NMR spectroscopy of the phenyl derivative of germanium(IV) 5,10,15-tritolylcorrole

2016 ◽  
Vol 20 (01n04) ◽  
pp. 525-533
Author(s):  
Giampaolo Ricciardi ◽  
Daniel O. Cicero ◽  
Sara Lentini ◽  
Sara Nardis ◽  
Roberto Paolesse ◽  
...  
Keyword(s):  
Density Functional ◽  
Chemical Shifts ◽  
2D Nmr ◽  
Functional Theory ◽  
Phenyl Derivative ◽  
Shielding Constants ◽  
Shielding Tensor ◽  
Experimental Values ◽  
Molecular And Electronic Structure

A thoroughly structural characterization of (TTC)GePh (TTC [Formula: see text] 5,10,15-tritolylcorrole; Ph [Formula: see text] phenyl) in solution has been carried out through a combination of 2D NMR (1H-1H COSY, 1H-1H ROESY, 1H-[Formula: see text]C HSQC and 1H-[Formula: see text]C HMBC) experiments and density functional theory (DFT) calculations of the molecular and electronic structure and the shielding constants. The 1H and [Formula: see text]C chemical shifts computed at DFT-S12g and DFT-SAOP levels of theory nicely reproduce the experimental values, the agreement between theory and experiment being especially good for the DFT-S12g results. The calculations prove to be able to capture the fine details of the NMR spectra and to resolve some assignment ambiguities related to the inherent conformational flexibility of the macrocycle. The calculations also provide an explanation of the observed chemical shift trends in terms of diamagnetic and paramagnetic components of the shielding tensor.

scholarly journals A theoretical investigation on the isomerism and the NMR properties of thiosemicarbazones

2007 ◽  
Vol 5 (2) ◽  
pp. 396-419 ◽  
Author(s):  
N. Nuwan De Silva ◽  
Titus Albu
Keyword(s):  
Density Functional ◽  
Chemical Shifts ◽  
Intermolecular Hydrogen Bond ◽  
Density Functional Theory Calculations ◽  
Functional Theory ◽  
1H And 13C Nmr ◽  
Nmr Characterization ◽  
Hybrid Density Functional ◽  
Nmr Properties

AbstractHybrid density functional theory calculations at the mPW1PW91/6-31+G(d,p) level of theory have been used to investigate the optimized structures and other molecular properties of five different series of thiosemicarbazones. The investigated compounds were obtained from acenaphthenequinone, isatin and its derivatives, and alloxan. The focus of the study is the isomerism and the NMR characterization of these thiosemicarbazones. It was found that only one isomer is expected for thiosemicarbazones and methylthiosemicarbazones, while for dimethylthiosemicarbazones, two isomers are possible. All investigated thiosemicarbazones exhibit a hydrazinic proton that is highly deshielded and resonates far downfield in the proton NMR spectra. This proton is a part of a characteristic sixmembered ring, and its NMR properties are a result of its strong, intermolecular hydrogen bond. The relationships between the calculated 1H and 13C NMR chemical shifts and various geometric parameters are reported.

scholarly journals Hybrid density functional theory investigation of a series of alloxan-based thiosemicarbazones and semicarbazones

2006 ◽  
Vol 4 (4) ◽  
Author(s):  
N. Nuwan De Silva ◽  
Edward Lisic ◽  
Titus Albu
Keyword(s):  
Density Functional ◽  
Chemical Shifts ◽  
Functional Theory ◽  
1H And 13C Nmr ◽  
Hydrogen Bond Interactions ◽  
Linear Relationships ◽  
Nmr Characterization ◽  
The Relationship ◽  
Hybrid Density Functional

AbstractRecently, the synthesis and the NMR characterization of a series of eight alloxan-based thiosemicarbazones and semicarbazones were reported. These compounds exhibit a strongly hydrogenbonded hydrazinic proton that is a part of a characteristic six-membered ring. This proton is highly deshielded and resonates far downfield in the proton NMR spectra. In this report, mPW1PW91/6-31+G(d,p) calculations have been used to investigate the structure and other molecular properties of this series of eight compounds. The relationship between the 1H and 13C NMR chemical shifts and various geometric parameters was investigated, and linear relationships for proton peaks that are involved in hydrogen-bond interactions were found.

scholarly journals Structural characterization of kaempferol: a spectroscopic and computational study

2019 ◽  
Vol 38 (1) ◽  
pp. 49 ◽  
Author(s):  
Dejan Milenković ◽  
Jasmina M Dimitrić Marković ◽  
Dušan Dimić ◽  
Svetlana Jeremić ◽  
Dragan Amić ◽  
...  
Keyword(s):  
Density Functional ◽  
Computational Study ◽  
Chemical Shifts ◽  
Absolute Error ◽  
Nbo Analysis ◽  
Basis Set ◽  
Functional Theory ◽  
The Density Functional Theory ◽  
Spectroscopic Characteristics

Calculations based on the density functional theory, with the B3LYP functional and the 6-311++G(d,p) basis set, were performed with the aim of confirming the molecular structure and spectroscopic characteristics of kaempferol, a naturally occurring flavonoid molecule. The electronic structure of kaempferol was examined using NBO analysis. The assigning of the experimentally obtained IR and Raman spectra was performed after the best-fit-based comparison with theoretical spectra. The 13C and 1H NMR experimental spectra were related to the theoretically obtained values of the chemical shifts determined by the GIAO method. The correlation coefficient and the average absolute error values proved B3LYP-D3 to be an adequate method in describing the NMR parameters of kaempferol. Molecular docking analysis was carried out in order to identify the potency of inhibition of the title molecule against human procalcitonin. The inhibition activity was obtained for 10 conformations of ligand inside the protein.

scholarly journals Isolation, Identification, Molecular and Electronic Structure, Vibrational Spectroscopic Investigation, and Anti-HIV-1 Activity of Karanjin Using Density Functional Theory

2014 ◽  
Vol 2014 ◽  
pp. 1-13 ◽  
Author(s):  
Anoop kumar Pandey ◽  
Abhishek Kumar Bajpai ◽  
Ashok Kumar ◽  
Mahesh Pal ◽  
Vikas Baboo ◽  
...  
Keyword(s):  
Density Functional Theory ◽  
Electronic Structure ◽  
Spectroscopic Investigation ◽  
Density Functional ◽  
Ground State Structure ◽  
Functional Theory ◽  
Experimental Values ◽  
Anti Hiv ◽  
Molecular And Electronic Structure ◽  
Hiv 1

“Karanjin” (3-methoxy furano-2,3,7,8-flavone) is an anti-HIV drug, and it is particularly effective in the treatment of gastric problems. The method of isolation of “Karanjin” followed the Principles of Green Chemistry (eco-friendly and effortless method). The optimized geometry of the “Karanjin” molecule has been determined by the method of density functional theory (DFT). Using this optimized structure, we have calculated the infrared wavenumbers and compared them with the experimental data. The calculated wavenumbers are in an excellent agreement with the experimental values. On the basis of fully optimized ground-state structure, TDDFT//B3LYP/LANL2DZ calculations have been used to determine the low-lying excited states of Karanjin. Based on these results, we have discussed the correlation between the vibrational modes and the crystalline structure of “Karanjin.” A complete assignment is provided for the observed FTIR spectra. This is the first report of the isolation, molecular and electronic structure using vibrational spectroscopic investigation, density functional theory, and anti-HIV-1 activity of “Karanjin.”

scholarly journals Heterometallic boride clusters: synthesis and characterization of butterfly and square pyramidal boride clusters*

2018 ◽  
Vol 90 (4) ◽  
pp. 665-675 ◽  
Author(s):  
Ranjit Bag ◽  
Bijan Mondal ◽  
K. Bakthavachalam ◽  
Thierry Roisnel ◽  
Sundargopal Ghosh
Keyword(s):  
Boron Atom ◽  
Density Functional ◽  
Chemical Shifts ◽  
Dft Methods ◽  
Functional Theory ◽  
Pyramidal Geometry ◽  
Valence Electrons ◽  
Square Pyramidal Geometry ◽  
Optimized Geometries

AbstractA number of heterometallic boride clusters have been synthesized and structurally characterized using various spectroscopic and crystallographic analyses. Thermolysis of [Ru3(CO)12] with [Cp*WH3(B4H8)] (1) yielded [{Cp*W(CO)2}2(μ4-B){Ru(CO)3}2(μ-H)] (2), [{Cp*W(CO)2}2(μ5-B){Ru(CO)3}2{Ru(CO)2}(μ-H)] (3), [{Cp*W(CO)2}(μ5-B){Ru(CO)3}4] (4) and a ditungstaborane cluster [(Cp*W)2B4H8Ru(CO)3] (5) (Cp*=η5-C5Me5). Compound2contains 62 cluster valence-electrons, in which the boron atom occupies the semi-interstitial position of a M4-butterfly core, composed of two tungsten and two ruthenium atoms. Compounds3and4can be described as hetero-metallic boride clusters that contain 74-cluster valence electrons (cve), in which the boron atom is at the basal position of the M5-square pyramidal geometry. Cluster5is analogous to known [(Cp*W)2B5H9] where one of the BH vertices has been replaced by isolobal {Ru(CO)3} fragment. Computational studies with density functional theory (DFT) methods at the B3LYP level have been used to analyze the bonding of the synthesized molecules. The optimized geometries and computed11B NMR chemical shifts satisfactorily corroborate with the experimental data. All the compounds have been characterized by mass spectrometry, IR,1H,11B and13C NMR spectroscopy, and the structural architectures were unequivocally established by crystallographic analyses of clusters2–5.

Synthesis, Conformational Analysis and Crystal Structure of New Thioxo, Oxo, Seleno Diastereomeric Cyclophosphamides Containing 1,3,2-dioxaphosphorinane

2019 ◽  
Vol 23 (2) ◽  
pp. 205-213
Author(s):  
Dorra Kanzari-Mnallah ◽  
Med L. Efrit ◽  
Jiří Pavlíček ◽  
Frédéric Vellieux ◽  
Habib Boughzala ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Crystal Structure ◽  
Density Functional ◽  
Chemical Shifts ◽  
Structural Determination ◽  
Conformational Study ◽  
Functional Theory ◽  
One Step ◽  
High Resolution Mass Spectroscopy ◽  
Resolution Mass

Thioxo, Oxo and Seleno diastereomeric cyclophosphamides containing 1,3,2- dioxaphosphorinane are prepared by a one-step chemical reaction. Their structural determination is carried out by means of Nuclear Magnetic Resonance NMR (31P, 1 H, 13C) and High-Resolution Mass Spectroscopy (HRMS). The conformational study of diastereomeric products is described. Density Functional Theory (DFT) calculations allowed the identification of preferred conformations. Experimental and calculated 31P, 13C, 1H NMR chemical shifts are compared. The molecular structure of the 2-Benzylamino-5-methyl-5- propyl-2-oxo-1,3,2-dioxaphosphorinane (3d) has been determined by means of crystal Xray diffraction methods.

scholarly journals Defect Properties and Lithium Incorporation in Li2ZrO3

Energies ◽  
2021 ◽  
Vol 14 (13) ◽  
pp. 3963
Author(s):  
Kobiny Antony Rex ◽  
Poobalasuntharam Iyngaran ◽  
Navaratnarajah Kuganathan ◽  
Alexander Chroneos
Keyword(s):  
Atomistic Simulation ◽  
Density Functional ◽  
Functional Theory ◽  
Lithium Zirconate ◽  
Simulation Based ◽  
Electrochemical Devices ◽  
Li Ion ◽  
Cluster Energy ◽  
Experimental Values ◽  
Lithium Incorporation

Lithium zirconate is a candidate material in the design of electrochemical devices and tritium breeding blankets. Here we employ an atomistic simulation based on the classical pair-wise potentials to examine the defect energetics, diffusion of Li-ions, and solution of dopants. The Li-Frenkel is the lowest defect energy process. The Li-Zr anti-site defect cluster energy is slightly higher than the Li-Frenkel. The Li-ion diffuses along the c axis with an activation energy of 0.55 eV agreeing with experimental values. The most favorable isovalent dopants on the Li and Zr sites were Na and Ti respectively. The formation of additional Li in this material can be processed by doping of Ga on the Zr site. Incorporation of Li was studied using density functional theory simulation. Li incorporation is exoergic with respect to isolated gas phase Li. Furthermore, the semiconducting nature of LZO turns metallic upon Li incorporation.

scholarly journals Structural and computational investigation of an imine-based propeller-shaped macrocyclic cage

2021 ◽  
Vol 3 (2) ◽  
Author(s):  
Sriram Srinivasa Raghvan ◽  
Suresh Madhu ◽  
Velmurugan Devadasan ◽  
Gunasekaran Krishnasamy
Keyword(s):  
Band Gap ◽  
Density Functional ◽  
Strain Tensor ◽  
Strong Interactions ◽  
Soft Condensed Matter ◽  
Functional Theory ◽  
Self Assembling ◽  
Phenyl Rings ◽  
Crystal Volume

AbstractIn this study, we present the synthesis, spectroscopic and structural characterization of self-assembling gem-dimethyl imine based molecular cage (IMC). Self-assembling macrocycles and cages have well-defined cavities and have extensive functionalities ranging from energy storage, liquid crystals, and catalysts to water splitting photo absorber. IMC has large voids i.e., 25% of the total crystal volume thus could accommodate wide substrates. The synthesized imine-based molecular cages are stabilized by coaxial π bonded networks and long-range periodic van der Waal and non-bonded contacts as observed from the crystal structure. IMC also has typical properties of soft condensed matter materials, hence theoretical prediction of stress and strain tensor along with thermophysical properties were computed on crystal system and were found to be stable. Molecular dynamics revealed IMC is stabilized by, strong interactions between the interstitial phenyl rings. Density functional theory (DFT) based physicochemical properties were evaluated and has band gap of around 2.38ev (520 nm) similar to various photocatalytic band gap materials.

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