Protamine-like proteins: evidence for a novel chromatin structure

2002 ◽  
Vol 80 (3) ◽  
pp. 353-361 ◽  
Author(s):  
John D Lewis ◽  
Juan Ausió
Keyword(s):  
Protein Expression ◽  
Chromatin Structure ◽  
Related Species ◽  
Marine Invertebrates ◽  
Protein Sequences ◽  
Careful Examination ◽  
Closely Related Species ◽  
Post Translational Modifications ◽  
High Degree ◽  
Degree Of Heterogeneity

Protamine-like (PL) proteins are DNA-condensing proteins that replace somatic-type histones during spermatogenesis. Their composition suggests a function intermediate to that of histones and protamines. Although these proteins have been well characterized at the chemical level in a large number of species, particularly in marine invertebrates, little is known about the specific structures arising from their interaction with DNA. Speculation concerning chromatin structure is complicated by the high degree of heterogeneity in both the number and size of these proteins, which can vary considerably even between closely related species. After careful examination and comparison of the protein sequences available to date for the PL proteins, we propose a model for a novel chromatin structure in the sperm of these organisms that is mediated by somatic-type histones, which are frequently found associated with these proteins. This structure supports the concept that the PL proteins may represent various evolutionary steps between a sperm-specific histone H1 precursor and true protamines. Potential post-translational modifications and the control of PL protein expression and deposition are also discussed.Key words: protamine-like proteins, histones, chromatin structure, sperm, evolution.

Reproductive performance in a phyletic dwarf, the spider crab Petramithrax pygmaeus (Bell, 1836) (Decapoda: Brachyura: Mithracidae)

2020 ◽  
Vol 40 (3) ◽  
pp. 325-329
Author(s):  
Joshua T Fields ◽  
Hayden K Mullen ◽  
Clayr M Kroenke ◽  
Kyla A Salomon ◽  
Abby J Craft ◽  
...  
Keyword(s):  
Body Size ◽  
Reproductive Performance ◽  
Related Species ◽  
Egg Production ◽  
Marine Invertebrates ◽  
Small Body ◽  
Reproductive Investment ◽  
Spider Crab ◽  
Closely Related Species ◽  
Body Sizes

Abstract The spider crab Petramithrax pygmaeus (Bell, 1836), a phyletic dwarf, was used to test predictions regarding reproductive performance in small marine invertebrates. Considering the disproportional increase in brooding costs and the allometry of egg production with increasing body size, it was expected that this minute-size species would produce large broods compared to closely related species that attain much larger body sizes. Fecundity in P. pygmaeus females carrying early and late eggs varied, respectively, between 17 and 172 eggs crab–1 (mean ± SD = 87.97 ± 48.39) and between 13 and 159 eggs crab–1 (55.04 ± 40.29). Females did not experience brood loss during egg development. Egg volume in females carrying early and late eggs varied, respectively, between 0.13 and 0.40 mm3 (0.22 ± 0.07) and between 0.15 and 0.42 mm3 (0.26 ± 0.06 mm3). Reproductive output (RO) varied between 0.91 and 8.73% (3.81 ± 2.17%) of female dry body weight. The RO of P. pygmaeus was lower than that reported for closely related species with larger body sizes. The slope (b = 0.95 ± 0.15) of the line describing the relationship between brood and parental female dry weight was not statistically significant from unity. Overall, our results disagree with the notion that the allometry of gamete production and increased physiological costs with increased brood size explain the association between brooding and small body size in marine invertebrates. Comparative studies on the reproductive investment of brooding species belonging to monophyletic clades with extensive differences in body size are warranted to further our understanding about disparity in egg production in brooding marine invertebrates.

scholarly journals Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

2008 ◽  
Vol 9 (1) ◽  
pp. 278 ◽  
Author(s):  
Oliver Keller ◽  
Florian Odronitz ◽  
Mario Stanke ◽  
Martin Kollmar ◽  
Stephan Waack
Keyword(s):  
Related Species ◽  
Protein Sequences ◽  
Closely Related Species

scholarly journals DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3234 ◽  
Author(s):  
David B. Stern ◽  
Eduardo Castro Nallar ◽  
Jason Rathod ◽  
Keith A. Crandall
Keyword(s):  
Dna Barcoding ◽  
Consumer Protection ◽  
Related Species ◽  
Cost Effective ◽  
The United States ◽  
Reference Sequence ◽  
Closely Related Species ◽  
Widespread Phenomenon ◽  
High Degree ◽  
Fertile Area

In Washington D.C., recent legislation authorizes citizens to test if products are properly represented and, if they are not, to bring a lawsuit for the benefit of the general public. Recent studies revealing the widespread phenomenon of seafood substitution across the United States make it a fertile area for consumer protection testing. DNA barcoding provides an accurate and cost-effective way to perform these tests, especially when tissue alone is available making species identification based on morphology impossible. In this study, we sequenced the 5′ barcoding region of the Cytochrome Oxidase I gene for 12 samples of vertebrate and invertebrate food items across six restaurants in Washington, D.C. and used multiple analytical methods to make identifications. These samples included several ambiguous menu listings, sequences with little genetic variation among closely related species and one sequence with no available reference sequence. Despite these challenges, we were able to make identifications for all samples and found that 33% were potentially mislabeled. While we found a high degree of mislabeling, the errors involved closely related species and we did not identify egregious substitutions as have been found in other cities. This study highlights the efficacy of DNA barcoding and robust analyses in identifying seafood items for consumer protection.

Microsatellite Marker: Importance and Implications of Cross-genome Analysis for Finger Millet (Eleusine coracana (L.) Gaertn)

2020 ◽  
Vol 9 (3) ◽  
pp. 160-170
Author(s):  
Thumadath P.A. Krishna ◽  
Maharajan Theivanayagam ◽  
Gurusunathan V. Roch ◽  
Veeramuthu Duraipandiyan ◽  
Savarimuthu Ignacimuthu
Keyword(s):  
Molecular Marker ◽  
Microsatellite Markers ◽  
Ssr Markers ◽  
Genome Analysis ◽  
Related Species ◽  
Finger Millet ◽  
Crop Improvement ◽  
Human Beings ◽  
Closely Related Species ◽  
Genome Amplification

Finger millet is a superior staple food for human beings. Microsatellite or Simple Sequence Repeat (SSR) marker is a powerful tool for genetic mapping, diversity analysis and plant breeding. In finger millet, microsatellites show a higher level of polymorphism than other molecular marker systems. The identification and development of microsatellite markers are extremely expensive and time-consuming. Only less than 50% of SSR markers have been developed from microsatellite sequences for finger millet. Therefore, it is important to transfer SSR markers developed for related species/genus to finger millet. Cross-genome transferability is the easiest and cheapest method to develop SSR markers. Many comparative mapping studies using microsatellite markers clearly revealed the presence of synteny within the genomes of closely related species/ genus. Sufficient homology exists among several crop plant genomes in the sequences flanking the SSR loci. Thus, the SSR markers are beneficial to amplify the target regions in the finger millet genome. Many SSR markers were used for the analysis of cross-genome amplification in various plants such as Setaria italica, Pennisetum glaucum, Oryza sativa, Triticum aestivum, Zea mays and Hordeum vulgare. However, there is very little information available about cross-genome amplification of these markers in finger millet. The only limited report is available for the utilization of cross-genome amplified microsatellite markers in genetic analysis, gene mapping and other applications in finger millet. This review highlights the importance and implication of microsatellite markers such as genomic SSR (gSSR) and Expressed Sequence Tag (EST)-SSR in cross-genome analysis in finger millet. Nowadays, crop improvement has been one of the major priority areas of research in agriculture. The genome assisted breeding and genetic engineering plays a very crucial role in enhancing crop productivity. The rapid advance in molecular marker technology is helpful for crop improvement. Therefore, this review will be very helpful to the researchers for understanding the importance and implication of SSR markers in closely related species.

scholarly journals Precision radiogenomics: fusion biopsies to target tumour habitats in vivo

2021 ◽  
Author(s):  
Mireia Crispin-Ortuzar ◽  
Evis Sala
Keyword(s):  
Ovarian Cancer ◽  
Ct Scans ◽  
High Grade ◽  
Serous Ovarian Cancer ◽  
High Degree ◽  
Degree Of Heterogeneity

SummaryHigh-grade serous ovarian cancer lesions display a high degree of heterogeneity on CT scans. We have recently shown that regions with distinct imaging profiles can be accurately biopsied in vivo using a technique based on the fusion of CT and ultrasound scans.

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