scholarly journals Phylogenetic positions of “pico-sized” radiolarians from middle layer waters of the tropical Pacific

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Luyan Li ◽  
Kazuyoshi Endo
Keyword(s):  
Water Samples ◽  
Internal Transcribed Spacer ◽  
Sea Water ◽  
Middle Layer ◽  
Gene Sequences ◽  
Central Pacific ◽  
The Family ◽  
Internal Transcribed Spacer Sequences ◽  
Individual Adult ◽  
The Tropical Pacific

AbstractIn order to determine whether truly pico-sized adult radiolarians exist, we compared spumellarian sequences from individual adult samples collected in the central Pacific, with filtered sea water samples of juvenile (5–42 μm) and gamete (0.2–5 μm) sized fractions to see whether the gene sequences are similar or different. Environmental spumellarian-affiliated sequences we sampled were mostly concentrated in samples from 250 to 400 m depth and only appeared in the RAD-III clade, which corresponds to the family Astrosphaeridae (including Arachnosphaera, Astrosphaera, and Cladococcus). None of the same ITS (internal transcribed spacer) sequences were found in both filter membranes of the same sea water samples. Pairwise distances among these environmental spumellarian-affiliated sequences are within or slightly above the range of intra-morphospecific variations. We propose a model to explain our observations based on the hypothesis that the “pico-sized radiolarians” represent gametes of radiolarians of normal size, assuming different sinking speeds of parents and offspring.

Monoglobus pectinilyticus gen. nov., sp. nov., a pectinolytic bacterium isolated from human faeces.

2020 ◽  
Author(s):  
CC Kim ◽  
WJ Kelly ◽  
ML Patchett ◽  
GW Tannock ◽  
Z Jordens ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Sequence Similarity ◽  
Middle Lamella ◽  
Rrna Gene ◽  
Gene Sequences ◽  
16S Rrna Gene Sequences ◽  
Citrus Peel ◽  
Human Faeces ◽  
The Family

© 2017 IUMS. A novel anaerobic pectinolytic bacterium (strain 14T) was isolated from human faeces. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 14T belonged to the family Ruminococcaceae, but was located separately from known clostridial clusters within the taxon. The closest cultured relative of strain 14T was Acetivibrio cellulolyticus (89.7% sequence similarity). Strain 14T shared ~99% sequence similarity with cloned 16S rRNA gene sequences from uncultured bacteria derived from the human gut. Cells were Gram-stain-positive, non-motile cocci approximately 0.6μm in diameter. Strain 14T fermented pectins from citrus peel, apple, and kiwifruit as well as carbohydrates that are constituents of pectins and hemicellulose, such as galacturonic acid, xylose, and arabinose. TEM images of strain 14T, cultured in association with plant tissues, suggested extracellular fibrolytic activity associated with the bacterial cells, forming zones of degradation in the pectin-rich regions of middle lamella. Phylogenetic and phenotypic analysis supported the differentiation of strain 14T as a novel genus in the family Ruminococcaceae. The name Monoglobus pectinilyticus gen. nov., sp. nov. is proposed; the type strain is 14T (JCM 31914T=DSM 104782T).

SITE-SPECIFIC EQUATIONS OF STATE FOR COASTAL SEA AREAS AND INLAND WATER BODIES

2017 ◽  
Author(s):  
Natalia Andrulionis ◽  
Natalia Andrulionis ◽  
Ivan Zavialov ◽  
Ivan Zavialov ◽  
Elena Kovaleva ◽  
...  
Keyword(s):  
Equation Of State ◽  
Black Sea ◽  
Water Samples ◽  
Equations Of State ◽  
Sea Water ◽  
Ionic Composition ◽  
Water Bodies ◽  
Aral Sea ◽  
The Black Sea ◽  
Coastal Sea

This article presents a new method of laboratory density determination and construction equations of state for marine waters with various ionic compositions and salinities was developed. The validation of the method was performed using the Ocean Standard Seawater and the UNESCO thermodynamic equation of state (EOS-80). Density measurements of water samples from the Aral Sea, the Black Sea and the Issyk-Kul Lake were performed using a high-precision laboratory density meter. The obtained results were compared with the density values calculated for the considered water samples by the EOS-80 equation. It was shown that difference in ionic composition between Standard Seawater and the considered water bodies results in significant inaccuracies in determination of water density using the EOS-80 equation. Basing on the laboratory measurements of density under various salinity and temperature values we constructed a new equation of state for the Aral Sea and the Black Sea water samples and estimated errors for their coefficients.

scholarly journals Carbon-14 in the Southern Indian Ocean

Radiocarbon ◽  
1980 ◽  
Vol 22 (3) ◽  
pp. 684-692 ◽  
Author(s):  
Georgette Delibrias
Keyword(s):  
Surface Water ◽  
Indian Ocean ◽  
Water Samples ◽  
Sea Water ◽  
Time Lag ◽  
Vertical Profiles ◽  
Carbon 14 ◽  
Middle Latitudes ◽  
The North ◽  
The Indian Ocean

14C measurements were carried out on sea water samples collected in 1973, in the Indian ocean. The results obtained for 9 vertical profiles between 27° S and 48°S are presented. In surface water, the bomb 14C content is maximum at middle latitudes. A time lag relative to the north hemisphere bomb 14C delivery is apparent. In the more southern latitudes, 14C content remains very low.

Sewage contamination of coastal bathing waters in england and wales A bacteriological and epidemiological study

1959 ◽  
Vol 57 (4) ◽  
pp. 435-472 ◽  
Author(s):  
Keyword(s):  
Water Samples ◽  
Sea Water ◽  
Test Procedure ◽  
Great Majority ◽  
Controlled Study ◽  
England And Wales ◽  
Representative Sampling ◽  
Small Series ◽  
Bathing Waters ◽  
Ranking Order

1. Bacteriological surveys of more than forty popular bathing beaches around the coasts of England and Wales have been made during the past 5 years. The great majority of the beaches studied were subject to contamination with sewage.2. A rough grading of the beaches studied gave a similar ranking order whether the results of the presumptive coliform test or faecal coli counts were used as the basis of grading.3. Grading of beaches was valid only when surveys were carefully planned to ensure representative sampling from the areas on the beaches concerned where bathing actually took place.4. The coliform test as used in the bacteriological examination of drinking waters was the main test procedure used but had certain limitations. Promising results with plate counts on relatively non-inhibitory media were obtained.5. Various salmonella serotypes, notablySalm. paratyphi B, were isolated in small numbers from a high proportion of sea-water samples. The proportion of positive results for salmonella isolation increased from 13·3% in samples with less than 1000 coliform organisms per 100 ml. to 40·1% in samples with over 10,000 coliforms per 100 ml. Comparison of the numbers of salmonellae isolated with what is known of the minimum infective doses of these organisms suggested that very large volumes of sea water would require to be ingested for infection to occur.6. Poliovirus was not isolated from a small series of sea-water samples examined. Because of the very large dilution factor, special concentration procedures would probably be required to isolate this virus from sea water.7. Four cases of paratyphoid fever probably due to bathing were recorded. Surveys of the two associated beaches had given median presumptive coliform counts of more than 10,000 per 100 ml., and both showed gross macroscopic pollution with sewage.8. A statistically controlled study of the bathing histories of 150 poliomyelitis cases in children living permanently by the seaside gave no evidence that bathing had played any part in causing the disease.

Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment

2021 ◽  
Vol 71 (8) ◽  
Author(s):  
Shan Jiang ◽  
Feng-Bai Lian ◽  
You-Yang Sun ◽  
Xiao-Kui Zhang ◽  
Zong-Jun Du
Keyword(s):  
Type Species ◽  
Phylogenetic Analyses ◽  
Rrna Gene ◽  
Gene Sequences ◽  
Unidentified Phospholipid ◽  
Respiratory Quinone ◽  
Content Type ◽  
Link Type ◽  
The Family ◽  
Sequence Similarities

A Gram-stain-negative, rod-shaped and facultatively aerobic bacterial strain, designated F7430T, was isolated from coastal sediment collected at Jingzi Wharf in Weihai, PR China. Cells of strain F7430T were 0.3–0.4 µm wide, 2.0–2.6 µm long, non-flagellated, non-motile and formed pale-beige colonies. Growth was observed at 4–40 °C (optimum, 30 °C), pH 6.0–9.0 (optimum, pH 7.5–8.0) and at NaCl concentrations of 1.0–10.0 % (w/v; optimum, 1.0 %). The sole respiratory quinone of strain F7430T was ubiquinone 8 and the predominant cellular fatty acids were summed feature 8 (C18 : 1  ω7c / C18 : 1  ω6c; 60.7 %), summed feature 3 (C16 : 1  ω7c/C16 : 1  ω6c; 30.2 %) and C15 : 0 iso (13.9 %). The polar lipids of strain F7430T consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, one unidentified phospholipid and three unidentified lipids. Results of 16S rRNA gene sequences analyses indicated that this strain belonged to the family Halieaceae and had high sequence similarities to Parahaliea aestuarii JCM 51547T (95.3 %) and Halioglobus pacificus DSM 27932T (95.2 %) followed by 92.9–95.0 % sequence similarities to other type species within the aforementioned family. The rpoB gene sequences analyses indicated that the novel strain had the highest sequence similarities to Parahaliea aestuarii JCM 51547T (82.2 %) and Parahaliea mediterranea DSM 21924T (82.2 %) followed by 75.2–80.5 % sequence similarities to other type species within this family. Phylogenetic analyses showed that strain F7430T constituted a monophyletic branch clearly separated from the other genera of family Halieaceae . Whole-genome sequencing of strain F7430T revealed a 3.3 Mbp genome size with a DNA G+C content of 52.6 mol%. The genome encoded diverse metabolic pathways including the Entner–Doudoroff pathway, assimilatory sulphate reduction and biosynthesis of dTDP-l-rhamnose. Based on results from the current polyphasic study, strain F7430T is proposed to represent a novel species of a new genus within the family Halieaceae , for which the name Sediminihaliea albiluteola gen. nov., sp. nov. is proposed. The type strain of the type species is F7430T (=KCTC 72873T=MCCC 1H00420T).

scholarly journals Case Report. Internal transcribed spacer sequence based molecular confirmation and drug efficacy assessment against Toxascaris leonina (Linstow, 1909) infection in Asiatic lions (Panthera leo persica)

2017 ◽  
Vol 54 (2) ◽  
pp. 152-156
Author(s):  
A. D. Moudgil ◽  
L. D. Singla ◽  
M. P. Singh
Keyword(s):  
Body Weight ◽  
Internal Transcribed Spacer ◽  
Drug Efficacy ◽  
Extended Period ◽  
Dose Schedule ◽  
Faecal Egg Count ◽  
Efficacy Assessment ◽  
Internal Transcribed Spacer Sequences ◽  
Zoological Park ◽  
Toxascaris Leonina

Summary The eggs recovered during faecal screening of Asiatic lions (kept at MC Zoological Park, Punjab, India) were delineated as Toxascaris leonina eggs based on morphometric and molecular studies (polymerase chain reaction targeting internal transcribed spacer sequences). Therapeutic management with fenbendazole @10 mg/kg body weight, once daily orally for three consecutive days proved ineffective with maximum faecal egg count reduction (FECR) on day 3 post treatments (69.35 %). But, therapeutic intervention with extended period dose schedule (5 consecutive days) with fenbendazole (@10 mg/kg body weight) proved effective and showed a maximum FECR of 95.34 % at day 7 post treatments. But, when ivermectin (@100μg/kg body weight) was given orally on three alternate days, proved effective as FECR of 95.74 % was recorded at day 7 post treatments. Thus, present study highlights the molecular confi rmation of T. leonina and its management using fenbendazole and ivermectin in Asiatic lions.

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