Intact genetic structure and high levels of genetic diversity in bottlenecked sockeye salmon (Oncorhynchus nerka) populations of the Fraser River, British Columbia, Canada

2000 ◽  
Vol 57 (10) ◽  
pp. 1985-1998 ◽  
Author(s):  
Ruth E Withler ◽  
Khai D Le ◽  
R John Nelson ◽  
Kristina M Miller ◽  
Terry D Beacham
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Genetic Structure ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Allelic Diversity ◽  
Lower Proportion ◽  
Fraser River ◽  
Rare Alleles ◽  
Genetic Bottlenecks

Analysis of six microsatellite loci in 5800 sockeye salmon (Oncorhynchus nerka) from 29 Fraser River populations provided little evidence of genetic bottlenecks or mass straying in upper Fraser sockeye salmon resulting from reduced abundances following 1913-1914 rockslides in the Fraser canyon and successive decades of high exploitation. Upper Fraser populations were not characterized by a paucity of rare alleles, a sensitive indicator of populations in which effective size has been recently reduced. Heterozygosity and allelic diversity did not differ consistently between lower and upper Fraser populations. Throughout the watershed, early-migrating populations had lower allelic diversity and a lower proportion of rare alleles than did late-migrating ones. Genetic differentiation between upper and lower Fraser populations and heterogeneity among lower Fraser populations supported the suggestion that Fraser sockeye salmon are descendants of at least two postglacial "races." Variation among lakes within regions was the strongest component of genetic structure, accounting for five times the variation among populations within lakes and more than two times the variation among regions. Extensive historical transplants of eggs and juveniles apparently resulted in lit tle gene flow among regions, but three populations were reestablished or rebuilt as the result of more recent transplants.

Sockeye salmon (Oncorhynchus nerka) return after an absence of nearly 90 years: a case of reversion to anadromy

2011 ◽  
Vol 68 (9) ◽  
pp. 1590-1602 ◽  
Author(s):  
L. Godbout ◽  
C.C. Wood ◽  
R.E. Withler ◽  
S. Latham ◽  
R.J. Nelson ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Dna Markers ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Downstream Migration ◽  
Hydroelectric Dams ◽  
Low Genetic Diversity ◽  
Genetic Bottlenecks ◽  
Anadromous Form

We document the recent reappearance of anadromous sockeye salmon ( Oncorhynchus nerka ) that were thought to have been extirpated by the construction of hydroelectric dams on the Coquitlam and Alouette rivers in British Columbia, Canada, in 1914 and 1927, respectively. Unexpected downstream migrations of juveniles during experimental water releases into both rivers in 2005 and 2006 preceded upstream return migrations of adults in 2007 and 2008. Genetic (microsatellite and mitochondrial DNA) markers and stable isotope (δ34S and 87Sr/86Sr) patterns in otoliths confirm that both the juvenile downstream migrants and adult upstream migrants were progeny of nonanadromous sockeye salmon (kokanee) that inhabit Coquitlam and Alouette reservoirs. Low genetic diversity and evidence of genetic bottlenecks suggest that the kokanee populations in both reservoirs originated from relatively few anadromous individuals that residualized after downstream migration was largely prevented by the construction of dams. Once given an opportunity for upstream and downstream migration, both populations appear capable of reverting to a successful anadromous form, even after 25 generations.

Biochemical Studies on Sockeye Salmon During Spawning Migration: XI. The Free Histidine Content of the Tissues

1960 ◽  
Vol 17 (3) ◽  
pp. 347-351 ◽  
Author(s):  
J. D. Wood ◽  
D. W. Duncan ◽  
M. Jackson
Keyword(s):  
Amino Acid ◽  
Sockeye Salmon ◽  
Alimentary Tract ◽  
Oncorhynchus Nerka ◽  
The Other ◽  
Spawning Migration ◽  
Fraser River ◽  
Initial Value ◽  
Spawning Grounds ◽  
Biochemical Studies

During the first 250 miles (400 km) of spawning migration of Fraser River sockeye salmon (Oncorhynchus nerka) the free histidine content of the muscle, alimentary tract, and head+skin+bones+tail decreased to a small fraction of the initial value. A further decrease occurred in the levels of this amino acid in the alimentary tract during the subsequent 415-mile (657-km) migration to the spawning grounds, no change being observed with the other tissues. Comparatively small changes in free histidine were found with heart, spleen, liver, kidney and gonads during migration.

A widespread decrease in productivity of sockeye salmon (Oncorhynchus nerka) populations in western North America

2012 ◽  
Vol 69 (8) ◽  
pp. 1255-1260 ◽  
Author(s):  
Randall M. Peterman ◽  
Brigitte Dorner
Keyword(s):  
Sockeye Salmon ◽  
Spatial Scales ◽  
Oncorhynchus Nerka ◽  
Geographic Area ◽  
Fraser River ◽  
Western North America ◽  
Southeast Alaska ◽  
The Past ◽  
Large Geographic Area ◽  
Marine Areas

We used data on 64 stocks of sockeye salmon ( Oncorhynchus nerka ) from British Columbia (B.C.), Washington, and Alaska to determine whether recent decreases in abundance and productivity observed for Fraser River, B.C., sockeye have occurred more widely. We found that decreasing time trends in productivity have occurred across a large geographic area ranging from Washington, B.C., southeast Alaska, and up through the Yakutat peninsula, Alaska, but not in central and western Alaska. Furthermore, a pattern of predominantly shared trends across southern stocks and opposite trends between them and stocks from western Alaska was present in the past (1950–1985), but correlations have intensified since then. The spatial extent of declining productivity of sockeye salmon has important implications for management as well as research into potential causes of the declines. Further research should focus on mechanisms that operate at large, multiregional spatial scales, and (or) in marine areas where numerous correlated sockeye stocks overlap.

scholarly journals Population Genetic Structure and Habitat Connectivity for Jaguar (Panthera onca) Conservation in Central Belize.

2019 ◽  
Author(s):  
Angelica Menchaca ◽  
Natalia Rossi ◽  
Jeremy Froidevaux ◽  
Isabela Dias-freedman ◽  
Anthony Caragiulo ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Genetic Structure ◽  
Genetic Connectivity ◽  
Suitable Habitat ◽  
Fine Scale ◽  
Panthera Onca ◽  
Wildlife Sanctuary ◽  
Landscape Permeability ◽  
Forest Reserve

Abstract Connectivity among jaguar (Panthera onca) populations will ensure natural gene flow and the long-term survival of the species throughout its range. Jaguar conservation efforts have focused primarily on connecting suitable habitat in a broad-scale. Accelerated habitat reduction, human-wildlife conflict, limited funding, and the complexity of jaguar behaviour have proven challenging to maintain connectivity between populations effectively. Here, we used non-invasive genetic sampling and individual-based conservation genetic analyses to assess genetic diversity and levels of genetic connectivity between individuals in the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor. We used expert knowledge and scientific literature to develop models of landscape permeability based on circuit theory with fine-scale landscape features as ecosystem types, distance to human settlements and roads to predict the most probable jaguar movement across central Belize. Results We used 12 highly polymorphic microsatellite loci to identify 50 individual jaguars. We detected high levels of genetic diversity across loci (HE= 0.61, HO= 0.55, and NA=9.33). Using Bayesian clustering and multivariate models to assess gene flow and genetic structure, we identified one single group of jaguars (K = 1). We identified critical areas for jaguar movement that fall outside the boundaries of current protected areas in central Belize. We detected two main areas of high landscape permeability in a stretch of approximately 18 km between Sittee River Forest Reserve and Manatee Forest Reserve that may increase functional connectivity and facilitate jaguar dispersal from and to Cockscomb Basin Wildlife Sanctuary. Our analysis provides important insights on fine-scale genetic and landscape connectivity of jaguars in central Belize, an area of conservation concern. Conclusions The results of our study demonstrate high levels of relatively recent gene flow for jaguars between two study sites in central Belize. Our landscape analysis detected corridors of expected jaguar movement between the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor. We highlight the importance of maintaining already established corridors and consolidating new areas that further promote jaguar movement across suitable habitat beyond the boundaries of currently protected areas. Continued conservation efforts within identified corridors will further maintain and increase genetic connectivity in central Belize.

scholarly journals Targeted Sequencing Suggests Wild-Crop Gene Flow Is Central to Different Genetic Consequences of Two Independent Pumpkin Domestications

2021 ◽  
Vol 9 ◽  
Author(s):  
Heather R. Kates ◽  
Fernando López Anido ◽  
Guillermo Sánchez-de la Vega ◽  
Luis E. Eguiarte ◽  
Pamela S. Soltis ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Gene Flow ◽  
Genetic Structure ◽  
Morphological Diversity ◽  
Cucurbita Maxima ◽  
Wild Progenitor ◽  
Breeding Potential ◽  
Trait Improvement ◽  
Wild Progenitors

Studies of domestication genetics enrich our understanding of how domestication shapes genetic and morphological diversity. We characterized patterns of genetic variation in two independently domesticated pumpkins and their wild progenitors to assess and compare genetic consequences of domestication. To compare genetic diversity pre- and post-domestication and to identify genes targeted by selection during domestication, we analyzed ∼15,000 SNPs of 48 unrelated accessions, including wild, landrace, and improved lines for each of two pumpkin species, Cucurbita argyrosperma and Cucurbita maxima. Genetic diversity relative to its wild progenitor was reduced in only one domesticated subspecies, C. argyrosperma ssp. argyrosperma. The two species have different patterns of genetic structure across domestication status. Only 1.5% of the domestication features identified for both species were shared between species. These findings suggest that ancestral genetic diversity, wild-crop gene flow, and domestication practices shaped the genetic diversity of two similar Cucurbita crops in different ways, adding to our understanding of how genetic diversity changes during the processes of domestication and how trait improvement impacts the breeding potential of modern crops.

Metabolic rates and swimming performance of adult Fraser River sockeye salmon (Oncorhynchus nerka) after a controlled infection with Parvicapsula minibicornis

2005 ◽  
Vol 62 (9) ◽  
pp. 2124-2133 ◽  
Author(s):  
G N Wagner ◽  
S G Hinch ◽  
L J Kuchel ◽  
A Lotto ◽  
S RM Jones ◽  
...  
Keyword(s):  
Sockeye Salmon ◽  
Swimming Performance ◽  
Oncorhynchus Nerka ◽  
Kidney Tissue ◽  
Severe Infection ◽  
Polymerase Chain Reaction Analysis ◽  
Infected Fish ◽  
Fraser River ◽  
Metabolic Rates ◽  
Holding Period

Adult sockeye salmon (Oncorhynchus nerka) acquire infections with the myxosporean kidney parasite Parvicapsula minibicornis during their spawning migration in the Fraser River, British Columbia. Controlled infections with this parasite in wild sockeye salmon had no significant impact on plasma ionic status, metabolic rates, and initial maximum prolonged swimming performance (Ucrit) for fish ranked as either strongly, weakly, or noninfected by polymerase chain reaction analysis of kidney tissue. However, strongly infected fish had significantly lower second Ucrit and recovery ratio (8%) values, indicating decreased ability to recover from exercise. As the present study shows that the severity of infection is affected by time and temperature, the accumulated thermal units (ATU) of exposure in this study were compared with those experienced by naturally migrating sockeye salmon. A parallel telemetry study revealed that early-timed sockeye experienced significantly more ATU (741.4 ± 29.4 °C) than normally migrating salmon (436.0 ± 20.0 °C) prior to spawning because of a significantly longer holding period in the lake system. The present data are discussed in the context of a threshold of >450 °C ATU for severe infection that would first manifest in early-timed fish in the upper reaches of the Fraser River and certainly on the spawning grounds.

Genetic structure of the arboreal squirrels (Glaucomys sabrinus and Tamiasciurus hudsonicus) in the North American Black Hills

2012 ◽  
Vol 90 (9) ◽  
pp. 1191-1200 ◽  
Author(s):  
A.M. Kiesow ◽  
E.M. Monroe ◽  
H.B. Britten
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Management Practices ◽  
Allelic Diversity ◽  
Black Hills ◽  
Tamiasciurus Hudsonicus ◽  
Glaucomys Sabrinus ◽  
Red Squirrel ◽  
Isolated Populations ◽  
Red Squirrels

We selected two isolated mammalian populations, the Black Hills northern flying squirrel ( Glaucomys sabrinus (Shaw, 1801)) and red squirrel ( Tamiasciurus hudsonicus (Erxleben, 1777)), to elucidate their genetic structure. We trapped both squirrels from 2005 to 2007, in three regions of the Black Hills, differing in geology and vegetation, to collect ear samples for genetic analyses. Microsatellite loci (northern flying (9) and red squirrel (13)) were used to examine genetic structure. Data analyses estimated genetic variability, substructure, and gene flow. Northern flying and red squirrel populations have allelic diversity and observed heterozygosity similar to other isolated populations. Each species shows weak substructure from STRUCTURE and GENELAND analyses, suggesting squirrel movements may be inhibited by topography or unsuitable habitat. Recent gene flow estimates from BAYESASS indicate that both species experience some within population gene flow and red squirrels may be more structured than northern flying squirrels because of lower migration rates. Concordant patterns of genetic structure in northern flying and red squirrels indicate that other species’ movements in the Black Hills may be affected by topography and habitat. Because their habitat is isolated in the Black Hills, management practices and conservation measures are recommended to promote viability and survival of each species.

High river temperature reduces survival of sockeye salmon (Oncorhynchus nerka) approaching spawning grounds and exacerbates female mortality

2012 ◽  
Vol 69 (2) ◽  
pp. 330-342 ◽  
Author(s):  
Eduardo G. Martins ◽  
Scott G. Hinch ◽  
David A. Patterson ◽  
Merran J. Hague ◽  
Steven J. Cooke ◽  
...  
Keyword(s):  
Water Temperature ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Thermal Conditions ◽  
Fraser River ◽  
Female Mortality ◽  
River Section ◽  
Spawning Grounds ◽  
River Temperature ◽  
Related Mortality

Recent studies have shown that warm temperatures reduce survival of adult migrating sockeye salmon ( Oncorhynchus nerka ), but knowledge gaps exist on where high-temperature-related mortality occurs along the migration and whether females and males are differentially impacted by river temperature. In this study, we monitored 437 radio-tagged Fraser River sockeye salmon and used capture–mark–recapture modelling approaches to investigate whether river thermal conditions differentially influence (i) spatial patterns of survival along a 413-km stretch of migration and (ii) survival of the sexes. Regardless of water temperature, survival decreased in the river section containing the most hydraulically difficult passages of the migration. However, when water temperature was warm (19 °C), survival decreased even further in the final 186 km of the migration prior to reaching the spawning grounds, particularly in females. Female and male survival differed but only when they experienced warm river temperatures. Under such conditions, the overall freshwater migration survival of males was 1.6 times higher (0.79 ± 0.09 standard error, SE) than that of females (0.50 ± 0.11 SE). As maturing female sockeye salmon maintain higher levels of plasma cortisol compared with males, we suspect that females could be immuno-compromised and thus less resistant to pathogens whose rates of development are accelerated by warm temperatures.

Limited behavioural thermoregulation by adult upriver-migrating sockeye salmon (Oncorhynchus nerka) in the Lower Fraser River, British Columbia

2009 ◽  
Vol 87 (6) ◽  
pp. 480-490 ◽  
Author(s):  
M. R. Donaldson ◽  
S. J. Cooke ◽  
D. A. Patterson ◽  
S. G. Hinch ◽  
D. Robichaud ◽  
...  
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Radio Telemetry ◽  
Oncorhynchus Nerka ◽  
Migration Route ◽  
Fraser River ◽  
Body Temperatures ◽  
Study Region ◽  
Ambient Temperatures ◽  
And Migration

The objective of this study was to combine radio telemetry with individual thermal loggers to assess the extent to which adult migrating sockeye salmon ( Oncorhynchus nerka (Walbaum in Artedi, 1792)) behaviourally thermoregulate during their migration through the Fraser River mainstem, British Columbia. The Fraser mainstem represents a region of the migration route that contains some of the highest mean temperatures encountered by sockeye salmon during their life history. We found that throughout the study area, individual sockeye salmon body temperatures occasionally deviated from ambient temperatures (ΔT), yet individuals maintained a ΔT of –1 °C or cooler for only 5% of their migration through the study region. There were moderate mean deviations of ΔT in two segments that are known to contain thermally stratified waters. In one of the study segments with the greatest ΔT, mean body temperatures decreased as river temperatures increased and ΔT became increasingly positive with higher river discharge rates, but these relationships were not observed in any of the other study segments. No relationship existed between ΔT and migration rate. While periodic associations with cool water were evident, mean body temperatures were not significantly different than mean river temperatures throughout the lower Fraser mainstem. This finding raises further conservation concerns for vulnerable Fraser River sockeye stocks that are predicted to encounter increasing peak summer river temperatures in the coming decades.

Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka)

2010 ◽  
Vol 17 (1) ◽  
pp. 99-114 ◽  
Author(s):  
EDUARDO G. MARTINS ◽  
SCOTT G. HINCH ◽  
DAVID A. PATTERSON ◽  
MERRAN J. HAGUE ◽  
STEVEN J. COOKE ◽  
...  
Keyword(s):  
Climate Warming ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Fraser River ◽  
River Temperature
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