<p>Growing plants affect soil moisture, mineral N and organic C (C<sub>org</sub>) availability in soil and may thus play an important role in regulating denitrification. The availability of the main substrates for denitrification (C<sub>org</sub> and NO<sub>3</sub><sup>-</sup>) is controlled by root activity and higher denitrification activity in rhizosphere soils has been reported. We hypothesized that (I) plant N uptake governs NO<sub>3</sub><sup>-</sup> availability for denitrification leading to increased N<sub>2</sub>O and N<sub>2</sub> emissions, when plant N uptake is low due to smaller root system or root senescence. (II) Denitrification is stimulated by higher C<sub>org</sub> availability from root exudation or decaying roots increasing total gaseous N emissions while decreasing their N<sub>2</sub>O/(N<sub>2</sub>O+N<sub>2</sub>) ratios.</p><p>We tested these assumptions in a double labeling pot experiment with maize (Zea mays L.) grown under three N fertilization levels S / M / L (no / moderate / high N fertilization) and with cup plant (Silphium perfoliatum L., moderate N fertilization). After 6 weeks, all plants were labeled with 0.1 g N kg<sup>-1</sup> (Ca(<sup>15</sup>NO<sub>3</sub>)<sub>2</sub>, 60 at%), and the <sup>15</sup>N tracer method was applied to estimate plant N uptake, N<sub>2</sub>O and N<sub>2</sub> emissions. To link denitrification with available C in the rhizosphere, <sup>13</sup>CO<sub>2</sub> pulse labeling (5 g Na<sub>2</sub><sup>13</sup>CO<sub>3</sub>, 99 at%) was used to trace C translocation from shoots to roots and its release by roots into the soil. CO<sub>2</sub> evolving from soil was trapped in NaOH for &#948;<sup>13</sup>C analyses, and gas samples were taken for analysis of N<sub>2</sub>O and N<sub>2</sub> from the headspace above the soil surface every 12 h.</p><p>Although pots were irrigated, changing soil moisture through differences in plant water uptake was the main factor controlling daily N<sub>2</sub>O+N<sub>2</sub> fluxes, cumulative N emissions, and N<sub>2</sub>O production pathways. In addition, total N<sub>2</sub>O+N<sub>2</sub> emissions were negatively correlated with plant N uptake and positively with soil N concentrations. Recently assimilated C released by roots (<sup>13</sup>C) was positively correlated with root dry matter, but we could not detect any relationship with cumulative N emissions. We anticipate that higher C<sub>org</sub> availability in pots with large root systems did not lead to higher denitrification rates as NO<sub>3</sub><sup>-</sup> was limited due to plant uptake. In conclusion, plant growth controlled water and NO<sub>3</sub><sup>-</sup> uptake and, subsequently, formation of anaerobic hotspots for denitrification.</p>