Mycorrhizal Fungi: A Fungal Community at the Interface between Soil and Roots

2007 ◽  
pp. 221-256
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi

Temporal dynamics of mycorrhizal fungal communities and co-associations with grassland plant communities following experimental manipulation of rainfall

2019 ◽  
Author(s):  
Coline Deveautour ◽  
Sally Power ◽  
Kirk Barnett ◽  
Raul Ochoa-Hueso ◽  
Suzanne Donn ◽  
...  
Keyword(s):  
Community Composition ◽  
Plant Community ◽  
Plant Communities ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Temporal Dynamics ◽  
Arbuscular Mycorrhizal ◽  
Fungal Communities ◽  
Plant Responses ◽  
Rainfall Regimes

Climate models project overall a reduction in rainfall amounts and shifts in the timing of rainfall events in mid-latitudes and sub-tropical dry regions, which threatens the productivity and diversity of grasslands. Arbuscular mycorrhizal fungi may help plants to cope with expected changes but may also be impacted by changing rainfall, either via the direct effects of low soil moisture on survival and function or indirectly via changes in the plant community. In an Australian mesic grassland (former pasture) system, we characterised plant and arbuscular mycorrhizal (AM) fungal communities every six months for nearly four years to two altered rainfall regimes: i) ambient, ii) rainfall reduced by 50% relative to ambient over the entire year and iii) total summer rainfall exclusion. Using Illumina sequencing, we assessed the response of AM fungal communities sampled from contrasting rainfall treatments and evaluated whether variation in AM fungal communities was associated with variation in plant community richness and composition. We found that rainfall reduction influenced the fungal communities, with the nature of the response depending on the type of manipulation, but that consistent results were only observed after more than two years of rainfall manipulation. We observed significant co-associations between plant and AM fungal communities on multiple dates. Predictive co-correspondence analyses indicated more support for the hypothesis that fungal community composition influenced plant community composition than vice versa. However, we found no evidence that altered rainfall regimes were leading to distinct co-associations between plants and AM fungi. Overall, our results provide evidence that grassland plant communities are intricately tied to variation in AM fungal communities. However, in this system, plant responses to climate change may not be directly related to impacts of altered rainfall regimes on AM fungal communities. Our study shows that AM fungal communities respond to changes in rainfall but that this effect was not immediate. The AM fungal community may influence the composition of the plant community. However, our results suggest that plant responses to altered rainfall regimes at our site may not be resulting via changes in the AM fungal communities.

scholarly journals Synergistic community responses of plants and arbuscular mycorrhizal fungi to extreme droughts in a cold-temperate grassland

2020 ◽  
Author(s):  
Wei Fu ◽  
Baodong Chen ◽  
Matthias Rillig ◽  
Wang Ma ◽  
Chong Xu ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Community Dynamics ◽  
Environmental Changes ◽  
Environmental Filtering ◽  
Climate Extremes ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Temperate Grassland ◽  
Community Responses

Mutualistic associations between plants and arbuscular mycorrhizal (AM) fungi may have profound influences on their response to climate changes. Existing theories evaluate the effects of interdependency and environmental filtering on plant-AM fungal community dynamics separately; however, abrupt environmental changes such as climate extremes can provoke duo-impacts on the metacommunity simultaneously. Here, we experimentally tested the relevance of plant and AM fungal community responses to extreme drought (chronic or intense) in a cold temperate grassland. Irrespective of drought intensities, plant species richness and productivity responses were significantly and positively correlated with AM fungal richness and also served as best predictors of AM fungal community shifts. Notably, the robustness of this community synergism increased with drought intensity, likely reflecting increased community interdependence. Network analysis showed a key role of Glomerales in AM fungal interaction with plants, suggesting specific plant-AM fungal pairing. Thus, community interdependence may underpin climate change impact on plant-AM fungal diversity patterns in grasslands.

scholarly journals Detection of arbuscular mycorrhizal fungi associated with pecan (Carya illinoinensis) trees by molecular and morphological approaches

MycoKeys ◽  
2018 ◽  
Vol 42 ◽  
pp. 73-88 ◽  
Author(s):  
L. Fernández Bidondo ◽  
R. P. Colombo ◽  
M. Recchi ◽  
V. A. Silvani ◽  
M. Pérgola ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Sequence Similarity ◽  
Arbuscular Mycorrhizal ◽  
Soil Disturbance ◽  
Fungal Species ◽  
Fungal Community Composition ◽  
Molecular Approaches ◽  
Field Samples ◽  
Fungal Specificity

Arbuscular mycorrhizal (AM) fungal community associated with pecan (Caryaillinoinensis) roots and rhizospheric soils was assessed by spore isolation and morphological characterisation and by pyrosequencing of AM molecular markers. The AM fungal community associated with pecan growing in the field, was always more diverse than that associated with pecan growing in containers. This was not observed when AM richness was studied, suggesting that soil disturbance by a reduction in host plant richness leads to a less equitable distribution of AM fungal species, in contrast to natural soils. The chosen primers (AMV4.5F/AMDGR) for pyrosequencing showed high AM fungal specificity. Based on 97% sequence similarity, 49 operational taxonomic units (MOTUs) were obtained and, amongst these, 41 MOTUs corresponded to the Glomeromycotaphylum. The number of obtained AM sequences ranged from 2164, associated with field samples, to 5572 obtained from pecan trap pot culture samples, defining 30 and 29 MOTUs, respectively. Richness estimated by conventional species identification was 6 and 9 AM fungal species in soil and pot samples, respectively. Claroideoglomuslamellosum, Funneliformismosseae and Entrophosporainfrequens were the only taxa detected using both techniques. Predominant sequences in the pecan rhizosphere samples, such as Rhizoglomusirregulare and other less abundant (Dominikiairanica, Dominikiaindica, Sclerocystissinuosa, Paraglomuslaccatum), were detected only by pyrosequencing. Detection of AM fungal species based on spore morphology, in combination with molecular approaches, provides a more comprehensive estimate of fungal community composition.

scholarly journals Responses of Rhizosphere Fungal Communities to the Sewage Sludge Application into the Soil

2019 ◽  
Vol 7 (11) ◽  
pp. 505 ◽  
Author(s):  
Katarína Ondreičková ◽  
Marcela Gubišová ◽  
Michaela Piliarová ◽  
Miroslav Horník ◽  
Pavel Matušinský ◽  
...  
Keyword(s):  
Sewage Sludge ◽  
Fungal Community ◽  
18S Rdna ◽  
Mycorrhizal Fungi ◽  
Fungal Diversity ◽  
Municipal Wastewater ◽  
Environmental Changes ◽  
Community Diversity ◽  
Rdna Sequencing ◽  
Sludge Application

Due to the increasing sewage sludge production in the world and problems with its disposal, an application of sludge to the soil appears to be a suitable solution considering its fertilizer properties and ability to improve the soil physical conditions. On the other hand, the sludge may also contain undesirable and toxic substances. Since soil microorganisms are sensitive to environmental changes, they can be used as indicators of soil quality. In this study, we used sewage sludge (SS) from two municipal wastewater treatment plants (SS-A and SS-B) in the dose of 5 t/ha and 15 t/ha in order to determine possible changes in the fungal community diversity, especially arbuscular mycorrhizal fungi (AMF), in the rhizosphere of Arundo donax L. Rhizosphere samples were collected in summer and autumn for two consecutive years and the fungal diversity was examined using terminal restriction fragment length polymorphism and 18S rDNA sequencing. Fungal alpha diversity was more affected by SS-A than SS-B probably due to the higher heavy metal content. However, based on principal component analysis and ANOSIM, significant changes in overall fungal diversity were not observed. Simultaneously, 18S rDNA sequencing showed that more various fungal taxa were detected in the sample with sewage sludge than in the control. Glomus sp. as a representative of AMF was the most represented. Moreover, Funneliformis in both samples and Rhizophagus in control with Septoglomus in the sludge sample were other representatives of AMF. Our results indicate that the short-term sewage sludge application into the soil does not cause a shift in the fungal community composition.

scholarly journals Biodiversity of Root Endophytic Fungi from Oxyria sinensis Grown in Metal-Polluted and Unpolluted Soils in Yunnan Province, Southwestern China

Plants ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 2731
Author(s):  
Meiyan Zhu ◽  
Yanhua Ding ◽  
Xuejiao Li ◽  
Yuqing Xiao ◽  
Zhiwei Zhao ◽  
...  
Keyword(s):  
Endophytic Fungi ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Toxic Metal ◽  
Arbuscular Mycorrhizal ◽  
Mining Area ◽  
Southwestern China ◽  
Operational Taxonomic Units ◽  
Root Endophytic Fungi ◽  
Soil Zn

Oxyria sinensis adopts a tolerant strategy as a metal excluder to survive toxic metal concentrations. Biodiversity and the endophytic fungal community colonizing the O. sinensis roots were assessed from a mining area (MA) and a neighboring non-mining area (nMA) in southwestern China. All O. sinensis roots formed fully developed dark septate endophytes (DSEs) and arbuscular mycorrhizal fungi (AMF). Total DSE colonization was higher for the MA versus nMA, in contrast to the total AMF colonization in the two sites. The DSE colonization was higher than AMF colonization regardless of the site. Pure-culture data showed that the fungi closely related to Exophiala, Cadophora and Phialophora dominantly colonized the O. sinensis roots. A total of 450 operational taxonomic units (OTUs) were identified showing the presence of a distinct fungal community in MA and nMA, which was shaped by soil physiochemical properties, including soil Zn concentrations and organic matter. We found that O. sinensis accumulates and adapts efficiently to local endophytic fungi to achieve the expansion of its community, including the spontaneously reclaimed DSE. This property may be targeted to achieve its colonization with a pioneer plant for phytoremediation in the restoration of a vegetation cover in a metal-contaminated area.

scholarly journals 406 Plant Diversity Influences Effectiveness of Associated Arbuscular–Mycorrhizal Fungi

HortScience ◽  
2000 ◽  
Vol 35 (3) ◽  
pp. 463A-463
Author(s):  
Rhoda Burrows ◽  
Francis Pfleger
Keyword(s):  
Plant Species ◽  
Plant Diversity ◽  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Fungal Spores ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Schizachyrium Scoparium ◽  
Plant Host ◽  
Little Bluestem

Growing a plant host in association with other plant species (i.e., increasing diversity) changes the composition of the associated arbuscular–mycorrhizal (AM) fungal community. We tested whether this alteration in the fungal community causes significant differences in the growth of Schizachyrium scoparium L. (Little Bluestem, a C4 grass) or Lespedeza capitata L. (Bush clover, a legume). Seedlings were transplanted into pasteurized soil inoculated with soil from monoculture plots of Schizachyrium or Lespedeza, respectively, vs. plots containing one, seven, or 15 additional plant species. Soil washes from a composite of the plots were added to all pots, including non-inoculated controls, to reduce differences in the non-AM microbial communities. Spore counts of the inoculum from Lespedeza plots showed increasing numbers of AM fungal spores and species richness with increasing plant diversity; this was not true with the Schizachyrium plots, possibly because Schizachyrium may be a better host to more species of AM fungi than Lespedeza. Both Schizachyrium and Lespedeza responded to inoculation with increased growth compared to non-inoculated controls. Tissue analyses of both species showed that inoculation increased the percentage of Cu, and lowered the percentage of Mn compared to control plants. Schizachyrium showed no significant differences in growth due to inoculum source (1-, 2-, 8-, or 16-species plots); while Lespedeza showed increases in root and shoot weights with increasing source-plot diversity.

scholarly journals Non-symbiotic soil microbes are more strongly influenced by altered tree biodiversity than arbuscular mycorrhizal fungi during initial forest establishment

2019 ◽  
Vol 95 (10) ◽  
Author(s):  
Jake J Grossman ◽  
Allen J Butterfield ◽  
Jeannine Cavender-Bares ◽  
Sarah E Hobbie ◽  
Peter B Reich ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
High Throughput Sequencing ◽  
Arbuscular Mycorrhizal ◽  
Tree Diversity ◽  
Fungal Communities ◽  
Juniperus Virginiana ◽  
Lipid Fatty Acid ◽  
Neutral Lipid Fatty Acid ◽  
Fungal Abundance

ABSTRACT While the relationship between plant and microbial diversity has been well studied in grasslands, less is known about similar relationships in forests, especially for obligately symbiotic arbuscular mycorrhizal (AM) fungi. To assess the effect of varying tree diversity on microbial alpha- and beta-diversity, we sampled soil from plots in a high-density tree diversity experiment in Minnesota, USA, 3 years after establishment. About 3 of 12 tree species are AM hosts; the other 9 primarily associate with ectomycorrhizal fungi. We used phospho- and neutral lipid fatty acid analysis to characterize the biomass and functional identity of the whole soil bacterial and fungal community and high throughput sequencing to identify the species-level richness and composition of the AM fungal community. We found that plots of differing tree composition had different bacterial and fungal communities; plots with conifers, and especially Juniperus virginiana, had lower densities of several bacterial groups. In contrast, plots with a higher density or diversity of AM hosts showed no sign of greater AM fungal abundance or diversity. Our results indicate that early responses to plant diversity vary considerably across microbial groups, with AM fungal communities potentially requiring longer timescales to respond to changes in host tree diversity.

scholarly journals The Structure of Rhizosphere Fungal Communities of Wild and Domesticated Rice: Changes in Diversity and Co-occurrence Patterns

2021 ◽  
Vol 12 ◽  
Author(s):  
Jingjing Chang ◽  
Yu Sun ◽  
Lei Tian ◽  
Li Ji ◽  
Shasha Luo ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Wild Rice ◽  
Diversity Index ◽  
Alpha Diversity ◽  
Diversity Indices ◽  
Fungal Communities ◽  
Pathogen Invasion ◽  
Rice Rhizosphere ◽  
Soilborne Fungi

The rhizosphere fungal community affects the ability of crops to acquire nutrients and their susceptibility to pathogen invasion. However, the effects of rice domestication on the diversity and interactions of rhizosphere fungal community still remain largely unknown. Here, internal transcribed spacer amplicon sequencing was used to systematically analyze the structure of rhizosphere fungal communities of wild and domesticated rice. The results showed that domestication increased the alpha diversity indices of the rice rhizosphere fungal community. The changes of alpha diversity index may be associated with the enrichment of Acremonium, Lecythophora, and other specific rare taxa in the rhizosphere of domesticated rice. The co-occurrence network showed that the complexity of wild rice rhizosphere fungal community was higher than that of the domesticated rice rhizosphere fungal community. Arbuscular mycorrhizal fungi (AMF) and soilborne fungi were positively and negatively correlated with more fungi in the wild rice rhizosphere, respectively. For restructuring the rhizomicrobial community of domesticated crops, we hypothesize that microbes that hold positive connections with AMF and negative connections with soilborne fungi can be used as potential sources for bio-inoculation. Our findings provide a scientific basis for reshaping the structure of rhizomicrobial community and furthermore create potential for novel intelligent and sustainable agricultural solutions.

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