Detecting landscape-level changes in tree biomass and biodiversity: methodological constraints and challenges of plot-based approaches

2013 ◽  
Vol 43 (9) ◽  
pp. 799-808 ◽  
Author(s):  
Carl F. Salk ◽  
Robin L. Chazdon ◽  
Krister P. Andersson

Understanding how human-impacted landscapes are changing is crucial for effective adaptive management and payment for ecosystem services programs. Landscape-level shifts in land use pose challenges not seen in typical ecological studies of well-protected forests. In human-modified landscapes, forests are often monitored using unique sets of randomized plots at each visit rather than re-censusing in the same permanent plots. We contrast field-based forest change monitoring using these two techniques and investigate whether sampling more plots or bigger plots better detects forest changes. Our empirical analysis employs long-term data sets from old-growth, second-growth, and managed tropical forests. We find that resampling in permanent plots reduces variation among subsequent censuses, but more importantly, it enables more powerful statistical tests. Increasing the number of plots improves detection of forest biomass changes more effectively than enlarging existing plot sizes, cost considerations being equal. This effect arises from more extensive capture of spatial heterogeneity by sampling in a greater number of locations. We further show that typical sampling techniques poorly assess the biodiversity of tropical forests and struggle to identify big changes in populations of common species. We conclude with practical suggestions for forest sampling in human-impacted tropical landscapes, including defining monitoring goals and delineating forests vs. entire landscapes as study areas.

2021 ◽  
pp. e01739
Author(s):  
Sakiko Yano ◽  
Ryota Aoyagi ◽  
Fujiki Shogoro ◽  
John B. Sugau ◽  
Joan T. Pereira ◽  
...  

Author(s):  
Ned Augenblick ◽  
Matthew Rabin

Abstract When a Bayesian learns new information and changes her beliefs, she must on average become concomitantly more certain about the state of the world. Consequently, it is rare for a Bayesian to frequently shift beliefs substantially while remaining relatively uncertain, or, conversely, become very confident with relatively little belief movement. We formalize this intuition by developing specific measures of movement and uncertainty reduction given a Bayesian’s changing beliefs over time, showing that these measures are equal in expectation and creating consequent statistical tests for Bayesianess. We then show connections between these two core concepts and four common psychological biases, suggesting that the test might be particularly good at detecting these biases. We provide support for this conclusion by simulating the performance of our test and other martingale tests. Finally, we apply our test to data sets of individual, algorithmic, and market beliefs.


2016 ◽  
Vol 16 (24) ◽  
pp. 15545-15559 ◽  
Author(s):  
Ernesto Reyes-Villegas ◽  
David C. Green ◽  
Max Priestman ◽  
Francesco Canonaco ◽  
Hugh Coe ◽  
...  

Abstract. The multilinear engine (ME-2) factorization tool is being widely used following the recent development of the Source Finder (SoFi) interface at the Paul Scherrer Institute. However, the success of this tool, when using the a value approach, largely depends on the inputs (i.e. target profiles) applied as well as the experience of the user. A strategy to explore the solution space is proposed, in which the solution that best describes the organic aerosol (OA) sources is determined according to the systematic application of predefined statistical tests. This includes trilinear regression, which proves to be a useful tool for comparing different ME-2 solutions. Aerosol Chemical Speciation Monitor (ACSM) measurements were carried out at the urban background site of North Kensington, London from March to December 2013, where for the first time the behaviour of OA sources and their possible environmental implications were studied using an ACSM. Five OA sources were identified: biomass burning OA (BBOA), hydrocarbon-like OA (HOA), cooking OA (COA), semivolatile oxygenated OA (SVOOA) and low-volatility oxygenated OA (LVOOA). ME-2 analysis of the seasonal data sets (spring, summer and autumn) showed a higher variability in the OA sources that was not detected in the combined March–December data set; this variability was explored with the triangle plots f44 : f43 f44 : f60, in which a high variation of SVOOA relative to LVOOA was observed in the f44 : f43 analysis. Hence, it was possible to conclude that, when performing source apportionment to long-term measurements, important information may be lost and this analysis should be done to short periods of time, such as seasonally. Further analysis on the atmospheric implications of these OA sources was carried out, identifying evidence of the possible contribution of heavy-duty diesel vehicles to air pollution during weekdays compared to those fuelled by petrol.


2021 ◽  
Author(s):  
Luz Karime Atencia ◽  
María Gómez del Campo ◽  
Gema Camacho ◽  
Antonio Hueso ◽  
Ana M. Tarquis

<p>Olive is the main fruit tree in Spain representing 50% of the fruit trees surface, around 2,751,255 ha. Due to its adaptation to arid conditions and the scarcity of water, regulated deficit irrigation (RDI) strategy is normally applied in traditional olive orchards and recently to high density orchards. The application of RDI is one of the most important technique used in the olive hedgerow orchard. An investigation of the detection of water stress in nonhomogeneous olive tree canopies such as orchards using remote sensing imagery is presented.</p><p>In 2018 and 2019 seasons, data on stem water potential were collected to characterize tree water state in a hedgerow olive orchard cv. Arbequina located in Chozas de Canales (Toledo). Close to the measurement’s dates, remote sensing images with spectral and thermal sensors were acquired. Several vegetation indexes (VI) using both or one type of sensors were estimated from the areas selected that correspond to the olive crown avoiding the canopy shadows.</p><p>Nonparametric statistical tests between the VIs and the stem water potential were carried out to reveal the most significant correlation. The results will be discussing in the context of robustness and sensitivity between both data sets at different phenological olive state.</p><p><strong>ACKNOWLODGEMENTS</strong></p><p>Financial support provided by the Spanish Research Agency co-financed with European Union FEDER funds (AEI/FEDER, UE, AGL2016-77282-C3-2R project) and Comunidad de Madrid through calls for grants for the completion of Industrial Doctorates, is greatly appreciated.</p>


2021 ◽  
pp. 90-120
Author(s):  
Charles Auerbach

This chapter covers tests of statistical significance that can be used to compare data across phases. These are used to determine whether observed outcomes are likely the result of an intervention or, more likely, the result of sampling error or chance. The purpose of a statistical test is to determine how likely it is that the analyst is making an incorrect decision by rejecting the null hypothesis, that there is no difference between compared phases, and accepting the alternative one, that true differences exist. A number of tests of significance are presented in this chapter: statistical process control charts (SPCs), proportion/frequency, chi-square, the conservative dual criteria (CDC), robust conservative dual criteria (RCDC), the t test, and analysis of variance (ANOVA). How and when to use each of these are also discussed, and examples are provided to illustrate each. The method for transforming autocorrelated data and merging data sets is discussed further in the context of utilizing transformed data sets to test of Type 1 error.


1990 ◽  
Vol 47 (5) ◽  
pp. 948-959 ◽  
Author(s):  
Laura J. Richards ◽  
Jon T. Schnute ◽  
Claudia M. Hand

In this paper we develop a multivariate analysis of length and age at maturity that includes the univariate maturity model of Schnute and Richards (1990, Can. J. Fish. Aquat. Sci. 47: 24–40) as a special case. In addition, we address the problem of drawing meaningful conclusions from large data sets oriented to fish maturity, and we present statistical tests of such conclusions. We illustrate our approach with comparisons among male and female lingcod (Ophiodon elongatus) from three stocks along the coast of British Columbia, Canada. From the univariate analysis, we demonstrate that male lingcod mature at a smaller size than female lingcod, and that for each sex, size at maturity increases with latitude. From the multivariate analysis, we determine that length and age together provide a better prediction of lingcod maturation than either variate considered alone. The multivariate model is applicable to any situation for which one or more positive variates is asymptotically related to a probability measure in the range (0, 1).


1991 ◽  
Vol 21 (1) ◽  
pp. 132-142 ◽  
Author(s):  
R. A. Houghton

The net annual flux of carbon from south and southeast Asia as a result of changes in the area of forests was calculated for the period 1850 to 1985. The total net flux ranged from 14.4 to 24.0 Pg of carbon, depending on the estimates of biomass used in the calculations. High estimates of biomass, based on direct measurement of a few stands, and low estimates of biomass, based on volumes of merchantable wood surveyed over large areas, differ by a factor of almost 2. These and previous estimates of the release of carbon from terrestrial ecosystems to the atmosphere have been based on changes in the area of forests, or rates of deforestation. Recent studies have shown, however, that the loss of carbon from forests in tropical Asia is greater than would be expected on the basis of deforestation alone. This loss of carbon from within forests (degradation) also releases carbon to the atmosphere when the products removed from the forest burn or decay. Thus, degradation should be included in analyses of the net flux of carbon from terrestrial ecosystems. Degradation may also explain some of the difference between estimates of tropical forest biomass if the higher estimates are based on undisturbed forests and the lower estimates are more representative of the region. The implication of degradation for estimates of the release of carbon from terrestrial ecosystems is explored. When degradation was included in the analyses, the net flux of carbon between 1850 and 1985 was 30.2 Pg of carbon, about 25% above that calculated on the basis of deforestation alone (with high estimates of biomass), and about 110% above that calculated with low estimates of biomass. Thus, lower estimates of biomass for contemporary tropical forests do not necessarily result in lower estimates of flux.


2006 ◽  
Vol 22 (2) ◽  
pp. 223-226 ◽  
Author(s):  
Mary Beth Palomaki ◽  
Robin L. Chazdon ◽  
J. Pablo Arroyo ◽  
Susan G. Letcher

Light is a key environmental factor limiting growth and survival of trees in the subcanopy of wet tropical forests (Davies 2001, Thomas 1996). Light availability varies both vertically and horizontally and affects tree height, crown shape and tree architecture (Bongers & Sterck 1998, Sterck & Bongers 2001, Sterck et al. 1999) in addition to growth and survival (Clark & Clark 1992, 2001). Although many studies of tree seedlings and saplings have shown that growth varies significantly with light availability in tropical wet forests (Clark et al. 1993, Iriarte & Chazdon 2005, King 1991, Kohyama 1991, Montgomery & Chazdon 2002, Oberbauer et al. 1988, 1993; Poorter & Werger 1999, Sterck et al. 1999, Welden et al. 1991), few studies have examined these relationships in size classes above 5 cm dbh (Sterck 1999). King et al. (2005) found that annual increment growth of trees in the 8–20-cm dbh size class in two Asian forests was positively dependent on an index of crown light interception, but no direct measurements of light availability were taken in this study. Due to logistical challenges, few direct measurements of light environments above tree crowns have been made in tropical forests (Sterck & Bongers 2001). To our knowledge, no measurements have been made in second-growth forests.


2020 ◽  
Vol 69 (4) ◽  
pp. 795-812 ◽  
Author(s):  
Xiaodong Jiang ◽  
Scott V Edwards ◽  
Liang Liu

Abstract A statistical framework of model comparison and model validation is essential to resolving the debates over concatenation and coalescent models in phylogenomic data analysis. A set of statistical tests are here applied and developed to evaluate and compare the adequacy of substitution, concatenation, and multispecies coalescent (MSC) models across 47 phylogenomic data sets collected across tree of life. Tests for substitution models and the concatenation assumption of topologically congruent gene trees suggest that a poor fit of substitution models, rejected by 44% of loci, and concatenation models, rejected by 38% of loci, is widespread. Logistic regression shows that the proportions of GC content and informative sites are both negatively correlated with the fit of substitution models across loci. Moreover, a substantial violation of the concatenation assumption of congruent gene trees is consistently observed across six major groups (birds, mammals, fish, insects, reptiles, and others, including other invertebrates). In contrast, among those loci adequately described by a given substitution model, the proportion of loci rejecting the MSC model is 11%, significantly lower than those rejecting the substitution and concatenation models. Although conducted on reduced data sets due to computational constraints, Bayesian model validation and comparison both strongly favor the MSC over concatenation across all data sets; the concatenation assumption of congruent gene trees rarely holds for phylogenomic data sets with more than 10 loci. Thus, for large phylogenomic data sets, model comparisons are expected to consistently and more strongly favor the coalescent model over the concatenation model. We also found that loci rejecting the MSC have little effect on species tree estimation. Our study reveals the value of model validation and comparison in phylogenomic data analysis, as well as the need for further improvements of multilocus models and computational tools for phylogenetic inference. [Bayes factor; Bayesian model validation; coalescent prior; congruent gene trees; independent prior; Metazoa; posterior predictive simulation.]


2004 ◽  
Vol 4 (2) ◽  
pp. 557-562 ◽  
Author(s):  
M. Kulmala ◽  
T. Suni ◽  
K. E. J. Lehtinen ◽  
M. Dal Maso ◽  
M. Boy ◽  
...  

Abstract. The possible connections between the carbon balance of ecosystems and aerosol-cloud-climate interactions play a significant role in climate change studies. Carbon dioxide is a greenhouse gas, whereas the net effect of atmospheric aerosols is to cool the climate. Here, we investigated the connection between forest-atmosphere carbon exchange and aerosol dynamics in the continental boundary layer by means of multiannual data sets of particle formation and growth rates, of CO2 fluxes, and of monoterpene concentrations in a Scots pine forest in southern Finland. We suggest a new, interesting link and a potentially important feedback among forest ecosystem functioning, aerosols, and climate: Considering that globally increasing temperatures and CO2 fertilization are likely to lead to increased photosynthesis and forest growth, an increase in forest biomass would increase emissions of non-methane biogenic volatile organic compounds and thereby enhance organic aerosol production. This feedback mechanism couples the climate effect of CO2 with that of aerosols in a novel way.


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