scholarly journals The many bits of positional information

Development ◽  
2021 ◽  
Vol 148 (2) ◽  
pp. dev176065
Author(s):  
Gašper Tkačik ◽  
Thomas Gregor

ABSTRACTHalf a century after Lewis Wolpert's seminal conceptual advance on how cellular fates distribute in space, we provide a brief historical perspective on how the concept of positional information emerged and influenced the field of developmental biology and beyond. We focus on a modern interpretation of this concept in terms of information theory, largely centered on its application to cell specification in the early Drosophila embryo. We argue that a true physical variable (position) is encoded in local concentrations of patterning molecules, that this mapping is stochastic, and that the processes by which positions and corresponding cell fates are determined based on these concentrations need to take such stochasticity into account. With this approach, we shift the focus from biological mechanisms, molecules, genes and pathways to quantitative systems-level questions: where does positional information reside, how it is transformed and accessed during development, and what fundamental limits it is subject to?

2014 ◽  
Vol 42 (2) ◽  
pp. 332-339 ◽  
Author(s):  
Dmytro S. Lituiev ◽  
Ueli Grossniklaus

The FG (female gametophyte) of flowering plants (angiosperms) is a simple highly polar structure composed of only a few cell types. The FG develops from a single cell through mitotic divisions to generate, depending on the species, four to 16 nuclei in a syncytium. These nuclei are then partitioned into three or four distinct cell types. The mechanisms underlying the specification of the nuclei in the FG has been a focus of research over the last decade. Nevertheless, we are far from understanding the patterning mechanisms that govern cell specification. Although some results were previously interpreted in terms of static positional information, several lines of evidence now show that local interactions are important. In the present article, we revisit the available data on developmental mutants and cell fate markers in the light of theoretical frameworks for biological patterning. We argue that a further dissection of the mechanisms may be impeded by the combinatorial and dynamical nature of developmental cues. However, accounting for these properties of developing systems is necessary to disentangle the diversity of the phenotypic manifestations of the underlying molecular interactions.


PLoS ONE ◽  
2021 ◽  
Vol 16 (8) ◽  
pp. e0244701
Author(s):  
Alex Shlemov ◽  
Theodore Alexandrov ◽  
Nina Golyandina ◽  
David Holloway ◽  
Stefan Baumgartner ◽  
...  

The Bicoid (Bcd) protein is a primary determinant of early anterior-posterior (AP) axis specification in Drosophila embryogenesis. This morphogen is spatially distributed in an anterior-high gradient, and affects particular AP cell fates in a concentration-dependent manner. The early distribution and dynamics of the bicoid (bcd) mRNA, the source for the Bcd protein gradient, is not well understood, leaving a number of open questions for how Bcd positional information develops and is regulated. Confocal microscope images of whole early embryos, stained for bcd mRNA or the Staufen (Stau) protein involved in its transport, were processed to extract quantitative AP intensity profiles at two depths (apical—under the embryo surface but above the nuclear layer; and basal–below the nuclei). Each profile was quantified by a two- (or three-) exponential equation. The parameters of these equations were used to analyze the early developmental dynamics of bcd. Analysis of 1D profiles was compared with 2D intensity surfaces from the same images. This approach reveals strong early changes in bcd and Stau, which appear to be coordinated. We can unambiguously discriminate three stages in early development using the exponential parameters: pre-blastoderm (1–9 cleavage cycle, cc), syncytial blastoderm (10–13 cc) and cellularization (from 14A cc). Key features which differ in this period are how fast the first exponential (anterior component) of the apical profile drops with distance and whether it is higher or lower than the basal first exponential. We can further discriminate early and late embryos within the pre-blastoderm stage, depending on how quickly the anterior exponential drops. This relates to the posterior-wards spread of bcd in the first hour of development. Both bcd and Stau show several redistributions in the head cytoplasm, quite probably related to nuclear activity: first shifting inwards towards the core plasm, forming either protrusions (early pre-blastoderm) or round aggregations (early nuclear cleavage cycles, cc, 13 and 14), then moving to the embryo surface and spreading posteriorly. These movements are seen both with the 2D surface study and the 1D profile analysis. The continued spreading of bcd can be tracked from the time of nuclear layer formation (later pre-blastoderm) to the later syncytial blastoderm stages by the progressive loss of steepness of the apical anterior exponential (for both bcd and Stau). Finally, at the beginning of cc14 (cellularization stage) we see a distinctive flip from the basal anterior gradient being higher to the apical gradient being higher (for both bcd and Stau). Quantitative analysis reveals substantial (and correlated) bcd and Stau redistributions during early development, supporting that the distribution and dynamics of bcd mRNA are key factors in the formation and maintenance of the Bcd protein morphogenetic gradient. This analysis reveals the complex and dynamic nature of bcd redistribution, particularly in the head cytoplasm. These resemble observations in oogenesis; their role and significance have yet to be clarified. The observed co-localization during redistribution of bcd and Stau may indicate the involvement of active transport.


EvoDevo ◽  
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Supanat Phuangphong ◽  
Jumpei Tsunoda ◽  
Hiroshi Wada ◽  
Yoshiaki Morino

Abstract Background Despite the conserved pattern of the cell-fate map among spiralians, bivalves display several modified characteristics during their early development, including early specification of the D blastomere by the cytoplasmic content, as well as the distinctive fate of the 2d blastomere. However, it is unclear what changes in gene regulatory mechanisms led to such changes in cell specification patterns. Spiralian-TALE (SPILE) genes are a group of spiralian-specific transcription factors that play a role in specifying blastomere cell fates during early development in limpets. We hypothesised that the expansion of SPILE gene repertoires influenced the evolution of the specification pattern of blastomere cell fates. Results We performed a transcriptome analysis of early development in the purplish bifurcate mussel and identified 13 SPILE genes. Phylogenetic analysis of the SPILE gene in molluscs suggested that duplications of SPILE genes occurred in the bivalve lineage. We examined the expression patterns of the SPILE gene in mussels and found that some SPILE genes were expressed in quartet-specific patterns, as observed in limpets. Furthermore, we found that several SPILE genes that had undergone gene duplication were specifically expressed in the D quadrant, C and D quadrants or the 2d blastomere. These expression patterns were distinct from the expression patterns of SPILE in their limpet counterparts. Conclusions These results suggest that, in addition to their ancestral role in quartet specification, certain SPILE genes in mussels contribute to the specification of the C and D quadrants. We suggest that the expansion of SPILE genes in the bivalve lineage contributed to the evolution of a unique cell fate specification pattern in bivalves.


MANUSYA ◽  
2015 ◽  
Vol 18 (2) ◽  
pp. 1-27
Author(s):  
Chanyaporn Chawla

In Chinese linguistics, there has been a long-term interest in the many uses of 有 yǒu. However, a number of these studies limit the functions of 有 yǒu only to a particular period (i.e. the Archaic or Modern period). Moreover, explanations as to why 有 yǒu lost its dominance and was substituted by other words is rarely given. Thus, this paper will synthesize the key interpretations on the variety of functions of 有 yǒu during their development from the Archaic to Modern Chinese periods, and provide explanations for its semantic and syntactic characteristics. In addition, this paper also supports Hopper and Traugott (2003)’s view that during the process of grammaticalization, a content word can shift its function to be a grammatical one.


2020 ◽  
Vol 44 (6) ◽  
pp. 368-372
Author(s):  
David Boone

Fifty years ago, the International Society for Prosthetics and Orthotics was founded in recognition that this unique niche in rehabilitation would benefit from multidisciplinary interactions between specialists in engineering, therapy, and medicine.Since then, field evolved from having a craft orientation toward a technology and clinical specialty. This anniversary provides an opportunity to look back on advances in prosthetics and orthotics, and the clear impact they have had on changing the skills needed by the prosthetist/orthotist as new technology and techniques have emerged. The balance has clearly shifted from mechanical skills to clinical care. The training and skills of the prosthetist/orthotist remain unique and valued in the rehabilitation team, and the primary motivation remains the same as it has been since the creation of the International Society for Prosthetics and Orthotics: the application of external devices where they are suitable to address the many varied needs of persons with disability. This historical perspective puts into context why and how the profession has changed, while also reinforcing that it is the goals set for restoring patient functions that best defines what it is to be a prosthetist/orthotist, not the means we use.


Development ◽  
1999 ◽  
Vol 126 (15) ◽  
pp. 3303-3312 ◽  
Author(s):  
Q. Ch'ng ◽  
C. Kenyon

Hox genes pattern the fates of the ventral ectodermal Pn.p cells that lie along the anteroposterior (A/P) body axis of C. elegans. In these cells, the Hox genes are expressed in sequential overlapping domains where they control the ability of each Pn.p cell to fuse with the surrounding syncytial epidermis. The activities of Hox proteins are sex-specific in this tissue, resulting in sex-specific patterns of cell fusion: in hermaphrodites, the mid-body cells remain unfused, whereas in males, alternating domains of syncytial and unfused cells develop. We have found that the gene egl-27, which encodes a C. elegans homologue of a chromatin regulatory factor, specifies these patterns by regulating both Hox gene expression and Hox protein function. In egl-27 mutants, the expression domains of Hox genes in these cells are shifted posteriorly, suggesting that egl-27 influences A/P positional information. In addition, egl-27 controls Hox protein function in the Pn.p cells in two ways: in hermaphrodites it inhibits MAB-5 activity, whereas in males it permits a combinatorial interaction between LIN-39 and MAB-5. Thus, by selectively modifying the activities of Hox proteins, egl-27 elaborates a simple Hox expression pattern into complex patterns of cell fates. Taken together, these results implicate egl-27 in the diversification of cell fates along the A/P axis and suggest that chromatin reorganization is necessary for controlling Hox gene expression and Hox protein function.


2017 ◽  
Vol 61 (4) ◽  
pp. 401-413
Author(s):  
Theodore F. Sheckels

The concept of genre is an important one in rhetorical criticism. Important work has been done on presidential genres as well as more general ones such as the jeremiad and the apologia. In this vein is work on certain genres that recur at the many political party conventions. If one adopts an historical perspective, there are, from early-on, many genres—some explored by scholars, some not: the welcome address, the keynote address, the nominating and seconding speeches, and the vice presidential and presidential nomination acceptance speeches. There are also, more recently, addresses by former presidents, vanquished candidates, and—since the 1990s—prospective first spouses. This essay focuses on just one of these genres, the keynote. I argue that the genre is an important one, one that performs both important rhetorical and political work. Based on the 2016 party conventions, the genre is very much an endangered species of political communication, portending rhetorical problems for the nation’s two parties.


2019 ◽  
Vol 116 (52) ◽  
pp. 26187-26194 ◽  
Author(s):  
Thomas Zhihao Luo ◽  
John H. R. Maunsell

Attention is a common but highly complex term associated with a large number of distinct behavioral and perceptual phenomena. In the brain, attention-related changes in neuronal activity are observed in widespread structures. The many distinct behavioral and neuronal phenomena related to attention suggest that it might be subdivided into components corresponding to distinct biological mechanisms. Recent neurophysiological studies in monkeys have isolated behavioral changes related to attention along the 2 indices of signal detection theory and found that these 2 behavioral changes are associated with distinct neuronal changes in different brain areas. These results support the view that attention is made up of distinct neurobiological mechanisms.


2013 ◽  
Vol 785-786 ◽  
pp. 1189-1192
Author(s):  
Yong Feng Shang

This chapter describes how the overall configuration of the aircraft is decided from the many options available to the designers. From a brief historical perspective the chapter then looks at the unconventional layouts that have been considered in the recent past. Although these have not yet found favor with designers it is worth keeping them in mind as conditions and constraints may change in the future. Such changes could make current layouts less attractive or even not feasible. New designers should start a new project with a completely open mind and this means a careful consideration of all configurations particularly in a historical context.


Blood ◽  
2008 ◽  
Vol 111 (1) ◽  
pp. 16-24 ◽  
Author(s):  
Ernest Beutler

Glucose-6-phosphate dehydrogenase deficiency serves as a prototype of the many human enzyme deficiencies that are now known. Since its discovery more than 50 years ago, the high prevalence of the defect and the easy accessibility of the cells that manifest it have made it a favorite tool of biochemists, epidemiologists, geneticists, and molecular biologists as well as clinicians. In this brief historical review, we trace the discovery of this defect, its clinical manifestations, detection, population genetics, and molecular biology.


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