scholarly journals Microsatellites Cross-Species Amplification across Some African Cichlids

2012 ◽  
Vol 2012 ◽  
pp. 1-7 ◽  
Author(s):  
Etienne Bezault ◽  
Xavier Rognon ◽  
Karim Gharbi ◽  
Jean-Francois Baroiller ◽  
Bernard Chevassus
Keyword(s):  
Microsatellite Markers ◽  
Oreochromis Niloticus ◽  
Molecular Genetic ◽  
Point Of View ◽  
Genetic Studies ◽  
African Cichlid ◽  
Wide Range ◽  
The Mean ◽  
High Level ◽  
African Cichlids

The transfer of the genomic resources developed in the Nile tilapia, Oreochromis niloticus, to other Tilapiines sensu lato and African cichlid would provide new possibilities to study this amazing group from genetics, ecology, evolution, aquaculture, and conservation point of view. We tested the cross-species amplification of 32 O. niloticus microsatellite markers in a panel of 15 species from 5 different African cichlid tribes: Oreochromines (Oreochromis, Sarotherodon), Boreotilapiines (Tilapia), Chromidotilapines, Hemichromines, and Haplochromines. Amplification was successfully observed for 29 markers (91%), with a frequency of polymorphic (P95) loci per species around 70%. The mean number of alleles per locus and species was 3.2 but varied from 3.7 within Oreochromis species to 1.6 within the nontilapia species. The high level of cross-species amplification and polymorphism of the microsatellite markers tested in this study provides powerful tools for a wide range of molecular genetic studies within tilapia species as well as for other African cichlids.

The way of value of Correlation of genomic DNA microsatellite loci and live weight of Chukchi reindeer

2020 ◽  
pp. 27-32
Author(s):  
V. Dodokhov ◽  
N. Pavlova ◽  
T. Rumyantseva ◽  
L. Kalashnikova
Keyword(s):  
Microsatellite Markers ◽  
Agricultural Production ◽  
Live Weight ◽  
Biodiversity Loss ◽  
Tribal Community ◽  
High Germination ◽  
Wide Range ◽  
The Mean ◽  
High Level ◽  
Dna Microsatellite

The article presents the genetic characteristic of the Chukchi reindeer breed. The object of the study was of the Chukchi reindeer. In recent years, the number of reindeer of the Chukchi breed has declined sharply. Reduced reindeer numbers could lead to biodiversity loss. The Chukchi breed of deer has good meat qualities, has high germination viability and is adapted in adverse tundra conditions of Yakutia. Herding of the Chukchi breed of deer in Yakutia are engaged only in the Nizhnekolymsky district. There are four generic communities and the largest of which is the agricultural production cooperative of nomadic tribal community «Turvaurgin», which was chosen to assess the genetic processes of breed using microsatellite markers: Rt6, BMS1788, Rt 30, Rt1, Rt9, FCB193, Rt7, BMS745, C 143, Rt24, OheQ, C217, C32, NVHRT16, T40, C276. It was found that microsatellite markers have a wide range of alleles and generally have a high informative value for identifying of genetic differences between animals and groups of animal. The number of identified alleles is one of the indicators of the genetic diversity of the population. The total number of detected alleles was 127. The Chukchi breed of deer is characterized by a high level of heterozygosity, and the random crossing system prevails over inbreeding in the population. On average, there were 7.9 alleles (Na) per locus, and the mean number of effective alleles (Ne) was 4.1. The index of fixation averaged 0.001. The polymorphism index (PIC) ranged from 0.217 to 0.946, with an average of 0.695.

Molecular genetic studies on Nellore and Deccani sheep using microsatellite markers

2017 ◽  
Author(s):  
P. Amareswari ◽  
M. Gnana Prakash ◽  
B. Ekambaram ◽  
M. Mahendar ◽  
Ch Hari Krishna
Keyword(s):  
Microsatellite Markers ◽  
Genetic Architecture ◽  
Molecular Genetic ◽  
Inbreeding Coefficient ◽  
Conservation Priority ◽  
Genetic Studies ◽  
Sheep Breeds ◽  
Expected Heterozygosity ◽  
The Mean ◽  
Nellore Sheep

The study was undertaken to understand the genetic architecture of Deccani and Nellore sheep breeds and to assess the genetic distance between the breeds. Allele diversity, genetic variability and population structure in the two breeds were estimated using 30 microsatellite markers. A total of 100 sheep, 50 each from Deccani and Nellore breeds were genotyped. The total number of alleles observed was 254 and 260 in Deccani and Nellore, respectively. The mean expected heterozygosity among the breeds ranged from 0.79 (Deccani) to 0.80 (Nellore) whereas the mean observed heterozygosity levels ranged from 0.77 in Deccani to 0.78 in Nellore sheep. The overall mean inbreeding coefficient was 0.029 in Deccani and 0.031 in Nellore sheep and of the 30 loci studied, 14 loci in Deccani and 16 loci in Nellore sheep showed negative inbreeding coefficient indicating the presence of outbreeding. However, eight loci (BM1314, BM6506, BM8125, ILSTS28, MAF70, MCM140, OarCB226 and OarFCB128) showed positive, mild to moderate inbreeding ranging from 0.007 to 0.25 in Deccani and 0.066 to 0.37 in Nellore sheep studied. The FIS values ranged from -0.372 to 0.74, FST values ranged from 0.001 to 0.172 and FIT values ranged from -0.370 to 0.728 between the Deccani and Nellore sheep breeds studied. The PIC values ranged from 0.498 to 0.886 with a mean of 0.773 in Deccani and from 0.574 to 0.894 with a mean of 0.777 in Nellore breed. The information generated from the present study will be valuable for setting conservation priority of these two breeds.

scholarly journals Genetic diversity in Brazilian tall coconut populations by microsatellite markers

2013 ◽  
Vol 13 (4) ◽  
pp. 356-362 ◽  
Author(s):  
Francisco Elias Ribeiro ◽  
Luc Baudouin ◽  
Patricia Lebrun ◽  
Lázaro José Chaves ◽  
Claudio Brondani ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Cape Verde ◽  
Coconut Palm ◽  
Different Populations ◽  
The Mean ◽  
High Level ◽  
Brazilian Populations

The tall coconut palm was introduced in Brazil in 1553, originating from the island of Cape Verde. The aim of the present study was to evaluate the genetic diversity of ten populations of Brazilian tall coconut by 13 microsatellite markers. Samples were collected from 195 individuals of 10 different populations. A total of 68 alleles were detected, with an average of 5.23 alleles per locus. The mean expected and observed heterozygosity value was 0.459 and 0.443, respectively. The number of alleles per population ranged from 36 to 48, with a mean of 40.9 alleles. We observed the formation of two groups, the first formed by the populations of Baía Formosa, Georgino Avelino and São José do Mipibu, and the second by the populations of Japoatã, Pacatuba and Praia do Forte. These results reveal a high level of genetic diversity in the Brazilian populations.

scholarly journals Cross-amplification of heterologous microsatellite markers in Piracanjuba

2017 ◽  
Vol 47 (12) ◽  
Author(s):  
Pedro Luiz de Castro ◽  
Ricardo Pereira Ribeiro ◽  
Silvio Carlos Alves dos Santos ◽  
Elenice Souza dos Reis Goes ◽  
Felipe Pinheiro de Souza ◽  
...  
Keyword(s):  
Genetic Variability ◽  
Microsatellite Markers ◽  
Oreochromis Niloticus ◽  
Genetic Parameters ◽  
Economic Value ◽  
Current Analysis ◽  
Genetic Studies ◽  
Colossoma Macropomum ◽  
Piaractus Mesopotamicus ◽  
Cross Amplification

ABSTRACT: Brycon orbignyanus, popularly known in Brazil as piracanjuba, is a fish with great economic value but whose natural population drastically decreased in number during the last years. In this context, genetic variability studies of natural stocks and in restocking programs are fundamental for the adoption of conservation measures. Current analysis verifies the cross-amplification of heterologous primers in B. orbignyanus. Fifty-two primers of the species Brycon opalinus, Brycon hilarii, Brycon insignis, Prochilodus sp., Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus were tested. Primers with the best reproducibility were applied to a sample of 20 individuals and the genetic parameters were calculated. Nine primers provided good results for cross-amplification with B. orbignyanus, involving (BoM5 and BoM13) of Brycon opalinus, (Bh5, Bh6, Bh8, Bh13 and Bh16) of Brycon hilarii, (Bc48-10) of Brycon insignis and (Par80) of Prochilodus argenteus. Primers of Piaractus mesopotamicus, Colossoma macropomum and Oreochromis niloticus failed to provide amplification or provided non-specificity. Results demonstrated the possibility of using primers of different species and genera of B. orbignyanus, facilitating genetic studies on the species.

Cross-species amplification and characterization of microsatellite loci in Pinus mugo Turra

Biologia ◽  
2013 ◽  
Vol 68 (4) ◽  
Author(s):  
Konrad Celiński ◽  
Ewa Pawlaczyk ◽  
Aleksandra Wojnicka-Półtorak ◽  
Ewa Chudzińska ◽  
Wiesław Prus-Głowacki
Keyword(s):  
Microsatellite Markers ◽  
Polymorphic Information Content ◽  
Pinus Mugo ◽  
Genetic Studies ◽  
Transfer Rates ◽  
Isolation And Characterization ◽  
Nuclear Microsatellite ◽  
European Mountain ◽  
High Level

AbstractPinus mugo (dwarf mountain pine) is an important component of European mountain ecosystems. However, little is known about the present genetic structure and population differentiation of this species at the DNA level, possibly due to a lack of nuclear microsatellite markers (SSR) developed for Pinus mugo. Therefore in this study we transferred microsatellite markers originally developed for Pinus sylvestris and Pinus taeda to Pinus mugo. This cross-species amplification approach is much faster and less expensive than isolation and characterization of new microsatellite markers. The transfer rates from the source species to Pinus mugo were moderately low (26%). There were no differences in microsatellite repeat motifs between the source species and Pinus mugo. Nuclear microsatellite markers successfully transferred to Pinus mugo can be applied to various genetic studies on this species, due to the high level of their polymorphism and high value of polymorphic information content.

Genetic differentiation in populations of the cestode Bothriocephalus acheilognathi (Cestoda, Pseudophyllidea) as revealed by eight microsatellite markers

Parasitology ◽  
2003 ◽  
Vol 126 (5) ◽  
pp. 493-501 ◽  
Author(s):  
H. Y. LUO ◽  
P. NIE ◽  
Y. A. ZHANG ◽  
W. J. YAO ◽  
G. T. WANG
Keyword(s):  
Genetic Structure ◽  
Genetic Differentiation ◽  
Microsatellite Markers ◽  
Polymorphic Information Content ◽  
Random Mating ◽  
Genetic Structure Of Populations ◽  
Bothriocephalus Acheilognathi ◽  
The Mean ◽  
High Level ◽  
Cross Fertilization

The genetic structure of populations of the fish cestode, Bothriocephalus acheilognathi collected from Bailianhe Reservoir (BLH), Changshou (CSH) and Liangzi (LZH) Lakes was investigated by using 8 microsatellite loci. A total of 108 adult worms were genotyped at each of the 8 loci. For the 3 populations, the mean number of alleles per locus ranged from 2·38 to 5·5, and the mean expected heterozygosity ranged from 0·432 to 0·559. The average polymorphic information content (PIC) was from 0·384 to 0·492. The significant Fis values indicated non-random mating within LZH and BLH populations. On the other hand, when samples were further classified into subpopulations at the level of host fish species, no or little heterozygote deficiency was detected at most loci, showing that cross-fertilization, predominantly, but not exclusively, must have occurred within the subpopulations. Microsatellite markers also revealed an unexpected high level of genetic differentiation, as measured by Rst and Nm values or by δu2 genetic distance among subpopulations from different hosts. Factors influencing the population genetic structure and the parasite host specificity are discussed.

MOSQITO: an open-source and free toolbox for sound quality metrics in the industry and education

2021 ◽  
Vol 263 (5) ◽  
pp. 1164-1175
Author(s):  
Roberto San Millán-Castillo ◽  
Eduardo Latorre-Iglesias ◽  
Martin Glesser ◽  
Salomé Wanty ◽  
Daniel Jiménez-Caminero ◽  
...  
Keyword(s):  
Open Source ◽  
Programming Languages ◽  
Open Source Software ◽  
Objective Assessment ◽  
Sound Quality ◽  
Quality Metrics ◽  
Point Of View ◽  
Wide Range ◽  
Efficient Learning ◽  
High Level

Sound quality metrics provide an objective assessment of the psychoacoustics of sounds. A wide range of metrics has been already standardised while others remain as active research topics. Calculation algorithms are available in commercial equipment or Matlab scripts. However, they may not present available data on general documentation and validation procedures. Moreover, the use of these tools might be unaffordable for some students and independent researchers. In recent years, the scientific and technical community has been developing uncountable open-source software projects in several knowledge fields. The permission to use, study, modify, improve and distribute open-source software make it extremely valuable. It encourages collaboration and sharing, and thus transparency and continuous improvement of the coding. Modular Sound Quality Integrated Toolbox (MOSQITO) project relies on one of the most popular high-level and free programming languages: Python. The main objective of MOSQITO is to provide a unified and modular framework of key sound quality and psychoacoustics metrics, free and open-source, which supports reproducible testing. Moreover, open-source projects can be efficient learning tools at University degrees. This paper presents the current structure of the toolbox from a technical point of view. Besides, it discusses open-source development contributions to graduates training.

Assessment of changes in biochemical parameters and their role as markers of pathological processes

2020 ◽  
pp. 57-63
Author(s):  
Olga Alekseevna Petrischeva
Keyword(s):  
Biochemical Parameters ◽  
Laboratory Tests ◽  
Correct Diagnosis ◽  
Molecular Genetic ◽  
Clinical Situation ◽  
Test Results ◽  
Genetic Studies ◽  
Maximum Information ◽  
Wide Range ◽  
The One

The data of laboratory tests can often provide up to 70% of information about the disease, and the test results can help the doctor not only in the correct diagnosis and competent prescription of treatment, but also should be aimed at conducting a subsequent assessment of its effectiveness. At the present stage, laboratory tests are represented by a wide range of clinical, immunological, biochemical, microbiological, histological and molecular genetic studies. Evaluation of some parameters (for example, a clinical blood test and a general urinalysis) is carried out practically at each patient's request for medical help, while others are evaluated only if there are indications. For example, if a patient complains of severe dysuric disorders, determining the level of amylase in this case will be uninformative, but urinalysis according to Nechiporenko will contribute to the correct diagnosis. A doctor of a clinical specialty, on the one hand, must clearly understand which tests can help in making a diagnosis and will carry the maximum information content, and, on the other hand, try to avoid unnecessary prescription of tests that have low evidence in a particular clinical situation. One of the most frequently prescribed tests is the conduct of biochemical studies, therefore, in today's article we will try to figure out how biochemical parameters change in various pathological processes, and what information they can bring.

Molecular genetic research on IQ: can it be done? Should it be done?

1996 ◽  
Vol 28 (4) ◽  
pp. 490-507 ◽  
Author(s):  
Jo Daniels ◽  
Peter McGuffin ◽  
Mike Owen
Keyword(s):  
Single Gene ◽  
Molecular Genetic ◽  
Genetic Research ◽  
Cultural Factors ◽  
Shared Environment ◽  
Religious Denomination ◽  
Genetic Investigation ◽  
Genetic Studies ◽  
Single Gene Disorders ◽  
Wide Range

An obvious requirement before embarking on molecular genetic investigation of a trait is prior evidence from ‘classic’ genetic studies that there is indeed a genetic component. Many behavioural traits are familial and these range from comparatively uncommon single gene disorders such as Huntington's disease which has a typical mendelian dominant pattern of transmission, to much commoner characteristics such as career choice or religious denomination which, it might be assumed, are heavily influenced by cultural factors. In between, there is a wide range of attributes including personality type, cognitive ability and liability to common disorders such as depression, that show a tendency to run in families, and which could conceivably be explained by shared genes, shared environment or a combination of the two.

scholarly journals Agonist-bound nuclear receptors: not just targets of coactivators

2003 ◽  
Vol 31 (1) ◽  
pp. 1-7 ◽  
Author(s):  
I Fernandes ◽  
JH White
Keyword(s):  
Nuclear Receptors ◽  
Target Gene ◽  
Molecular Genetic ◽  
Agonist Binding ◽  
Full Understanding ◽  
Genetic Studies ◽  
Nuclear Receptor Superfamily ◽  
Wide Range ◽  
Target Promoters ◽  
Target Gene Transcription

Members of the nuclear receptor superfamily of ligand-regulated transcription factors are targets of a wide range of lipophilic signaling molecules as well as several drugs and xenobiotics that modulate many aspects of physiology and metabolism. Agonist binding to receptors is associated with recruitment of coactivators, which are essential for activation of target gene transcription. However, several biochemical and molecular genetic studies have shown that a full understanding of the function of agonist-bound receptors must also accommodate the recruitment of corepressors. These factors may attenuate agonist-induced transactivation, act more transiently as part of a cycle of cofactors recruited to target promoters by ligand-bound receptors, or function in hormone-dependent repression of target gene expression.

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