Genome Sequences of Three Outbreak-Associated Legionella pneumophila Isolates

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Shatavia S. Morrison ◽  
Heta P. Desai ◽  
Jeffrey W. Mercante ◽  
Pascal Lapierre ◽  
Brian H. Raphael ◽  
...  
Keyword(s):  
New York ◽  
Legionella Pneumophila ◽  
Complete Genome ◽  
Large Study ◽  
Virulence Gene ◽  
Disease Outbreak ◽  
Environmental Isolate ◽  
Genome Sequences ◽  
Legionnaires Disease ◽  
Specific Virulence

We report here the complete genome sequences of three Legionella pneumophila isolates that are associated with a Legionnaires’ disease outbreak in New York in 2012. Two clinical isolates (D7630 and D7632) and one environmental isolate (D7631) were recovered from this outbreak. A single isolate-specific virulence gene was found in D7632. These isolates were included in a large study evaluating the genomic resolution of various bioinformatics approaches for L. pneumophila serogroup 1 isolates.

scholarly journals Complete Genome Sequences and Transmission Electron Micrographs of Listeria Phages of the Genus Homburgvirus

2019 ◽  
Vol 8 (41) ◽  
Author(s):  
Lauren K. Hudson ◽  
Tracey L. Peters ◽  
Yaxiong Song ◽  
Thomas G. Denes
Keyword(s):  
New York ◽  
Listeria Monocytogenes ◽  
Electron Micrographs ◽  
Complete Genome ◽  
Foodborne Pathogen ◽  
Dairy Farms ◽  
Transmission Electron Micrographs ◽  
Genome Sequences ◽  
Content Type ◽  
Transmission Electron

Bacteriophages that infect the foodborne pathogen Listeria monocytogenes were previously isolated from New York dairy farms. The complete genome sequences for three of these Listeria phages, with genome sizes of 64.6 to 65.7 kb, are presented here. Listeria phages LP-010, LP-013, and LP-031-2 are siphoviruses that belong to the genus Homburgvirus.

scholarly journals Complete Genome Sequences of Sequence Type 71 (ST71) and ST97 Staphylococcus aureus Isolates from Bovine Milk

2018 ◽  
Vol 7 (5) ◽  
Author(s):  
Paul Cormican ◽  
Orla M. Keane
Keyword(s):  
Staphylococcus Aureus ◽  
Complete Genome ◽  
Draft Genome ◽  
Bovine Milk ◽  
Bovine Mastitis ◽  
Clinical Mastitis ◽  
Sequence Type ◽  
Genome Sequences ◽  
Content Type ◽  
Sequence Types

This is the announcement of draft genome sequences for Staphylococcus aureus strains belonging to sequence type 97 (ST97) and ST71. These sequence types are commonly associated with bovine mastitis, and the strains were isolated in Ireland in 2010 from the milk of cows with clinical mastitis.

scholarly journals Complete Genome Sequences of Streptococcus pneumoniae Strains HU-OH (Serotype 3, Sequence Type 183 [ST183]), NU83127 (Serotype 4, ST246), and ATCC 49619 (Serotype 19F, ST1203)

2019 ◽  
Vol 8 (9) ◽  
Author(s):  
Kentaro Nagaoka ◽  
Satoshi Konno ◽  
Kazunori Murase ◽  
Taisei Kikuchi ◽  
Yoshitomo Morinaga ◽  
...  
Keyword(s):  
Streptococcus Pneumoniae ◽  
Bacterial Meningitis ◽  
Respiratory Tract ◽  
Complete Genome ◽  
Sequence Type ◽  
Pathogenic Bacterium ◽  
Genome Sequences ◽  
Content Type ◽  
Circular Genome ◽  
Sequence Types

Streptococcus pneumoniae is a pathogenic bacterium frequently found in the respiratory tract of humans and commonly causes pneumonia and bacterial meningitis. Here, the complete circular genome sequences of three S. pneumoniae strains with different serotypes and sequence types have been reported.

scholarly journals Complete Genome Sequences of Four Streptococcus canis Strains Isolated from Dogs in South Korea

2020 ◽  
Vol 9 (33) ◽  
Author(s):  
Jae-Seok Kim ◽  
Shoichi Sakaguchi ◽  
Yasuto Fukushima ◽  
Haruno Yoshida ◽  
Takashi Nakano ◽  
...  
Keyword(s):  
Antimicrobial Resistance ◽  
South Korea ◽  
Resistance Genes ◽  
Complete Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Antimicrobial Resistance Genes ◽  
Streptococcus Canis ◽  
Sequence Types

ABSTRACT This study reports the complete genome sequences of four strains of Streptococcus canis isolated from dogs in South Korea. Their genomes ranged from 2.157 to 2.265 Mbp, with a G+C content of 39.6% to 39.7%. The sequence types, antimicrobial resistance genes, and S. canis M-like protein alleles were characterized.

scholarly journals First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis

2020 ◽  
Vol 12 (10) ◽  
pp. 1782-1788 ◽  
Author(s):  
Ines Friedrich ◽  
Jacqueline Hollensteiner ◽  
Dominik Schneider ◽  
Anja Poehlein ◽  
Robert Hertel ◽  
...  
Keyword(s):  
Complete Genome ◽  
Gc Content ◽  
Bioactive Compound ◽  
Protozoan Parasites ◽  
Genome Sequences ◽  
Circular Chromosome ◽  
Coding Sequences ◽  
Janthinobacterium Lividum ◽  
Peptide Synthetase ◽  
Oligotrophic Water

Abstract We present the first two complete genomes of the Janthinobacterium lividum species, namely strains EIF1 and EIF2, which both possess the ability to synthesize violacein. The violet pigment violacein is a secondary metabolite with antibacterial, antifungal, antiviral, and antitumoral properties. Both strains were isolated from environmental oligotrophic water ponds in Göttingen. The strains were phylogenetically classified by average nucleotide identity (ANI) analysis and showed a species assignment to J. lividum with 97.72% (EIF1) and 97.66% (EIF2) identity. These are the first complete genome sequences of strains belonging to the species J. lividum. The genome of strain EIF1 consists of one circular chromosome (6,373,589 bp) with a GC-content of 61.98%. The genome contains 5,551 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA. The genome of EIF2 comprises one circular chromosome (6,399,352 bp) with a GC-content of 61.63% and a circular plasmid p356839 (356,839 bp) with a GC-content of 57.21%. The chromosome encodes 5,691 coding sequences, 122 rRNAs, 93 tRNAs, and 1 tm-RNA and the plasmid harbors 245 coding sequences. In addition to the highly conserved chromosomally encoded violacein operon, the plasmid comprises a nonribosomal peptide synthetase cluster with similarity to xenoamicin, which is a bioactive compound effective against protozoan parasites.

scholarly journals Four Complete Genome Sequences for Bradyrhizobium sp. Strains Isolated from an Endemic Australian Acacia Legume Reveal Structural Variation

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Ming-Dao Chia ◽  
Anna K. Simonsen
Keyword(s):  
Complete Genome ◽  
Structural Variation ◽  
Root Nodules ◽  
Structural Rearrangement ◽  
Genome Sequences ◽  
Circular Chromosome ◽  
Short Read ◽  
Content Type ◽  
Bradyrhizobium Sp ◽  
Single Circular Chromosome

ABSTRACT Bradyrhizobium sp. strains were isolated from root nodules of the Australian legume, Acacia acuminata (Fabaceae). Here, we report the complete genome sequences of four strains using a hybrid long- and short-read assembly approach. The genome sizes range between ∼7.1 Mbp and ∼8.1 Mbp, each with one single circular chromosome. Whole-genome alignments show extensive structural rearrangement.

scholarly journals Complete Genome Sequences of a Hantavirus Isolate from New York

2018 ◽  
Vol 6 (12) ◽  
pp. e00188-18 ◽  
Author(s):  
L. K. McMullan ◽  
C. G. Albariño ◽  
T. G. Ksiazek ◽  
S. T. Nichol ◽  
C. F. Spiropoulou
Keyword(s):  
United States ◽  
New York ◽  
Complete Genome ◽  
Eastern United States ◽  
Genome Sequences ◽  
Segment Sequence ◽  
Content Type ◽  
L Segment

ABSTRACTWe report here the complete genome sequences for all three segments of the New York hantavirus (New York 1). This is the first reported L segment sequence for hantaviruses maintained inPeromyscusspp. endemic to the eastern United States and Canada.

scholarly journals Genome Sequences of Brevundimonas naejangsanensis Strain FS1091 and Bacillus amyloliquefaciens Strain FS1092, Isolated from a Fresh-Cut-Produce-Processing Plant

2020 ◽  
Vol 9 (4) ◽  
Author(s):  
Ganyu Gu ◽  
Narjol Gonzalez-Escalona ◽  
Jie Zheng ◽  
Samantha Bolten ◽  
Yaguang Luo ◽  
...  
Keyword(s):  
Complete Genome ◽  
Bacillus Amyloliquefaciens ◽  
Processing Plant ◽  
Genome Sequences ◽  
Circular Chromosome ◽  
Content Type ◽  
Processing Facility ◽  
Fresh Cut

The complete genome sequences of Brevundimonas naejangsanensis strain FS1091 and Bacillus amyloliquefaciens strain FS1092, which were isolated from a commercial fresh-cut-produce-processing facility, were determined. Both FS1091 and FS1092 have one circular chromosome of approximately 3.15 and 4.24 Mb, respectively.

Sign in / Sign up

Export Citation Format

Share Document