scholarly journals Organization of the Flagellar Switch Complex ofBacillus subtilis

2018 ◽  
Vol 201 (8) ◽  
Author(s):  
Elizabeth Ward ◽  
Eun A Kim ◽  
Joseph Panushka ◽  
Tayson Botelho ◽  
Trevor Meyer ◽  
...  

ABSTRACTWhile the protein complex responsible for controlling the direction (clockwise [CW] or counterclockwise [CCW]) of flagellar rotation has been fairly well studied inEscherichia coliandSalmonella, less is known about the switch complex inBacillus subtilisor other Gram-positive species. Two component proteins (FliG and FliM) are shared betweenE. coliandB. subtilis, but in place of the protein FliN found inE. coli, theB. subtiliscomplex contains the larger protein FliY. Notably, inB. subtilisthe signaling protein CheY-phosphate induces a switch from CW to CCW rotation, opposite to its action inE. coli. Here, we have examined the architecture and function of the switch complex inB. subtilisusing targeted cross-linking, bacterial two-hybrid protein interaction experiments, and characterization of mutant phenotypes. In major respects, theB. subtilisswitch complex appears to be organized similarly to that inE. coli. The complex is organized around a ring built from the large middle domain of FliM; this ring supports an array of FliG subunits organized in a similar way to that ofE. coli, with the FliG C-terminal domain functioning in the generation of torque via conserved charged residues. Key differences fromE. coliinvolve the middle domain of FliY, which forms an additional, more outboard array, and the C-terminal domains of FliM and FliY, which are organized into both FliY homodimers and FliM heterodimers. Together, the results suggest that the CW and CCW conformational states are similar in the Gram-negative and Gram-positive switches but that CheY-phosphate drives oppositely directed movements in the two cases.IMPORTANCEFlagellar motility plays key roles in the survival of many bacteria and in the harmful action of many pathogens. Bacterial flagella rotate; the direction of flagellar rotation is controlled by a multisubunit protein complex termed the switch complex. This complex has been extensively studied in Gram-negative model species, but little is known about the complex inBacillus subtilisor other Gram-positive species. Notably, the switch complex in Gram-positive species responds to its effector CheY-phosphate (CheY-P) by switching to CCW rotation, whereas inE. coliorSalmonellaCheY-P acts in the opposite way, promoting CW rotation. In the work here, the architecture of theB. subtilisswitch complex has been probed using cross-linking, protein interaction measurements, and mutational approaches. The results cast light on the organization of the complex and provide a framework for understanding the mechanism of flagellar direction control inB. subtilisand other Gram-positive species.

2020 ◽  
Vol 86 (17) ◽  
Author(s):  
Michał Dmowski ◽  
Izabela Kern-Zdanowicz

ABSTRACT Conjugative plasmids are the main players in horizontal gene transfer in Gram-negative bacteria. DNA transfer tools constructed on the basis of such plasmids enable gene manipulation even in strains of clinical or environmental origin, which are often difficult to work with. The conjugation system of the IncM plasmid pCTX-M3 isolated from a clinical strain of Citrobacter freundii has been shown to enable efficient mobilization of oriTpCTX-M3-bearing plasmids into a broad range of hosts comprising Alpha-, Beta-, and Gammaproteobacteria. We constructed a helper plasmid, pMOBS, mediating such mobilization with an efficiency up to 1,000-fold higher than that achieved with native pCTX-M3. We also constructed Escherichia coli donor strains with chromosome-integrated conjugative transfer genes: S14 and S15, devoid of one putative regulator (orf35) of the pCTX-M3 tra genes, and S25 and S26, devoid of two putative regulators (orf35 and orf36) of the pCTX-M3 tra genes. Strains S14 and S15 and strains S25 and S26 are, respectively, up to 100 and 1,000 times more efficient in mobilization than pCTX-M3. Moreover, they also enable plasmid mobilization into the Gram-positive bacteria Bacillus subtilis and Lactococcus lactis. Additionally, the constructed E. coli strains carried no antibiotic resistance genes that are present in pCTX-M3 to facilitate manipulations with antibiotic-resistant recipient strains, such as those of clinical origin. To demonstrate possible application of the constructed tool, an antibacterial conjugation-based system was designed. Strain S26 was used for introduction of a mobilizable plasmid coding for a toxin, resulting in the elimination of over 90% of recipient E. coli cells. IMPORTANCE The conjugation of donor and recipient bacterial cells resulting in conjugative transfer of mobilizable plasmids is the preferred method enabling the introduction of DNA into strains for which other transfer methods are difficult to establish (e.g., clinical strains). We have constructed E. coli strains carrying the conjugation system of the IncM plasmid pCTX-M3 integrated into the chromosome. To increase the mobilization efficiency up to 1,000-fold, two putative regulators of this system, orf35 and orf36, were disabled. The constructed strains broaden the repertoire of tools for the introduction of DNA into the Gram-negative Alpha-, Beta-, and Gammaproteobacteria, as well as into Gram-positive bacteria such as Bacillus subtilis and Lactococcus lactis. The antibacterial procedure based on conjugation with the use of the orf35- and orf36-deficient strain lowered the recipient cell number by over 90% owing to the mobilizable plasmid-encoded toxin.


mBio ◽  
2019 ◽  
Vol 10 (6) ◽  
Author(s):  
John T. Sauls ◽  
Sarah E. Cox ◽  
Quynh Do ◽  
Victoria Castillo ◽  
Zulfar Ghulam-Jelani ◽  
...  

ABSTRACT Bacillus subtilis and Escherichia coli are evolutionarily divergent model organisms whose analysis has enabled elucidation of fundamental differences between Gram-positive and Gram-negative bacteria, respectively. Despite their differences in cell cycle control at the molecular level, the two organisms follow the same phenomenological principle, known as the adder principle, for cell size homeostasis. We thus asked to what extent B. subtilis and E. coli share common physiological principles in coordinating growth and the cell cycle. We measured physiological parameters of B. subtilis under various steady-state growth conditions with and without translation inhibition at both the population and single-cell levels. These experiments revealed core physiological principles shared between B. subtilis and E. coli. Specifically, both organisms maintain an invariant cell size per replication origin at initiation, under all steady-state conditions, and even during nutrient shifts at the single-cell level. Furthermore, the two organisms also inherit the same “hierarchy” of physiological parameters. On the basis of these findings, we suggest that the basic principles of coordination between growth and the cell cycle in bacteria may have been established early in evolutionary history. IMPORTANCE High-throughput, quantitative approaches have enabled the discovery of fundamental principles describing bacterial physiology. These principles provide a foundation for predicting the behavior of biological systems, a widely held aspiration. However, these approaches are often exclusively applied to the best-known model organism, E. coli. In this report, we investigate to what extent quantitative principles discovered in Gram-negative E. coli are applicable to Gram-positive B. subtilis. We found that these two extremely divergent bacterial species employ deeply similar strategies in order to coordinate growth, cell size, and the cell cycle. These similarities mean that the quantitative physiological principles described here can likely provide a beachhead for others who wish to understand additional, less-studied prokaryotes.


2019 ◽  
Vol 201 (8) ◽  
Author(s):  
Michael D. Manson

ABSTRACT The cytoplasmic C ring of the bacterial flagellum is known as the switch complex. It binds the response regulator phospho-CheY to control the direction of flagellar rotation. The C ring of enteric bacteria is well characterized. However, no Gram-positive switch complex had been modeled. Ward et al. (E. Ward, E. A. Kim, J. Panushka, T. Botelho, et al., J Bacteriol 201:e00626-18, 2019, https://doi.org/10.1128/JB.00626-18) propose a structure for the Bacillus subtilis switch complex based on extensive biochemical studies. The work demonstrates that a similar architecture can accommodate different proteins and a reversed signaling logic.


Author(s):  
Amrita Pal ◽  
Xu Min ◽  
Liya E Yu ◽  
Simo O Pehkonen ◽  
Madhumita B. Ray

Indoor air pollution by microbial contaminants is increasingly receiving attention as a public health problem. Under a suitable environment, such as in heating, ventilation and air conditioning (HVAC) system, airborne bacteria are able to proliferate and grow causing various allergies and illnesses. This can be particularly serious in tropical regions due to high relative humidity and warm temperatures all round the year. Application of photocatalysis using UV-A and TiO2 to inactivate air-borne bacteria is relatively new and systematic parametric study is required for the engineering design of a process based on this technology. This study investigates the effects of TiO2 mediated inactivation of various bacterial species in batch and continuous systems using different TiO2 loadings and radiation intensities. Gram-negative bacteria, E. coli and two Gram-positive bacteria, Microbacterium sp. and Bacillus subtilis were used for the inactivation studies. In both systems, inactivation rates of Gram-negative E. coli are higher than the Gram-positive Bacillus subtilis and Microbacterium sp. and the inactivation rates increased in presence of TiO2 for all bacteria. Depending on the type of bacteria, TiO2 loading and light intensity, an increase of 1.3-5.8 times in the inactivation rates was obtained from those in the absence of TiO2. The inactivation rates in the batch and continuous systems were reasonably comparable. Inactivation rates in the continuous system are somewhat higher than those in the batch system due to the unaccounted loss of bacteria via adsorption and settling on the reactor walls in the flow system. The study demonstrates an approach that can be used for the designing of large scale systems for the treatment of bioaerosol.


2017 ◽  
Vol 200 (1) ◽  
Author(s):  
Gairika Ghosh ◽  
Jayavardhana Reddy ◽  
Susmit Sambhare ◽  
Ranjan Sen

ABSTRACTRho is a hexameric molecular motor that functions as a conserved transcription terminator in the majority of bacterial species and is a potential drug target. Psu is a bacteriophage P4 capsid protein that inhibitsEscherichia coliRho by obstructing its ATPase and translocase activities. In this study, we explored the anti-Rho activity of Psu for Rho proteins from different pathogens. Sequence alignment and homology modeling of Rho proteins from pathogenic bacteria revealed the conserved nature of the Psu-interacting regions in all these proteins. We chose Rho proteins from various pathogens, includingMycobacterium smegmatis,Mycobacterium bovis,Mycobacterium tuberculosis,Xanthomonas campestris,Xanthomonas oryzae,Corynebacterium glutamicum,Vibrio cholerae,Salmonella enterica, andPseudomonas syringae. The purified recombinant Rho proteins of these organisms showed variable rates of ATP hydrolysis on poly(rC) as the substrate and were capable of releasing RNA from theE. colitranscription elongation complexes. Psu was capable of inhibiting these two functions of all these Rho proteins.In vivopulldown assays revealed direct binding of Psu with many of these Rho proteins.In vivoexpression ofpsuinduced killing ofM. smegmatis,M. bovis,X. campestris, andE. coliexpressingS. entericaRho indicating Psu-induced inhibition of Rho proteins of these strains under physiological conditions. We propose that the “universal” inhibitory function of the Psu protein against the Rho proteins from both Gram-negative and Gram-positive bacteria could be useful for designing peptides with antimicrobial functions and that these peptides could contribute to synergistic antibiotic treatment of the pathogens by compromising the Rho functions.IMPORTANCEBacteriophage-derived protein factors modulating different bacterial processes could be converted into unique antimicrobial agents. Bacteriophage P4 capsid protein Psu is an inhibitor of theE. colitranscription terminator Rho. Here we show that apart from antagonizingE. coliRho, Psu is able to inhibit Rho proteins from various phylogenetically unrelated Gram-negative and Gram-positive pathogens. Upon binding to these Rho proteins, Psu inhibited them by affecting their ATPase and RNA release functions. The expression of Psuin vivokills various pathogens, such asMycobacteriumandXanthomonasspecies. Hence, Psu could be useful for identifying peptide sequences with anti-Rho activities and might constitute part of synergistic antibiotic treatment against pathogens.


2016 ◽  
Vol 82 (12) ◽  
pp. 3599-3604 ◽  
Author(s):  
S. Correia Carreira ◽  
J. Spencer ◽  
W. Schwarzacher ◽  
A. M. Seddon

ABSTRACTIn order to identify pathogens rapidly and reliably, bacterial capture and concentration from large sample volumes into smaller ones are often required. Magnetic labeling and capture of bacteria using a magnetic field hold great promise for achieving this goal, but the current protocols have poor capture efficiency. Here, we present a rapid and highly efficient approach to magnetic labeling and capture of both Gram-negative (Escherichia coli) and Gram-positive (Staphylococcus aureus) bacteria using cationized magnetoferritin (cat-MF). Magnetic labeling was achieved within a 1-min incubation period with cat-MF, and 99.97% of the labeled bacteria were immobilized in commercially available magnetic cell separation (MACS) columns. Longer incubation times led to more efficient capture, withS. aureusbeing immobilized to a greater extent thanE. coli. Finally, low numbers of magnetically labeledE. colibacteria (<100 CFU per ml) were immobilized with 100% efficiency and concentrated 7-fold within 15 min. Therefore, our study provides a novel protocol for rapid and highly efficient magnetic labeling, capture, and concentration of both Gram-positive and Gram-negative bacteria.IMPORTANCEAntimicrobial resistance (AMR) is a significant global challenge. Rapid identification of pathogens will retard the spread of AMR by enabling targeted treatment with suitable agents and by reducing inappropriate antimicrobial use. Rapid detection methods based on microfluidic devices require that bacteria are concentrated from large volumes into much smaller ones. Concentration of bacteria is also important to detect low numbers of pathogens with confidence. Here, we demonstrate that magnetic separation columns capture small amounts of bacteria with 100% efficiency. Rapid magnetization was achieved by exposing bacteria to cationic magnetic nanoparticles, and magnetized bacteria were concentrated 7-fold inside the column. Thus, bacterial capture and concentration were achieved within 15 min. This approach could be extended to encompass the capture and concentration of specific pathogens, for example, by functionalizing magnetic nanoparticles with antibodies or small molecule probes.


2011 ◽  
Vol 78 (3) ◽  
pp. 651-659 ◽  
Author(s):  
Liuyang Diao ◽  
Qilei Dong ◽  
Zhaohui Xu ◽  
Sheng Yang ◽  
Jiahai Zhou ◽  
...  

ABSTRACTBacillus subtilisand its close relatives are widely used in industry for the Sec-dependent secretory production of proteins. Like other Gram-positive bacteria,B. subtilisdoes not possess SecB, a dedicated targeting chaperone that posttranslationally delivers exported proteins to the SecA component of the translocase. In the present study, we have implemented a functional SecB-dependent protein-targeting pathway intoB. subtilisby coexpressing SecB fromEscherichia colitogether with a SecA hybrid protein in which the carboxyl-terminal 32 amino acids of theB. subtilisSecA were replaced by the corresponding part of SecA fromE. coli.In vitropulldown experiments showed that, in contrast toB. subtilisSecA, the hybrid SecA protein gained the ability to efficiently bind toE. coliSecB, suggesting that the structural details of the extreme C-terminal region of SecA constitute a crucial SecB binding specificity determinant. Using a poorly exported mutant maltose binding protein (MalE11) and alkaline phosphatase (PhoA) as model proteins, we could demonstrate that the secretion of both proteins byB. subtiliswas significantly enhanced in the presence of the artificial protein targeting pathway. Mutations in SecB that do not influence its chaperone activity but prevent its interaction with SecA abolished the secretion stimulation of both proteins, demonstrating that the implemented pathway in fact critically depends on the SecB targeting function. From a biotechnological view, our results open up a new strategy for the improvement of Gram-positive bacterial host systems for the secretory production of heterologous proteins.


2020 ◽  
Vol 49 (1) ◽  
pp. 11-18
Author(s):  
Khaled Mostafa ◽  
Azza El-Sanabary

Purpose This study aims to explore the incorporation of the authors previously prepared chitosan nanoparticles (CNPs) of size around 60-100 nm in the cross-linking formulation of viscose fabrics to see CNPs impact in terms of imparting multi-functional characteristics such as tensile strength, dry wrinkle recovery angles and antibacterial properties. Design/methodology/approach CNPs of size around 60-100 nm were incorporated in cross-linking formulations for viscose fabrics, including different concentrations of glutaraldehyde as a non-formaldehyde cross-linking agent and magnesium chloride hexahydrate as a catalyst. The formulations were applied at different curing times and temperatures in 100 mL distilled water, giving rise to a wet pickup of ca. 85 per cent. The fabrics were dried for 3 min at 85°C and cured at specified temperatures for fixed time intervals in thermo fixing oven according to the traditional pad-dry-cure method. Findings The above eco-friendly method for finished viscose fabrics was found to obtain high dry wrinkle recovery angle and maintain the tensile strength of the finished fabric within the acceptable range, as well as antibacterial properties against Escherichia coli and Staphylococcus aureus as a gram-negative and gram-positive bacteria, respectively. Both, scanning electron microscope and nitrogen percent on the finished fabric confirm the penetration of CNPs inside the fabric structure. Finally, viscose fabrics pageant antibacterial activity against gram-positive and gram-negative bacteria assessed even after 20 washing cycle. Research limitations/implications CNPs with its flourishing effect with respect to cationic nature, biodegradability, reactivity, higher surface area and antimicrobial activity; in addition to glutaraldehyde as non-formaldehyde finishing agent can be used as multi-functional agents for viscose fabrics instead of DMDHEU, polyacrylate and monomeric composites as hazardous materials. Practical implications CNPs as cationic biopolymers were expected to impart multi-functional properties to viscose fabrics especially with obtaining reasonable dry wrinkle recovery angle and tensile strength in addition to antibacterial properties. Originality/value The novelty addressed here is undertaken with a view to impart easy care characteristics and antibacterial activities onto viscose fabrics using CNPs as antimicrobial agent and glutaraldehyde as non-formaldehyde durable press finishes to-replace the traditional formaldehyde-based resins. Besides, to the authors’ knowledge, there is no published work so far using the above cross-linking formulation written above.


2017 ◽  
Vol 61 (7) ◽  
Author(s):  
R. K. Flamm ◽  
D. J. Farrell ◽  
P. R. Rhomberg ◽  
N. E. Scangarella-Oman ◽  
H. S. Sader

ABSTRACT Gepotidacin is a first-in-class, novel triazaacenaphthylene antibiotic that inhibits bacterial DNA replication and has in vitro activity against susceptible and drug-resistant pathogens. Reference in vitro methods were used to investigate the MICs and minimum bactericidal concentrations (MBCs) of gepotidacin and comparator agents for Staphylococcus aureus, Streptococcus pneumoniae, and Escherichia coli. Gepotidacin in vitro activity was also evaluated by using time-kill kinetics and broth microdilution checkerboard methods for synergy testing and for postantibiotic and subinhibitory effects. The MIC90 of gepotidacin for 50 S. aureus (including methicillin-resistant S. aureus [MRSA]) and 50 S. pneumoniae (including penicillin-nonsusceptible) isolates was 0.5 μg/ml, and for E. coli (n = 25 isolates), it was 4 μg/ml. Gepotidacin was bactericidal against S. aureus, S. pneumoniae, and E. coli, with MBC/MIC ratios of ≤4 against 98, 98, and 88% of the isolates tested, respectively. Time-kill curves indicated that the bactericidal activity of gepotidacin was observed at 4× or 10× MIC at 24 h for all of the isolates. S. aureus regrowth was observed in the presence of gepotidacin, and the resulting gepotidacin MICs were 2- to 128-fold higher than the baseline gepotidacin MICs. Checkerboard analysis of gepotidacin combined with other antimicrobials demonstrated no occurrences of antagonism with agents from multiple antimicrobial classes. The most common interaction when testing gepotidacin was indifference (fractional inhibitory concentration index of >0.5 to ≤4; 82.7% for Gram-positive isolates and 82.6% for Gram-negative isolates). The postantibiotic effect (PAE) of gepotidacin was short when it was tested against S. aureus (≤0.6 h against MRSA and MSSA), and the PAE–sub-MIC effect (SME) was extended (>8 h; three isolates at 0.5× MIC). The PAE of levofloxacin was modest (0.0 to 2.4 h), and the PAE-SME observed varied from 1.2 to >9 h at 0.5× MIC. These in vitro data indicate that gepotidacin is a bactericidal agent that exhibits a modest PAE and an extended PAE-SME against Gram-positive and -negative bacteria and merits further study for potential use in treating infections caused by these pathogens.


2021 ◽  
Vol 4 (1) ◽  
pp. 125-128
Author(s):  
Jordan Johnson ◽  
Lovely Anderson ◽  
Jennifer Laifa

Escherichia coli is a Gram-negative bacterium also found in the human. Bacillus subtilis is a Gram-positive, non-pathogenic, endospore-forming bacterium. The spores can survive the heat and B. subtilis to cause food poisoning. The study hypothesized that the extracts from B. pilosa would inhibit the growth of E. coli and B. subtilis. The seeds of B. pilosa were purchased from the seed company. The seeds were dried, ground, and shaken in acetone, ethanol, methanol, and water for 72 hours. Solvents were evaporated and the crude extracts were used for antibacterial activity using a modified Kirby-Bauer disc method. The results revealed that the growth of E. coli was inhibited by the extracts using ethanol. The zones of inhibition were 13 mm. The extracts that were extracted using acetone and water were not effective in inhibiting the growth of E. coli. The growth of B. subtilis was inhibited by the extracts from acetone and methanol. The zones of inhibition were 13 mm. The results revealed that the extracts from ethanol and water were not effective in inhibiting the growth of B. subtilis. Seeds of B. pilosa have the potential to be used as antimicrobials.


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