A Molecular Dynamics Simulation Study Towards Understanding the Effects of Diameter and Chirality on Hydrogen Adsorption in Singlewalled Carbon Nanotubes

2003 ◽  
Vol 801 ◽  
Author(s):  
Hansong Cheng ◽  
Alan C. Cooper ◽  
Guido P. Pez ◽  
Milen K. Kostov ◽  
Milton W. Cole ◽  
...  
Keyword(s):  
Carbon Nanotubes ◽  
Molecular Dynamics ◽  
Hydrogen Adsorption ◽  
Md Simulations ◽  
Substantial Effect ◽  
Dynamics Simulation ◽  
Physical Parameters ◽  
Wide Range ◽  
Field Methodology ◽  
Molecular Forces

ABSTRACTA force field methodology has been developed for the description of carbon-carbon and carbon-molecular hydrogen interactions that is ideally suited to modeling hydrogen adsorption on single-walled carbon nanotubes (SWNT). The method makes use of existing parameters of potential functions developed for sp2 and sp3 hybridized carbon atoms and allows accurate representation of molecular forces on curved carbon surfaces. This approach has been used in molecular dynamics (MD) simulations for hydrogen adsorption in SWNT. The results reveal significant nanotube deformations, consistent with ab initio MD simulations, and the calculated energies of adsorption at room temperature are comparable to the reported experimental heats of adsorption for H2 in SWNT. The efficiency of this new method has permitted the MD simulation of hydrogen adsorption on a wide range of SWNT types, varying such parameters as nanotube diameter and chirality. The results show that these SWNT physical parameters have a substantial effect on the energies of adsorption and hydrogen capacities.

Molecular Dynamics Simulation of Bi-Carboxyl Sidewall Functionalized Single-Wall Carbon Nanotubes in Water

2015 ◽  
Vol 1131 ◽  
pp. 106-109
Author(s):  
Shongpun Lokavee ◽  
Chatchawal Wongchoosuk ◽  
Teerakiat Kerdcharoen
Keyword(s):  
Carbon Nanotubes ◽  
Molecular Dynamics ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Single Wall Carbon Nanotubes ◽  
First Principles Calculations ◽  
Carboxylic Groups ◽  
Potential Applications ◽  
Walled Carbon Nanotubes ◽  
Defective Sites

Functionalized single-walled carbon nanotubes (f-SWNTs) have attracted great interest due to their enhancement of SWNT properties leading to an increase in potential applications beyond those of pristine SWNT. In this work, we have investigated the behavior of open-end (9,0) bi-carboxyl sidewall functionalized SWNTs in water using molecular dynamics (MD) technique within GROMACS software package based on the OPLS force fields with modified charges obtained from the first principles calculations. The model tubes including perfect and defective nanotubes covalently functionalized by bi-carboxylic groups on different sidewall surface orientation were fully optimized by B3LYP/6-31G(d,p). The simulations were performed at the constant volume and temperature in a rectangular box with periodic boundary conditions in which each system contains one model tube and ~1680 water molecules. The results form MD simulations showed that functionalization on the central carbon atom in the (C1,C ́1)SW-defective sites strongly affects on the dynamic behavior of CNT in water. Results showed that the hydrophilic behavior of the functionalized SWNT has been improved over the pristine and defective nanotubes.

Molecular Dynamics Simulation on the Tension Deformation of Carbon Nanotubes

2011 ◽  
Vol 697-698 ◽  
pp. 487-490
Author(s):  
M.Y. Zhou ◽  
Yan Ling Tian ◽  
Z. Ren ◽  
H.Y. Zheng ◽  
R.B. Wei
Keyword(s):  
Carbon Nanotubes ◽  
Molecular Dynamics ◽  
Young’S Modulus ◽  
Young's Modulus ◽  
Single Walled Carbon Nanotubes ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Multi Walled Carbon Nanotubes ◽  
Walled Carbon Nanotubes ◽  
The Relationship

Molecular dynamics (MD) simulations were used to investigate the elastic properties of carbon nanotubes (CNTs). Displacements were loaded to CNTs on the tension deformation simulations. In order to better understand the relationship between Young’s modulus and the structure of the CNTs, different chiralities and diameters were involved. It is found that the Young’s modulus will be no more sensitive as in the single-walled carbon nanotubes (SWCNTs) with increasing walls. The tension deformation results also indicate that SWCNTs have better elastic property compared to multi-walled carbon nanotubes (MWCNTs).

scholarly journals Investigation of vibrational manner of carbon nanotubes in the vicinity of ultrasonic argon flow using molecular dynamics simulation

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Iman Karami ◽  
S. Ali Eftekhari ◽  
Davood Toghraie
Keyword(s):  
Carbon Nanotubes ◽  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Oscillation Amplitude ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Vibrational Behavior ◽  
Atomic Structures ◽  
Argon Flow ◽  
The Stability

AbstractAmong various types of nanostructures, carbon nanotube (CNT) is one of the most important nanostructures. These nanostructures have been considered due to their mechanical, thermal, and vibrational properties. In this research, this nanostructure’s vibrational behavior in the vicinity of argon flow in the vicinity of ultrasonic velocity was investigated. The effect of factors such as the stability of atomic structures, the atomic manner of carbon nanotubes in the presence of ultrasonic fluid, the influence of carbon nanotubes’ length, and the chirality of carbon nanotubes on vibrational behavior was studied by molecular dynamics simulation. The MD simulations display an enhance in amplitude and a decrease in the oscillation frequency. Physically, these simulations’ results indicated the appropriate mechanical strength of carbon nanotubes in the presence of argon fluid. Numerically, the simulated carbon nanotubes’ minimum oscillation amplitude and frequency were equal to 2.02 nm and 10.14 ps−1. On the other hand, the maximum physical quantities were expressed as 4.03 nm and 13.01 ps−1.

scholarly journals Effect of Size and Temperature on Water Dynamics inside Carbon Nano-Tubes Studied by Molecular Dynamics Simulation

Molecules ◽  
2021 ◽  
Vol 26 (20) ◽  
pp. 6175
Author(s):  
Amit Srivastava ◽  
Jamal Hassan ◽  
Dirar Homouz
Keyword(s):  
Molecular Dynamics ◽  
Md Simulations ◽  
Underlying Mechanism ◽  
Bulk Water ◽  
Water Dynamics ◽  
Dynamics Simulation ◽  
Water Molecules ◽  
Wide Range ◽  
Carbon Nano Tubes ◽  
20 Nm

Water transport inside carbon nano-tubes (CNTs) has attracted considerable attention due to its nano-fluidic properties, its importance in nonporous systems, and the wide range of applications in membrane desalination and biological medicine. Recent studies show an enhancement of water diffusion inside nano-channels depending on the size of the nano-confinement. However, the underlying mechanism of this enhancement is not well understood yet. In this study, we performed Molecular Dynamics (MD) simulations to study water flow inside CNT systems. The length of CNTs considered in this study is 20 nm, but their diameters vary from 1 to 10 nm. The simulations are conducted at temperatures ranging from 260 K to 320 K. We observe that water molecules are arranged into coaxial water tubular sheets. The number of these tubular sheets depends on the CNT size. Further analysis reveals that the diffusion of water molecules along the CNT axis deviates from the Arrhenius temperature dependence. The non-Arrhenius relationship results from a fragile liquid-like water component persisting at low temperatures with fragility higher than that of the bulk water.

scholarly journals STUDY OF PRISTINE CARBON NANOTUBE UNDER TENSILE AND COMPRESSIVE LOADS USING MOLECULAR DYNAMICS SIMULATION

2010 ◽  
Vol 40 (2) ◽  
pp. 72-78 ◽  
Author(s):  
S. N. Hossain Rubaiyat ◽  
Sanjib Chandra Chowdhury
Keyword(s):  
Mechanical Properties ◽  
Carbon Nanotubes ◽  
Molecular Dynamics ◽  
Equations Of Motion ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Strength Failure ◽  
Compressive Loads ◽  
Brenner Potential ◽  
Very High

After the discovery, carbon nanotubes (CNTs) have received tremendous scientific and industrial interests. This is due to their exceptional mechanical, electrical, and thermal properties. CNTs having pristine structure (i.e., structure without any defect) hold very high mechanical properties. In this article, mechanical properties of CNTs are studied under both tensile and compressive loads using molecular dynamics (MD) simulations. Four armchair single-walled nanotubes (SWNTs) having indexes of (3,3), (4,4), (5,5) and (6,6) with pristine structure are simulated with MD. Molecular simulations are carried out using the classical MD method, in which the Newtonian equations of motion are solved numerically for a set of atoms. The velocity- Verlet algorithm is used for solving the Newtonian equations of motion. The Brenner potential is used for carbon-carbon interaction in the CNT and temperature of the system is controlled by velocity scaling. Simulation results show that modulus of elasticity of CNTs varies significantly with CNT diameter. The results obtained from the compressive test by MD simulations are in well agreement with the results obtained from theoretical Euler equation and parabolic equation for long and short column respectively.Keywords: Carbon nanotubes; Molecular dynamics; Young’s modulus; Failure strength; Failure strain.DOI: 10.3329/jme.v40i2.5346Journal of Mechanical Engineering, Vol. ME 40, No. 2, December 2009 72-78

Microemulsion Effects on Oil Recovery From Kerogen Using Molecular-Dynamics Simulation

SPE Journal ◽  
2019 ◽  
Vol 24 (06) ◽  
pp. 2541-2554 ◽  
Author(s):  
Khoa Bui ◽  
I.. Yucel Akkutlu ◽  
Andrei S. Zelenev ◽  
W. A. Hill ◽  
Christian Griman ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Oil Recovery ◽  
Aqueous Dispersion ◽  
Md Simulations ◽  
Pore Network ◽  
Source Rocks ◽  
Dynamics Simulation ◽  
Fluid Composition ◽  
Surfactant Micelles ◽  
Molecular Forces

Summary Source rocks contain significant volumes of hydrocarbon fluids trapped in kerogen, but effective recovery is challenged because of amplified fluid/wall interactions and the nanopore–confinement effect on the hydrocarbon–fluid composition. Enhanced oil production can be achieved by modifying the existing molecular forces in a kerogen pore network using custom–designed targeted–chemistry technologies. The objective of this paper is to show that the maturation of kerogen during catagenesis relates to the qualities of the kerogen pore network, such as pore size, shape, and connectivity, and plays an important role in the recovery of hydrocarbons. Furthermore, using molecular–dynamics (MD) simulations, we investigated how the transport of hydrocarbons in kerogen and hydrocarbon recovery can be altered with the delivery of microemulsion and surfactant micelles into the pore network. New 3D kerogen models are presented using atomistic modeling and molecular simulations. These models possess important chemical and physical characteristics of the organic matter of the source rock. A replica of Type II kerogen representative of the source rocks in the Permian Basin in the US is used for the subsequent recovery simulations. Oil–saturated kerogen is modeled as consisting of nine different types of molecules: dimethyl naphthalene, toluene, tetradecane, decane, octane, butane, propane, ethane, and methane. The delivered microemulsion is an aqueous dispersion of solvent–swollen surfactant micelles. The solvent and nonionic surfactant present in the microemulsion are modeled as d–limonene and dodecanol heptaethyl ether (C12E7), respectively. MD simulation experiments include two stages: injection of an aqueous–phase microemulsion treatment fluid into the oil–saturated kerogen pore network, and transient flowback of the fluids in the pore network. The used 3D kerogen models were developed using a representative oil–sample composition (hydrogen, carbon, oxygen, sulfur, and nitrogen) from the region. Simulation results show that microemulsions affect the reservoir by means of two different mechanisms. First, during the injection, microemulsion droplets possess elastic properties that allow them to squeeze through inorganic pores smaller than the droplet's own diameter and to adsorb at the kerogen surfaces. The solvent dissolves in the oil phase and alters the physical and transport properties of the phase. Second, the surfactant molecules modify the wettability of the solid kerogen surfaces. Consequently, the recovery effectiveness of heavier oil fractions is improved compared with the recovery effectiveness achieved with surfactant micelles without the solubilized solvent. The results indicate that solubilized solvent and surfactant can be effectively delivered into organic–rich nanoporous formations as part of a microemulsion droplet and aid in the mobilization of the kerogen oil.

scholarly journals Understanding Covalent Grafting of Nanotubes onto Polymer Nanocomposites: Molecular Dynamics Simulation Study

Sensors ◽  
2021 ◽  
Vol 21 (8) ◽  
pp. 2621
Author(s):  
Seunghwa Yang
Keyword(s):  
Molecular Dynamics ◽  
Load Transfer ◽  
Cell Model ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Covalent Grafting ◽  
Modelling Strategies ◽  
Multi Walled Carbon Nanotubes ◽  
Walled Carbon Nanotubes ◽  
External Loads

Here, we systematically interrogate the effects of grafting single-walled (SWNT) and multi-walled carbon nanotubes (MWNT) to polymer matrices by using molecular dynamics (MD) simulations. We specifically investigate key material properties that include interfacial load transfer, alteration of nanotube properties, and dispersion of nanotubes in the polymer matrix. Simulations are conducted on a periodic unit cell model of the nanocomposite with a straight carbon nanotube and an amorphous polyethylene terephthalate (PET) matrix. For each type of nanotube, either 0%, 1.55%, or 3.1% of the carbon atoms in the outermost nanotubes are covalently grafted onto the carbon atoms of the PET matrix. Stress-strain curves and the elastic moduli of nanotubes and nanocomposites are determined based on the density of covalent grafting. Covalent grafting promotes two rivalling effects with respect to altering nanotube properties, and improvements in interfacial load transfer in the nanocomposites are clearly observed. The enhanced interface enables external loads applied to the nanocomposites to be efficiently transferred to the grafted nanotubes. Covalent functionalization of the nanotube surface with PET molecules can alter the solubility of nanotubes and improve dispersibility. Finally, we discuss the current limitations and challenges in using molecular modelling strategies to accurately predict properties on the nanotube and polymers systems studied here.

scholarly journals Ligand-induced structural changes analysis of ribose-binding protein as studied by molecular dynamics simulations

2021 ◽  
pp. 1-12
Author(s):  
Haiyan Li ◽  
Zanxia Cao ◽  
Guodong Hu ◽  
Liling Zhao ◽  
Chunling Wang ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Structural Changes ◽  
Binding Protein ◽  
Network Models ◽  
Md Simulations ◽  
Protein Domain ◽  
Opening Angle ◽  
Conformation Changes ◽  
Wide Range ◽  
Ribose Binding Protein

BACKGROUND: The ribose-binding protein (RBP) from Escherichia coli is one of the representative structures of periplasmic binding proteins. Binding of ribose at the cleft between two domains causes a conformational change corresponding to a closure of two domains around the ligand. The RBP has been crystallized in the open and closed conformations. OBJECTIVE: With the complex trajectory as a control, our goal was to study the conformation changes induced by the detachment of the ligand, and the results have been revealed from two computational tools, MD simulations and elastic network models. METHODS: Molecular dynamics (MD) simulations were performed to study the conformation changes of RBP starting from the open-apo, closed-holo and closed-apo conformations. RESULTS: The evolution of the domain opening angle θ clearly indicates large structural changes. The simulations indicate that the closed states in the absence of ribose are inclined to transition to the open states and that ribose-free RBP exists in a wide range of conformations. The first three dominant principal motions derived from the closed-apo trajectories, consisting of rotating, bending and twisting motions, account for the major rearrangement of the domains from the closed to the open conformation. CONCLUSIONS: The motions showed a strong one-to-one correspondence with the slowest modes from our previous study of RBP with the anisotropic network model (ANM). The results obtained for RBP contribute to the generalization of robustness for protein domain motion studies using either the ANM or PCA for trajectories obtained from MD.

A Study on the Uniaxial Tension of FCC Metals at Nano Level Using MD

2008 ◽  
Vol 32 ◽  
pp. 255-258
Author(s):  
Bohayra Mortazavi ◽  
Akbar Afaghi Khatibi
Keyword(s):  
Molecular Dynamics ◽  
Uniaxial Tension ◽  
Md Simulations ◽  
Dynamics Simulation ◽  
Face Centered Cubic ◽  
Engineering Strain ◽  
Fcc Metals ◽  
Engineering Stress ◽  
Nano Science ◽  
Face Centered

Molecular Dynamics (MD) are now having orthodox means for simulation of matter in nano-scale. It can be regarded as an accurate alternative for experimental work in nano-science. In this paper, Molecular Dynamics simulation of uniaxial tension of some face centered cubic (FCC) metals (namely Au, Ag, Cu and Ni) at nano-level have been carried out. Sutton-Chen potential functions and velocity Verlet formulation of Noise-Hoover dynamic as well as periodic boundary conditions were applied. MD simulations at different loading rates and temperatures were conducted, and it was concluded that by increasing the temperature, maximum engineering stress decreases while engineering strain at failure is increasing. On the other hand, by increasing the loading rate both maximum engineering stress and strain at failure are increasing.

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