scholarly journals Ketahanan Berbagai Kultivar Padi Lokal terhadap Penyakit Hawar Daun Bakteri

2016 ◽  
Vol 12 (3) ◽  
pp. 89
Author(s):  
Andi Khaeruni ◽  
Erwin Najamuddin ◽  
Teguh Wijayanto ◽  
Syair Syair

Bacterial leaf blight disease caused by Xanthomonas oryzae pv. oryzae is an important rice disease in Indonesia, including in South East Sulawesi. The use of resistant varieties is one of the effective and environmentally friendly control strategies to suppress the disease. This study aimed to determine the level of resistance of some local rice varieties of South and Southeast Sulawesi against Xanthomonas oryzae pv. oryzae pathotypes IV, VIII and X. The study was conducted in a screen house involving 3 bacterial pathotypes and 11 local rice cultivars. Shearing method was used for inoculation of bacteria to leaf on vegetative and generative phases. Disease incidences were measured 3 weeks after inoculation, and the data was further used to determine the level of resistance of the tested rice cultivars. The results showed that incubation period of the disease was longer on Kelaca cultivar compared to other cultivars. On vegetative phase, this cultivar showed moderate resistant to pathotypes IV and X, and highly resistant to patotype VIII, whereas on the generative phase it showed moderate resistant to pathotypes IV and VII, and highly resistant to pathotype X. Therefore, Kelaca cultivar can be recommended for endemic areas of leaf blight in South and Southeast Sulawesi

2016 ◽  
Vol 15 (2) ◽  
pp. 152 ◽  
Author(s):  
Wira Hadianto ◽  
Lukman Hakim ◽  
Bakhtiar .

The resistance rice genotypes against bacterial leaf blight (Xanthomonas oryzae pv. oryzae). The research was conducted to analyze genotypes of rice that were resistant to bacterial leaf blight (BLB) disease. The experiment was conducted at the screen house of Faculty of Agriculture, Syiah Kuala University, Banda Aceh from February to October 2014. This experiment was arranged in randomized complete block design with 73 treatments and 3 replications. IR-BB27 and IR-64 were used as control of resistant and susceptible varieties to BLB, respectively. The result showed that the bacterial isolates tested were virulent. The longest incubation period found in Limboto, Inpari 10, Situ Patenggang, Sirendeh Semantuk Wayla, Tamboen, Sepasie, Bontok and Arias. Genotypes Inpari 1, Limboto, Tuwoti, Inpari 10, Lekat Rambot Linuet, Rom Mokot, Paki Gajah, Tamboen, Bo 100, Sipasie, Bo Minyek, Bontok, Sirendeh Semantuk Wayla and Sambei showed resistance reaction to bacterial leaf blight disease.


2019 ◽  
Vol 1 (3) ◽  
pp. 240-248
Author(s):  
Tung Hoang ◽  
Ton Huu Phan ◽  
Hai Van Tong ◽  
Trung Nam Tran

Most rice growing areas frequently encounter the bacterial leaf blight, Xanthomonas oryzae pv oryzae (Xoo). To prevent the disease, development of resistant varieties is considered to be the most economical and environmentally safe solution. In this study, three PCR-based markers, Npb181, RM122, and P3, were used for the identification of the genes Xa4, xa5, and Xa7, respectively, from 56 local black glutinous rice accessions of Vietnam. Phenotypic screening of the accessions for resistance to 10 Xoo strains of North Vietnam, along with IRBB4, IRBB5, and IRBB7 as resistant controls and IR24 as a susceptible control were carried out in the 2016 Autumn season. 19 accessions containing the resistant genes were found, of these, 6 accessions carried Xa4 gene, 6 accessions carried xa5 gene, and 11 accessions carried Xa7 gene. Three accessions carried two resistance genes, viz. Nep do (Xa4 and Xa7), Pau cam (xa5 and Xa7), and Pe lon cam (Xa4 and xa5). Accessions with xa5 and Xa7 alone or with a combination of two genes (Xa4 and xa5, Xa4 and Xa7, or xa5 and Xa7) were resistantto 8-9 Xoo strains (8-9R/0M/1-2S). Accessions containing Xa4 showed resistance to 5-6 strains of Xoo (5-6R/0M/4-5S). Xoo strain No1 (HUA01043) showed the lowest virulence, infecting only 14 accessions (42R/4M/14S). Strains No3 (HUA 0020131-2), No4 (HUA202361), No5 (HUA20212), and No8 (HUA 020083) showed highest virulence, and they each infected more than 40 accessions with 19R/0M/41S, 20R/0M/40S, 16R/4M/40S, and 20R/0M/40S, respectively. These strains can even infect some accessions containing effective resistant genes (Xa4 or Xa7).


2017 ◽  
Vol 36 (2) ◽  
pp. 99
Author(s):  
Dini Yuliani ◽  
Wage Ratna Rohaeni

<p>Bacterial leaf blight (BLB) disease is one of the obstacles in increasing of rice production. The use of resistant varieties is an effective and easy to implement for farmers. This paper discusses the heritability and source of resistance genes of rice varieties against the BLB disease and strategies to maintain the durability of resistant varieties as one of the control efforts through plant breeding to supports the increasing of rice production. Assembling and development of resistant varieties play an important role in controlling BLB disease because it has a genetic resistance<br />mechanism that can be inherited to progeny level. Varieties with vertical resistance are easily broken by pathogens, so it is necessary to assembling of varieties with horizontal resistance. To obtain the resistant progeny to BLB disease in the assembly of varieties, the position of the resistant varieties should be played as a female parent that has a high specific joining power. The nature of resistance to BLB is from a population whose parent genes are derived from multiple cross results has higher heritability. The populations derived from a double-cross have multigenic resistance and have the potential to produce recombinant individuals resistant for prolonged periods (durable). The availability of durable resistant varieties become a key requirement in sustainable BLB disease control. This matter can be done by improving the resistance of varieties through the assembling of varieties with various sources of resistance such as wild rice, local rice, and introduced rice.</p><p>Keywords: Rice, varieties, resistance, bacterial leaf blight, durability, heritability</p><p> </p><p><strong>ABSTRAK</strong></p><p>Penyakit hawar daun bakteri (HDB) merupakan salah satu kendala dalam peningkatan produksi padi. Penggunaan varietas tahan merupakan cara pengendalian yang efektif dan mudah diterapkan petani. Tulisan ini membahas heritabilitas dan sumber gen ketahanan varietas padi terhadap penyakit HDB dan strategi mempertahankan durabilitas varietas tahan sebagai salah satu upaya pengendalian melalui pemuliaan tanaman mendukung upaya peningkatan produksi padi. Perakitan dan pengembangan varietas tahan berperan penting mengendalikan penyakit HDB, karena memiliki mekanisme ketahanan genetik yang dapat diwariskan kepada keturunannya. Varietas dengan ketahanan vertikal mudah dipatahkan oleh patogen, sehingga perlu upaya perakitan varietas dengan ketahanan horizontal. Untuk memperoleh keturunan tanaman padi yang tahan terhadap penyakit HDB dalam perakitan varietas, posisi tetua tahan sebaiknya diperankan sebagai tetua betina yang memiliki daya gabung khusus yang tinggi. Sifat ketahanan HDB dari populasi tetua yang mengandung gen dari hasil silang ganda memilliki heritabilitas lebih tinggi. Populasi turunan dari silang ganda memiliki ketahanan multigenik dan berpeluang menghasilkan individu rekombinan tahan untuk periode yang lama (durable). Ketersediaan varietas tahan yang durable menjadi syarat utama dalam pengendalian penyakit HDB secara berkelanjutan. Hal ini dapat dilakukan dengan perbaikan ketahanan varietas melalui perakitan varietas dengan berbagai sumber ketahanan, di antaranya padi liar, padi lokal, dan padi introduksi.</p><p>Kata kunci: Padi, varietas, ketahanan, hawar daun bakteri, durabilitas, heritabilitas</p>


2020 ◽  
Vol 24 (1) ◽  
pp. 35
Author(s):  
Fatimah Fatimah ◽  
Tasliah Tasliah ◽  
Joko Prasetiyono ◽  
Mahrup Mahrup

Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is a serious disease in rice plants worldwide. Yield losses caused by Xoo can be as high as 50% in some parts of Asia. Xa7 gene can potentially confer a broad resistance to BLB. Evaluation of disease resistance characteristics in early breeding generations of rice is important to develop varieties with better resistance. This study reports the evaluation of 167 Indonesian rice germplasms against three BLB isolates/pathotypes in a green house setting and the genotyping of 56 Indonesian rice germplasm using 12 SSR markers linked to Xa7 BLB resistance gene. The majority of the indigenous rice germplasms was found to be susceptible to three BLB isolates/pathotypes tested. Sate Liko from Bantul, Yogyakarta, Horeg from Cirebon, West Java and Sijem from Malang, East Java revealed consistent resistance to three isolates/pathotypes tested based on BLB evaluation in a greenhouse, UPGMA analysis, and genotyping. Pathotype XII displayed more virulence to Indonesian rice varieties tested compared to pathotypes VI and V. The association analysis using the General linear model identified six markers associated with BLB resistance and two markers were highly associated (RM20589 and RM20590). This information will be useful for future studies of BLB resistance in rice plants.


2015 ◽  
Vol 34 (2) ◽  
pp. 113
Author(s):  
Sudir Sudir ◽  
Dini Yuliani ◽  
Lalu Wirajaswadi

<p>A study was carried out to identify the composition and distribution of Xanthomonas oryzae pv. oryzae (Xoo) pathotypes on rice crop in West Nusa Tenggara, during the 2012 planting season. Three activities were conducted, namely collection of rice leaf samples from the fields, isolation of Xoo from the leaf samples at the laboratory, and testing pathotypes of Xoo at the screen house. Rice leaves showing typical bacterial leaf blight (BLB) symptom were collected from various farmers’ fields. The samples were detached and put into paper envelopes, and were taken to the laboratory for isolation of Xoo, at the Laboratory of Pythopathology of Indonesian Center for Rice Research (ICRR), Sukamandi. Pathotype testing was done in the ICRR screen house by inoculating the leaves of five differential rice varieties using inocula of the Xoo isolates. Resistance of the rice differential varieties was determined based on the BLB disease severity. Inoculated plant with disease severity ≤11% was considered resistant (R) and disease severity &gt;11% was susceptible (S). From the 240 samples of rice leaf infected with BLB collected from West Nusa Tenggara, 232 Xoo isolates were obtained. The Xoo pathotype identification showed that pathotype IV was the most dominant in West Nusa Tenggara during the 2012 planting season, numbering 118 isolates or 51.0% out of the total isolates, followed by pathotype VIII (67 isolates or 29.0%), and pathotype III (47 isolates or 20.0%).</p>


Plant Disease ◽  
2000 ◽  
Vol 84 (4) ◽  
pp. 465-469 ◽  
Author(s):  
J. Yashitola ◽  
A. P. K. Reddy ◽  
Ramesh V. Sonti

Xanthomonas oryzae pv. oryzae causes bacterial leaf blight, a serious disease of rice. We have collected leaf blight-affected samples from wild rice (Oryza nivara) plants growing naturally at 22 locations in five revenue districts (Nalgonda, Ranga Reddy, Medak, Nizamabad, and Adilabad) in the Telangana Region of Andhra Pradesh, India. Pathotype analysis on a set of differential rice cultivars and DNA fingerprinting with two multilocus restriction fragment length polymorphism probes indicated that the X. oryzae pv. oryzae strains from the O. nivara plants belonged to a pathotype and lineage previously widely distributed among cultivated rice in India. This suggests that the lineage may be native to wild rice and may have been transferred subsequently to cultivated rice plants.


2016 ◽  
Vol 20 (2) ◽  
pp. 65 ◽  
Author(s):  
Dini Yuliani ◽  
Rina H. Wening ◽  
NFN Sudir

<p>Seleksi Ketahanan Aksesi Plasma Nutfah Padi terhadap Hawar Daun Bakteri. Dini Yuliani, Rina H. Wening, dan Sudir. Usaha budi daya tanaman padi di Indonesia selalu dihadapkan pada berbagai kendala, di antaranya serangan penyakit hawar daun bakteri (HDB) yang disebabkan oleh bakteri Xanthomonas oryzae pv. oryzae (Xoo). Pengendalian penyakit HDB dengan varietas tahan merupakan salah satu teknik yang murah dan mudah dilakukan oleh petani padi. Aksesi plasma nutfah sebagai sumber tetua untuk perakitan varietas tahan perlu diketahui reaksi ketahanannya terhadap penyakit HDB. Penelitian ini bertujuan untuk menyeleksi ketahanan aksesi plasma nutfah terhadap penyakit HDB patotipe III, IV, dan VIII. Penelitian dilaksanakan di Kebun Percobaan Balai Besar Penelitian Tanaman Padi di Sukamandi, Subang, Jawa Barat pada Musim Hujan 2012/2013 dan Musim Kemarau 2013 dengan Rancangan Acak Terpisah. Petak utama adalah tiga patotipe Xoo, yaitu patotipe III, IV, dan VIII. Sedangkan anak petak adalah materi yang diuji, yaitu 20 aksesi plasma nutfah dan tiga varietas pembanding. Sebanyak 20 rumpun tanaman per petak diinokulasi Xoo dengan metode pengguntingan. Inokulasi dilakukan pada saat pertanaman menjelang stadium primordia. Ujung-ujung daun digunting sepanjang kira-kira 10 cm dari ujung daun dengan gunting inokulasi yang berisi suspensi bakteri Xoo umur 48 jam dengan kepekatan 108 cfu. Pengamatan keparahan penyakit HDB dilakukan dengan mengukur panjang gejala terpanjang pada umur dua, tiga, dan empat minggu setelah inokulasi. Hasil pengujian ketahanan terhadap HDB patotipe III, IV, dan VIII diperoleh tiga aksesi plasma nutfah yang berasal dari galur isogenik menunjukkan keparahan penyakit HDB tidak berbeda nyata dengan varietas pembanding tahan Angke pada dua musim tanam. Galur isogenik tersebut, yaitu IRBB 55, IRBB 60, dan IRBB 61. Ketiga galur isogenik tersebut dapat dijadikan tetua tahan dalam perakitan varietas unggul baru tahan HDB.</p><p> </p><p><strong>Abstrak</strong></p><p>Rice cultivation in Indonesia has been faced with many obstacles, including the attack of bacterial leaf blight (BLB) that caused by bacteria Xanthomonas oryzae pv. oryzae (Xoo). Resistant variety was considered as the cheap technique to control BLB disease and could be used by rice farmers. Germplasm accessions as a source to build resistant varieties must be known their resistance to BLB disease. This study aimed at selecting the resistance germplasm accessions to BLB pathotype III, IV, and VIII. The study was conducted at the Experimental Station of the Indonesian Center for Rice Research in Sukamandi, Subang, West Java at wet season 2012/2013 and dry season 2013 with Split Plot Design. The main plot was three pathotypes Xoo i.e. pathotype III, IV, and VIII. The subplot was 20 germplasm accessions and three check varieties. A total of 20 hills of rice plants per plot were inoculated by Xoo with cutting method. Inoculation was conducted before the primordia stage. Inoculation of bacterial suspension containing Xoo aged 48 hours at a concentration of 108 cfu. Observations BLB disease severity was done by measuring the longest length of symptoms at the age of two, three, and four weeks after inoculation (WAI). The result showed that three germplasm accessions from near isogenic lines were not significantly different with the check varieties (Angke) in their resistance to Xoo pathotype III, IV, and VIII in two cropping seasons. The isogenic lines were IRBB 55, IRBB 60, and IRBB 61 can be used in the assembly of resistant new varieties to BLB.</p>


2020 ◽  
Vol 39 (1) ◽  
pp. 11
Author(s):  
Fatimah Fatimah ◽  
Joko Prasetiyono

<p>Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv oryzae (Xoo) is an important bacterial disease and very destructive to rice plant. BLB decreased rice production from 20%-30% up to 80%. Host-plant resistance is a cost-effective and environmentally safe approach to reduce yield loss. However the development of new rice variety by conventional selection would take several years. The genetic improvement in rice production considered as a vital program in order to ensure national food security. The availability of corresponding molecular marker makes it more precision and efficient by reducing the time required for selection. This present article highlights the molecular approach in breeding for BLB disease resistant rice varieties. In detail, it will be discussed the application of molecular marker assisted backcrossing and pyramiding gene resistance offered breeders to accelerate the rice breeding program for resistance to BLB. The pyramiding of three resistance BLB genes (xa5, Xa7, and Xa21and one gene (Xa4) as a background into two elite indica rice varieties, Ciherang and Inpari 13, was introduced successfully. The combining of conventional breeding, marker assisted backcrossing, disease evaluation, agronomic performance and yield has led the significant resistance of pyramid lines to Xoo Race III, IV and VIII in vegetative and generative phase while their yield potential was maintained (6-7 ton/ha). The current status of Ciherang-HDB and Inpari 13-HDB pyramid lines is the production of nucleoseeds and breeder seeds. This broad spectrum and durable resistance characteristic may help in controlling BLB disease in different region of Indonesia and it will facilitate the rice self-sustainability program.</p><p>Keywords: Rice, gene pyramiding, plant breeding, molecular marker.</p><p> </p><p><strong>Abstrak</strong></p><p>Penyakit hawar daun bakteri (HDB) yang disebabkan oleh Xanthomonas oryzae pv oryzae (Xoo) merupakan penyakit penting pada tanaman padi karena dapat menurunkan produksi padi rata-rata 20-30% bahkan dapat mencapai 80%. Penggunaan varietas tahan merupakan cara pengendalian yang paling efektif, ramah lingkungan, dan mudah dilakukan. Namun pengembangan varietas unggul baru melalui seleksi konvensional memerlukan waktu lebih lama. Perbaikan varietas padi perlu terus dikembangkan dalam mendukung ketahanan pangan dan kemandirian pangan nasional. Tersedianya marka molekuler membantu proses pemuliaan tanaman menjadi lebih presisi dan lebih efisien sehingga mengurangi waktu seleksi pada tanaman progeni. Tulisan ini memfokuskan pendekatan molekuler dalam pemuliaan varietas tahan penyakit HDB melalui piramida gen ketahanan untuk mempercepat progam pemuliaan padi tahan penyakit HDB. Kegiatan menggabungkan tiga gen ketahanan (xa5, Xa7, dan Xa21) dan satu gen (Xa4) sebagai background ke dalam padi varietas Ciherang dan Inpari-13 telah berhasil dilakukan. Melalui penggabungan beberapa pendekatan yaitu pemuliaan konvensional dan silang balik berbantu marka, evaluasi penyakit dan keragaan agronomi serta komponen hasil telah menunjukkan peningkatan ketahanan yang nyata pada galur-galur piramida Ciherang HDB dan Inpari-13 HDB pada tiga ras Xoo (Ras III, IV, dan VIII), baik pada fase vegetatif maupun generatif dengan potensi hasil tidak berbeda nyata dengan tetuanya (6-7 t/ha). Saat ini sudah diproduksi benih inti (NS) dan benih penjenis (BS) galur-galur piramida Ciherang HDB dan Inpari-13 HDB. Dengan demikian, galur-galur piramida memiliki spektrum yang luas dan mampu bertahan dalam jangka waktu lama sehingga dapat mengontrol penyakit HDB di berbagai wilayah Indonesia dan mendukung target pemerintah untuk mempertahankan swasembada beras secara berkelanjutan.</p><p>Kata kunci: Padi, piramida gen, pemuliaan tanaman, marka molekuler.<br /><br /></p><p> </p>


PLoS ONE ◽  
2021 ◽  
Vol 16 (9) ◽  
pp. e0255470
Author(s):  
Phuong Nguyen Duy ◽  
Dai Tran Lan ◽  
Hang Pham Thu ◽  
Huong Phung Thi Thu ◽  
Ha Nguyen Thanh ◽  
...  

TBR225 is one of the most popular commercial rice varieties in Northern Vietnam. However, this variety is highly susceptible to bacterial leaf blight (BLB), a disease caused by Xanthomonas oryzae pv. oryzae (Xoo) which can lead to important yield losses. OsSWEET14 belongs to the SWEET gene family that encodes sugar transporters. Together with other Clade III members, it behaves as a susceptibility (S) gene whose induction by Asian Xoo Transcription-Activator-Like Effectors (TALEs) is absolutely necessary for disease. In this study, we sought to introduce BLB resistance in the TBR225 elite variety. First, two Vietnamese Xoo strains were shown to up-regulate OsSWEET14 upon TBR225 infection. To investigate if this induction is connected with disease susceptibility, nine TBR225 mutant lines with mutations in the AvrXa7, PthXo3 or TalF TALEs DNA target sequences of the OsSWEET14 promoter were obtained using the CRISPR/Cas9 editing system. Genotyping analysis of T0 and T1 individuals showed that mutations were stably inherited. None of the examined agronomic traits of three transgene-free T2 edited lines were significantly different from those of wild-type TBR225. Importantly, one of these T2 lines, harboring the largest homozygous 6-bp deletion, displayed decreased OsSWEET14 expression as well as a significantly reduced susceptibility to a Vietnamese Xoo strains and complete resistance to another one. Our findings indicate that CRISPR/Cas9 editing conferred an improved BLB resistance to a Vietnamese commercial elite rice variety.


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