On neotypes and nomina nova: commentary on “Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa”, by C.B. Fitzgerald et al. (BMC Genomics (2018) 19:931)

Although there is scientific consensus on most of the major biogeographic regions in the world, the demarcation of the area connecting Southeast Asia with Australia and Oceania remains debated. Two candidate boundaries potentially explain faunistic diversity patterns in the regions: Lydekker’s and Wallace’s lines. The islands in between both ‘lines’ are jointly termed Wallacea, with Sulawesi as the largest landmass. We surveyed Dacini fruit flies (Tephritidae: Dacinae) in Sulawesi between 2016 and 2019 using traps baited with male lures, resulting in 4,517 collected flies. We identified all specimens to species level, which adds 15 new species records to the island, bringing the total number of Dacini species in Sulawesi to 83. The biogeographic affinity of species in the updated checklist reveals a strong connection with former ‘Sunda’ (41% of species); validating Lydekker’s line, but also a high level of endemism (47% of species), confirming the uniqueness of Wallacea as a biogeographic region. We further describe a new species, Bactrocera (Bactrocera) niogreta Doorenweerd, sp. nov. and discuss the taxonomy of several interesting species.

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Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa

BMC Genomics ◽

10.1186/s12864-020-6527-y ◽

2020 ◽

Vol 21 (1) ◽

Cited By ~ 1

Author(s):

Xingya Zhou ◽

Bo Yang ◽

Catherine Stanton ◽

R. Paul Ross ◽

Jianxin Zhao ◽

...

Keyword(s):

New Species ◽

Comparative Analysis ◽

Species Level ◽

Lactobacillus Gasseri ◽

A New Species ◽

Chinese Subjects

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COGNITIVIZATION — THE NEXT STAGE OF INFORMATIZATION OF EDUCATION

Informatics and Education ◽

10.32517/0234-0453-2018-33-9-5-11 ◽

2018 ◽

pp. 5-11

Author(s):

A. S. Christochevskaya ◽

S. A. Christochevsky

Keyword(s):

Comparative Analysis ◽

Learning Resources ◽

Technical Base ◽

Initial Stage ◽

New Knowledge ◽

Good Material ◽

E Learning ◽

New Material ◽

High Level ◽

Paper Method

Informatization of education has been going on for 30 years. During this time, a good material and technical base appeared in schools, there are repositories of e-learning resources to which teachers have access. However, it is difficult to use these e-learning resources due to their too large number and not always high level. It is advisable to introduce a system of reviews and recommendations, to conduct a comparative analysis, as well as to make reviews of resources on a particular subject/topic. In addition, the demand for e-learning resources is affected by the fact that education authorities encourage not so much the use of e-learning resources as their development by the teacher himself. In general, the load on teachers has increased instead of the promised saving of time and effort when using the e-learning resources. At the same time, many e-learning resources are not very effective, since they do not meet the requirements of cognitiveness (they contribute not to learning, but to simple memorization of the material). It is necessary to explore the process of learning new material: this will allow you to create cognitive e-learning resources and other resources that would help you with equal probability to successfully acquire new knowledge for students belonging to different psycho-types. At the initial stage of the study of any subject, it is more expedient to use the usual “paper” method, that is, a textbook and not overload the student’s brain with excessive information. Only when he has mastered the basic provisions, we can turn to e-learning resources, bearing in mind that they must be cognitive, that is, they are aimed at logical perception and rapid intuitive learning, only in this case e-learning resources can be considered effective. The conclusion is formulated that cognitiveness is the next stage of informatization of education after the stage of electronization.

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A comparative analysis between low and high level HoneyPots

10.24086/cocos17.03 ◽

2017 ◽

Author(s):

Rebin Khoshnaw

Keyword(s):

Comparative Analysis ◽

High Level

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OPERATIONS FOR ANEURISM OF THE ABDOMINAL AORTIC DEPARTMENT - RESECTION WITH THE FOLLOWING PROSTHETICS AND ENDOPROSTHETICS: A COMPARATIVE ANALYSIS OF COMPLICATIONS

СИСТЕМНЫЙ АНАЛИЗ И УПРАВЛЕНИЕ В БИОМЕДИЦИНСКИХ СИСТЕМАХ ◽

10.36622/vstu.2020.19.2.007 ◽

2020 ◽

pp. 43-49

Author(s):

Андрей Анатольевич Иванов ◽

Александр Иванович Жданов ◽

Максим Сергеевич Шевелин ◽

Александр Сергеевич Брежнев

Keyword(s):

Comparative Analysis ◽

Postoperative Complications ◽

Statistical Significance ◽

Aortic Aneurysms ◽

Surgical Interventions ◽

Vein Thrombosis ◽

Scientific Hypothesis ◽

Abdominal Aortic ◽

Life Threatening ◽

High Level

В статье представлены данные оригинального исследования по улучшению хирургического лечения аневризм брюшного отдела аорты. С этой целью произведен сравнительный анализ двух альтернативных друг другу операций: 1) резекции аневризмы с последующим протезированием аорты; 2) эндопротезирования аорты. Сформулировано научное предположение о том, что замена «классических» операций резекции аневризмы на «альтернативные» операции эндопротезирования приведет к принципиальному снижению уровня послеоперационных осложнений. В независимых группах пациентов с использованием сравниваемых хирургических вмешательств произведена точная качественная и количественная оценка послеоперационных осложнений: нетромботических - кардиальных, пульмональных, ренальных и тромботических - тромбозов глубоких вен и тромбозов браншей протеза. После реализации исследования было установлено, что замена «классических» операций на «альтернативные» достоверно приводит к принципиальному снижению уровня наиболее жизнеопасных осложнений - кардиальных (острых форм ишемической болезни сердца, нарушений сердечного ритма), пульмональных (пневмоний, тромбоэмболии легочной артерии, респираторного дистресс-синдрома взрослых) и ренальных (острой почечной недостаточности). Некоторое исключение составили менее жизнеопасные тромботические осложнения. Полученные результаты имеют высокий уровень статистической значимости, что позволяет рекомендовать их к рассмотрению к использованию в практике сосудистой хирургии The article presents data from an original study to improve the surgical treatment of abdominal aortic aneurysms. For this purpose, a comparative analysis of two alternate operations was performed: 1) aneurysm resection followed by aortic prosthetics; 2) aortic endoprosthetics. The scientific hypothesis is formulated that the replacement of the «classical» operations of resection of the aneurysm with «alternative» operations of endoprosthetics will lead to a fundamental decrease in the level of postoperative complications. In independent groups of patients using the compared surgical interventions, an accurate qualitative and quantitative assessment of postoperative complications was made: non-thrombotic - cardiac, pulmonary, renal and thrombotic - deep vein thrombosis and prosthetic jaw thrombosis. After the study was completed, it was found that the fundamental replacement of «classical» operations with «alternative» reliably leads to a fundamental decrease in the level of the most life-threatening complications - cardiac (acute forms of coronary heart disease, cardiac arrhythmias), pulmonary (pneumonia, pulmonary thromboembolism, respiratory distress syndrome of adults) and renal (acute renal failure). Some exceptions were less life-threatening thrombotic complications. The results obtained have a high level of statistical significance, which allows us to recommend them for consideration in the practice of vascular surgery

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panRGP: a pangenome-based method to predict genomic islands and explore their diversity

Bioinformatics ◽

10.1093/bioinformatics/btaa792 ◽

2020 ◽

Vol 36 (Supplement_2) ◽

pp. i651-i658 ◽

Cited By ~ 1

Author(s):

Adelme Bazin ◽

Guillaume Gautreau ◽

Claudine Médigue ◽

David Vallenet ◽

Alexandra Calteau

Keyword(s):

Escherichia Coli ◽

Gene Transfer ◽

Horizontal Gene Transfer ◽

Species Level ◽

Genomic Islands ◽

Genome Plasticity ◽

Reference Dataset ◽

Prokaryotic Genomes ◽

Ideal Approach ◽

Genomic Regions

Abstract Motivation Horizontal gene transfer (HGT) is a major source of variability in prokaryotic genomes. Regions of genome plasticity (RGPs) are clusters of genes located in highly variable genomic regions. Most of them arise from HGT and correspond to genomic islands (GIs). The study of those regions at the species level has become increasingly difficult with the data deluge of genomes. To date, no methods are available to identify GIs using hundreds of genomes to explore their diversity. Results We present here the panRGP method that predicts RGPs using pangenome graphs made of all available genomes for a given species. It allows the study of thousands of genomes in order to access the diversity of RGPs and to predict spots of insertions. It gave the best predictions when benchmarked along other GI detection tools against a reference dataset. In addition, we illustrated its use on metagenome assembled genomes by redefining the borders of the leuX tRNA hotspot, a well-studied spot of insertion in Escherichia coli. panRPG is a scalable and reliable tool to predict GIs and spots making it an ideal approach for large comparative studies. Availability and implementation The methods presented in the current work are available through the following software: https://github.com/labgem/PPanGGOLiN. Detailed results and scripts to compute the benchmark metrics are available at https://github.com/axbazin/panrgp_supdata.

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Comparative analysis and phylogenetic investigation of Hong Kong Ilex chloroplast genomes

Scientific Reports ◽

10.1038/s41598-021-84705-9 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Bobby Lim-Ho Kong ◽

Hyun-Seung Park ◽

Tai-Wai David Lau ◽

Zhixiu Lin ◽

Tae-Jin Yang ◽

...

Keyword(s):

Hong Kong ◽

Comparative Analysis ◽

Phylogenetic Relationships ◽

Species Level ◽

The Other ◽

Trna Genes ◽

Protein Coding ◽

Chloroplast Genomes ◽

Plant Group ◽

Ilex Rotunda

AbstractIlex is a monogeneric plant group (containing approximately 600 species) in the Aquifoliaceae family and one of the most commonly used medicinal herbs. However, its taxonomy and phylogenetic relationships at the species level are debatable. Herein, we obtained the complete chloroplast genomes of all 19 Ilex types that are native to Hong Kong. The genomes are conserved in structure, gene content and arrangement. The chloroplast genomes range in size from 157,119 bp in Ilex graciliflora to 158,020 bp in Ilex kwangtungensis. All these genomes contain 125 genes, of which 88 are protein-coding and 37 are tRNA genes. Four highly varied sequences (rps16-trnQ, rpl32-trnL, ndhD-psaC and ycf1) were found. The number of repeats in the Ilex genomes is mostly conserved, but the number of repeating motifs varies. The phylogenetic relationship among the 19 Ilex genomes, together with eight other available genomes in other studies, was investigated. Most of the species could be correctly assigned to the section or even series level, consistent with previous taxonomy, except Ilex rotunda var. microcarpa, Ilex asprella var. tapuensis and Ilex chapaensis. These species were reclassified; I. rotunda was placed in the section Micrococca, while the other two were grouped with the section Pseudoaquifolium. These studies provide a better understanding of Ilex phylogeny and refine its classification.

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Corrigendum to: Lamprothamnium in Australia (Characeae, Charophyceae)

Australian Systematic Botany ◽

10.1071/sb13026_co ◽

2013 ◽

Vol 26 (6) ◽

pp. 475

Author(s):

Michelle T. Casanova

Keyword(s):

New Species ◽

Species Level ◽

Type Material ◽

Review Of The Literature ◽

Comprehensive Review ◽

The Past

Charophytes in the genus Lamprothamnium exhibit a large amount of diversity, particularly in the examples from Australia, although little of that variation has been recognised at species level in the past. The Australian members of the genus are revised here on the basis of extensive new collections, examination of specimens in herbaria and comprehensive review of the literature and available type material. The existing species Lamprothamnium macropogon (A.Braun) Ophel, L. inflatum (Fil. & G.O.Allen ex Fil.) A.García & Karol and L. heraldii A.García & Casanova are retained, eight new species are described (L. australicum Casanova, L. beilbyae Casanova, L. capitatum Casanova, L. compactum Casanova, L. coorongense Casanova, L. diminutum Casanova, L. macroanthum Casanova and L. stipitatum Casanova) and two taxa variously treated at infraspecific rank in Lychnothamnus are transferred to Lamprothamnium at species rank (L. cockajemmyense Casanova, L. tasmanicum (A.Braun) Casanova). Neither L. papulosum (Wallr.) J.Groves nor L. succinctum (A.Braun) R.D.Wood are confirmed for Australia after examination of the type material of these species. Species are distinguished by the arrangement of the gametangia, morphology of the fertile whorls and characteristics of the oospores. Four of these species are dioecious and nine are monoecious, which supports published conjectures concerning the biogeography of charophyte species (Proctor (1980): J. Phycol. 16, 218–233, doi:10.1111/j.1529-8817.1980.tb03023.x).

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New taxa and new records of butterflies from Vietnam (Lepidoptera, Papilionoidea)

Zootaxa ◽

10.11646/zootaxa.5048.4.2 ◽

2021 ◽

Vol 5048 (4) ◽

pp. 486-510

Author(s):

ALEXANDER L. MONASTYRSKII ◽

VU VAN LIEN

Keyword(s):

New Species ◽

New Taxa ◽

New Records ◽

Species Level ◽

New Subspecies ◽

The Status ◽

First Time ◽

A New Species

A new species and eight new subspecies of Papilionoidea discovered in Vietnam between 2002 and 2020 are described and illustrated. The status of two taxa are revised. New taxa include Pieridae: Delias sanaca bidoupa Monastyrskii & Vu subspec. nov. and Talbotia naganum aurelia Monastyrskii & Vu subspec. nov.; Nymphalidae: Abrota ganga pulcheria Monastyrskii & Vu, subspec. nov.; Bassarona recta consonensis Monastyrskii & Vu, subspec. nov.; Pantoporia bieti aurantina Monastyrskii & To subspec. nov.; Ragadia latifasciata cristata Monastyrskii & Vu, subspec. nov.; Ragadia latifasciata crystallina Monastyrskii & Vu, subspec. nov.; Faunis indistincta luctus Monastyrskii & Vu subspec. nov. & Aemona gialaica Monastyrskii, K. Saito & Vu, spec. nov. The taxon infuscata Devyatkin & Monastyrskii, previously described as the subspecies Aemona tonkinensis infuscata, was elevated to the species level, while the taxon critias (Ragadia critias Riley & Godfrey) was reduced to a subspecies. Three Satyrinae species were recorded from Vietnam for the first time: Palaeonympha opalina Butler, 1871; Ypthima motschulskyi Bremer & Grey, 1853; and Ragadia latifasciata Leech, 1891.

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