Systematic position of Paulsilvella in the Lithophylloideae (Corallinaceae, Rhodophyta) confirmed by molecular data

Phytotaxa ◽  
2014 ◽  
Vol 190 (1) ◽  
pp. 94 ◽  
Author(s):  
Beatriz Nogueira Torrano-Silva ◽  
Rafael Riosmena-Rodríguez ◽  
Mariana Cabral de Oliveira
Keyword(s):  
Molecular Markers ◽  
Morphological Analysis ◽  
Original Description ◽  
Molecular Data ◽  
Systematic Position ◽  
Ssu Rdna ◽  
New Hosts ◽  
Columnar Cells ◽  
Relevant Range ◽  
Thallus Surface

New specimens of Paulsilvella huveorum were collected in Brazil at Baía de Ilha Grande, Rio de Janeiro, and Sebastião Gomes reef, Bahia. This new collections represent a relevant range extension and new hosts for the species (Amphiroa beauvoisii, Jania cubensis and non-identified Hydrozoa and Bryozoa) and enabled the first DNA amplifications for Paulsilvella. The systematic position of Pausilvella in the subfamily Lithophylloideae is confirmed based on SSU rDNA, psbA and rbcL molecular markers. Morphologically and anatomically the specimens are similar to the original description in where basal dimerous thalli with monomeric erect branches characterize the genus. But, the analyzed carposporangial conceptacles express the roof position varying from flush or above the thallus surface, the chambers always buried within tiers of columnar cells, suggesting that this feature is variable within the species and might also suggest that P. huveorum and the fossil P. antiqua should be considered as potential synonyms. We do not want to suggest this clump waiting for more collections from different geographical areas in where new data may support our idea. Our results strongly suggest that the subfamily Lithophylloideae urgently needs to be reviewed to delimit genera based on molecular and morphological analysis because monomeric and dimeric thalli organization have evolved several times in the group.

scholarly journals Congruence Between Molecular Data and Morphology: Phylogenetic Position of Senodoniini (Coleoptera: Elateridae)

Insects ◽  
2019 ◽  
Vol 10 (8) ◽  
pp. 231 ◽  
Author(s):  
Robin Kundrata ◽  
Alexander S. Prosvirov ◽  
Dominik Vondracek ◽  
Eliska Sormova
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Markers ◽  
Southeast Asia ◽  
Morphological Characters ◽  
Molecular Data ◽  
Systematic Position ◽  
Phylogenetic Position ◽  
Monotypic Genus ◽  
Click Beetles ◽  
East And Southeast Asia

Senodoniini is a small lineage of click beetles currently comprising 21 species in two genera, distributed in the Himalayas and East and Southeast Asia. The definition and limits of this group have changed considerably during its history. Recent authors treat Senodoniini as a tribe within Dendrometrinae, usually close to Dimini, but this placement has never been rigorously tested. Here, we shed new light on the systematic position and limits of Senodoniini by performing a combined phylogenetic analysis of two nuclear and two mitochondrial molecular markers. Our results recovered Senodoniini not monophyletic, and placed them into the Lissominae complex, where they formed a clade with Austrelater Calder & Lawrence (Protelaterini). Molecular phylogeny is in agreement with the adult morphology. Additionally, we examined the morphology of a monotypic genus Rostricephalus Fleutiaux from Southeast Asia, which was previously classified in various Elateridae groups including Senodoniini, and its position was always uncertain. This genus shares morphological characters with Protelaterini. We provide morphological redescriptions as well as the figures of main diagnostic characters for Senodonia Laporte, Sossor Candèze, and Rostricephalus. Based on our results, we place these genera to Lissominae: Protelaterini, and hence synonymize Senodoniini Schenkling with Protelaterini Schwarz.

scholarly journals Verification of the systematic position of California brome (Bromus carinatus Hook. and Arn., Poaceae), cv. 'Broma', on the basis of analysis of issr markers

2012 ◽  
Vol 65 (3) ◽  
pp. 35-42 ◽  
Author(s):  
Agnieszka Sutkowska
Keyword(s):  
Molecular Markers ◽  
Numerical Analysis ◽  
Morphological Analysis ◽  
Systematic Position ◽  
Issr Markers ◽  
Research Centre ◽  
Closely Related Species ◽  
Agricultural Plant ◽  
Bromus Carinatus ◽  
Issr Molecular Markers

‘Broma’ is a grass cultivar belonging to the species <em>Bromus carinatus</em>. In the Lists of Agricultural Plant Varieties of the Research Centre for Cultivar Testing (COBORU), it is shown as <em>Bromus willdenowii </em>(= <em>B. catharticus</em>, <em>B. unioloides</em>) (List of Agricultural Plant Varieties 1989-2009), whereas already in 1984 Mirek demonstrated on the basis of morphological analysis that this was a different closely related species – <em>B. carinatus</em>. <br /> The aim of the present study was to verify the species affiliation of cv. ‘Broma’. The conducted analysis of ISSR molecular markers included representatives of cv. ‘Broma” as well as of <em>B. carinatus </em>and <em>B. willdenowii</em>. <br />The method used allowed the identification of molecular markers of the above-mentioned taxa. The numerical analysis of the obtained results suggests that cv. ‘Broma’ should be classified in the species <em>B. carinatus</em>, not <em>B. willdenowii</em>.

scholarly journals Redescription of Paradiplozoon hemiculteri (Monogenea, Diplozoidae) from the type host Hemiculter leucisculus, with neotype designation

Parasite ◽  
2018 ◽  
Vol 25 ◽  
pp. 4 ◽  
Author(s):  
Dagmar Jirsová ◽  
Xuejuan Ding ◽  
Kristína Civáňová ◽  
Eliška Jirounková ◽  
Jana Ilgová ◽  
...  
Keyword(s):  
Southern China ◽  
Phylogenetic Analyses ◽  
Posterior Part ◽  
Original Description ◽  
Molecular Data ◽  
The Body ◽  
Type Host ◽  
Hemiculter Leucisculus ◽  
Morphological And Molecular Data ◽  
Median Plate

Paradiplozoon hemiculteri (Ling, 1973), a member of the Diplozoidae, parasitizes the gills of Asian fish. Not only is the type material unavailable for this species, the original description was poor and somewhat conflicting, and adequate molecular data were not available. What is more, the available morphological and molecular data are inconsistent and fluctuate significantly. Here, we present a redescription of P. hemiculteri based on morphological and molecular data from new isolates collected from the type host, the sharpbelly Hemiculter leucisculus (Basilewsky, 1855), captured at the neotype locality (Shaoguan, Guangdong Province, southern China); a neotype for P. hemiculteri was designated from this collection. The length and width of the body, buccal suckers, pharynx, attachment clamps, sickle and the central hook handle were all measured and the shape of the anterior and posterior part of the median plate and anterior and posterior joining sclerites accurately documented. Phylogenetic analyses based on the sequences of the second rDNA internal transcribed spacer (ITS2) indicated that all new samples clustered together and differed clearly from sequences attributed to P. hemiculteri, which are deposited in GenBank. Our results confirm that P. hemiculteri is the only diplozoid that has demonstrably been found on the gills of H. leucisculus to date.

Re-description of the Arctic tardigrade Tenuibiotus voronkovi (Tumanov, 2007 (Eutardigrada; Macrobiotidea), with the first molecular data for the genus

Zootaxa ◽  
2016 ◽  
Vol 4196 (4) ◽  
pp. 498 ◽  
Author(s):  
KRZYSZTOF ZAWIERUCHA ◽  
MAŁGORZATA KOLICKA ◽  
ŁUKASZ KACZMAREK
Keyword(s):  
Original Description ◽  
Molecular Data ◽  
Internal Transcribed Spacers ◽  
The Arctic ◽  
Morphological Description ◽  
28S Rrna ◽  
Morphometric Data ◽  
Additional Material ◽  
Svalbard Archipelago ◽  
5.8S Rdna

Tardigrada is phylum of micrometazoans widely distributed throughout the world, because of old descriptions and insufficient morphometric data, many species currently need revision and re-description. Tenuibiotus voronkovi (Tumanov, 2007) is tardigrade previously only recorded from the Svalbard archipelago. This species’ original description was based on two individuals with destroyed claws on the fourth pair of legs and a lack of complete morphometric data for buccal tube and claws. In this paper, we present a re-description of T. voronkovi, supplementing the original description using the original paratype and additional material from Svalbard: Spitsbergen, Nordaustlandet and Edgeøya. This species is characterised by two macroplacoids and a microplacoid, claws of Tenuibiotus type, dentate lunules under claw IV, and faint granulation on legs I–III and strong granulation on the legs IV. We include a new morphological description with microphotographs, morphometric, and molecular data (including: mitochondrial cytochrome c oxidase subunit I (COI), internal transcribed spacers (ITS1–5.8S rDNA–ITS2), and nuclear ribosome subunits 28S rRNA and 18S rRNA). These are the first published molecular data for the genus Tenuibiotus Pilato and Lisi, 2011, analysis of which indicated an affiliation of Tenuibiotus to the family Macrobiotidae. We found no differences in body size between individuals from different islands (Nordaustlandet and Edgeøya), but did observe variability in the eggs. After revision of the literature and the published figures, we concluded that Dastych’s (1985) report of T. willardi (Pilato, 1976) from Svalbard, was actually T. voronkovi, which has the greater distribution in Svalbard, and other Arctic locations, than previously believed. 

Alpha-taxonomy and phylogeny of African Junoniini butterflies based on morphological data, with an emphasis on genitalia, and COI barcode (Lepidoptera: Nymphalidae)

Zootaxa ◽  
2021 ◽  
Vol 4991 (3) ◽  
pp. 401-433
Author(s):  
TOMASZ W. PYRCZ ◽  
KLAUDIA FLORCZYK ◽  
STEVE COLLINS ◽  
SZABOLCS SÁFIÁN ◽  
OSCAR MAHECHA-J. ◽  
...  
Keyword(s):  
Male Genitalia ◽  
Morphological Analysis ◽  
Cladistic Analysis ◽  
Central Africa ◽  
Molecular Data ◽  
Morphological Data ◽  
East African ◽  
East African Coast ◽  
Afrotropical Region ◽  
Close Relationship

The tribe Junoniini is a predominantly Paleotropical group of the cosmopolitan butterfly subfamily Nymphalinae (Nymphalidae), with highest diversity in the Afrotropical region. Its systematics and relationships are not entirely resolved. Question marks remain concerning the validity of some genera; and the apparently close relationship between the Indo-Australian genus Yoma and the Afrotropical Protogoniomorpha, as evidenced by molecular phylogenies, remains a puzzle. Here, we present a cladistic analysis, based on 42 characters of the male and female genitalia of 41 species of Junoniini belonging to six genera, nearly all of them continental Afrotropical, and 3 species of two Indo-Australian genera Yoma and Rhinopalpa. A ML COI-based tree is produced for 36 species of Afrotropical Junoniini and Yoma. The molecular data are consistent with previous studies. However, morphological analysis does not confirm a close relationship between Protogoniomorpha and Yoma. Despite the evolution of a number of modifications, the male genitalia within all genera and species of the Junoniini share a cohesive build plan, in particular a transformed sacculus, from which Yoma is highly divergent. The position of the genus Kamilla, previously synonymized with Junonia, is discussed. Three East African coast taxa, Junonia elgiva stat. reinst., Protogoniomorpha nebulosa stat. reinst. and Salamis amaniensis stat. reinst., and one from central Africa, Precis silvicola stat. reinst. are raised to species level, based on comparative analysis of their male genitalia.  

Genetic epilepsy with febrile seizures plus

Neurology ◽  
2017 ◽  
Vol 89 (12) ◽  
pp. 1210-1219 ◽  
Author(s):  
Yue-Hua Zhang ◽  
Rosemary Burgess ◽  
Jodie P. Malone ◽  
Georgie C. Glubb ◽  
Katherine L. Helbig ◽  
...  
Keyword(s):  
Genetic Data ◽  
Febrile Seizures ◽  
Original Description ◽  
Molecular Data ◽  
Genetic Determinants ◽  
Genetic Epilepsy ◽  
Phenotypic Spectrum ◽  
Clonic Seizures ◽  
Generalized Epilepsy ◽  
Febrile Seizures Plus

Objective:Following our original description of generalized epilepsy with febrile seizures plus (GEFS+) in 1997, we analyze the phenotypic spectrum in 409 affected individuals in 60 families (31 new families) and expand the GEFS+ spectrum.Methods:We performed detailed electroclinical phenotyping on all available affected family members. Genetic analysis of known GEFS+ genes was carried out where possible. We compared our phenotypic and genetic data to those published in the literature over the last 19 years.Results:We identified new phenotypes within the GEFS+ spectrum: focal seizures without preceding febrile seizures (16/409 [4%]), classic genetic generalized epilepsies (22/409 [5%]), and afebrile generalized tonic-clonic seizures (9/409 [2%]). Febrile seizures remains the most frequent phenotype in GEFS+ (178/409 [44%]), followed by febrile seizures plus (111/409 [27%]). One third (50/163 [31%]) of GEFS+ families tested have a pathogenic variant in a known GEFS+ gene.Conclusion:As 37/409 (9%) affected individuals have focal epilepsies, we suggest that GEFS+ be renamed genetic epilepsy with febrile seizures plus rather than generalized epilepsy with febrile seizures plus. The phenotypic overlap between GEFS+ and the classic generalized epilepsies is considerably greater than first thought. The clinical and molecular data suggest that the 2 major groups of generalized epilepsies share genetic determinants.

scholarly journals Molecular characterization and distribution of Plasmodium matutinum, a common avian malaria parasite

Parasitology ◽  
2017 ◽  
Vol 144 (13) ◽  
pp. 1726-1735 ◽  
Author(s):  
GEDIMINAS VALKIŪNAS ◽  
MIKAS ILGŪNAS ◽  
DOVILĖ BUKAUSKAITĖ ◽  
VAIDAS PALINAUSKAS ◽  
RASA BERNOTIENĖ ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Molecular Characterization ◽  
Malaria Parasite ◽  
Avian Malaria ◽  
Clinical Signs ◽  
Molecular Data ◽  
Infected Blood ◽  
Avian Malaria Parasite ◽  
Thrush Nightingale

SUMMARYSpecies of Plasmodium (Plasmodiidae, Haemosporida) are widespread and cause malaria, which can be severe in avian hosts. Molecular markers are essential to detect and identify parasites, but still absent for many avian malaria and related haemosporidian species. Here, we provide first molecular characterization of Plasmodium matutinum, a common agent of avian malaria. This parasite was isolated from a naturally infected thrush nightingale Luscinia luscinia (Muscicapidae). Fragments of mitochondrial, apicoplast and nuclear genomes were obtained. Domestic canaries Serinus canaria were susceptible after inoculation of infected blood, and the long-lasting light parasitemia developed in two exposed birds. Clinical signs of illness were not reported. Illustrations of blood stages of P. matutinum (pLINN1) are given, and phylogenetic analysis identified the closely related avian Plasmodium species. The phylogeny based on partial cytochrome b (cyt b) sequences suggests that this parasite is most closely related to Plasmodium tejerai (cyt b lineage pSPMAG01), a common malaria parasite of American birds. Both these parasites belong to subgenus Haemamoeba, and their blood stages are similar morphologically, particularly due to marked vacuolization of the cytoplasm in growing erythrocytic meronts. Molecular data show that transmission of P. matutinum (pLINN1) occurs broadly in the Holarctic, and the parasite likely is of cosmopolitan distribution. Passeriform birds and Culex mosquitoes are common hosts. This study provides first molecular markers for detection of P. matutinum.

scholarly journals Taxonomic diversity of Biomphalaria (Planorbidae) in São Paulo state, Brazil

2020 ◽  
Vol 20 (2) ◽  
Author(s):  
Fernanda Pires Ohlweiler ◽  
Thays de Jesus Rossignoli ◽  
Raquel Gardini Sanches Palasio ◽  
Roseli Tuan
Keyword(s):  
Reproductive System ◽  
Morphological Analysis ◽  
Taxonomic Diversity ◽  
Molecular Data ◽  
Cytochrome C Oxidase I ◽  
Morphological Taxonomy ◽  
Tietê River ◽  
Biomphalaria Straminea ◽  
Gene Coi ◽  
Excretory Organs

Abstract: Morphological and molecular identifications were carried out for Biomphalaria occidentalis, Biomphalaria oligoza, Biomphalaria peregrina, Biomphalaria schrammi, Biomphalaria straminea and Biomphalaria tenagophila collected from 55 sites located along the upper basin of Tietê River in the Southeast Region of Brazil. Morphological analysis considered aspects of the shell, mantle, excretory organs and reproductive system. Molecular data included 122 sequences of Cytochrome C Oxidase I gene (COI). Our results showed that some shell characters, as well as other characters related to the mantle and the reproductive system, are fundamental for the identification of the six Biomphalaria species included in this study. The use of DNA barcoding together with morphological taxonomy generated more reliable results, proving to be a very useful approach, even for malacological surveillance services.

Variable expression of molecular markers in juvenile nasopharyngeal angiofibroma

2017 ◽  
Vol 131 (9) ◽  
pp. 752-759 ◽  
Author(s):  
A Mishra ◽  
A Pandey ◽  
S C Mishra
Keyword(s):  
Molecular Markers ◽  
Clinical Characteristics ◽  
Indian Population ◽  
Molecular Data ◽  
Juvenile Nasopharyngeal Angiofibroma ◽  
Molecular Characteristics ◽  
Nasopharyngeal Angiofibroma ◽  
Variable Expression ◽  
Geographical Bias ◽  
Research Questions

AbstractBackground:Molecular categorisation may explain the wide variation in the clinical characteristics of juvenile nasopharyngeal angiofibroma.Methods:Variations in molecular markers in juvenile nasopharyngeal angiofibroma in an Indian population were investigated and compared with global reports.Results:Variable molecular marker expression was demonstrated at the regional and global levels. A wide variation in molecular characteristics is evident. Molecular data have been reported for only 11 countries, indicating a clear geographical bias. Only 58 markers have been studied, and most are yet to be validated.Conclusion:Research into the molecular epidemiology of juvenile nasopharyngeal angiofibroma is still in its infancy. Although the molecular variation is not well understood, data obtained so far have prompted important research questions. Hence, multicentre collaborative molecular studies are needed to establish the aetiopathogenesis and establish molecular surrogates for clinical characteristics.

Genetic diversity analysis of the Greek lentil (Lens culinaris) landrace ‘Eglouvis’ using morphological and molecular markers

2018 ◽  
Vol 16 (5) ◽  
pp. 469-477 ◽  
Author(s):  
Georgios F. Tsanakas ◽  
Photini V. Mylona ◽  
Katerina Koura ◽  
Anthoula Gleridou ◽  
Alexios N. Polidoros
Keyword(s):  
Genetic Diversity ◽  
Molecular Markers ◽  
Genetic Variability ◽  
Morphological Analysis ◽  
Phenotypic Variability ◽  
Market Price ◽  
Genetic Distances ◽  
Reaction Products ◽  
Principal Coordinates Analysis ◽  
Principal Coordinates

AbstractThe Greek lentil landrace ‘Eglouvis’ is cultivated continuously at the Lefkada island for more than 400 years. It has great taste, high nutritional value and high market price. In the present study, we used morphological and molecular markers to estimate genetic diversity within the landrace. Morphological analysis was based on characteristics of the seed. Molecular analysis was performed using simple sequence repeat (SSR) molecular markers in a high-resolution melting (HRM) approach. ‘Samos’ and ‘Demetra’, two of the most widely cultivated commercial lentil varieties in Greece, were used for comparisons. Morphological analysis was performed with 584 seeds randomly selected from a lot. Analysis of seed dimensions and colour distributed the samples in different categories and highlighted the phenotypic variability in ‘Eglouvis’ lentil seeds. Genetic variability was estimated from 91 individual DNA samples with 11 SSR markers using HRM analysis. Genotyping was based upon the shape of the melting curves and the difference plots; all polymerase chain reaction products were also run on agarose gels. Genetic distances of individuals and principal coordinates analysis suggested that ‘Eglouvis’ landrace has a unique genetic background that significantly differs from ‘Samos’ and ‘Demetra’ and no overlapping could be detected. Genetic variability within the ‘Eglouvis’ landrace can be considered in targeted breeding programs as a significant phytogenetic resource of lentils in Greece.

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