Rapid and direct method to extract SARS-CoV-2 RNA from municipal wastewater using the Chemagic™ 360 12-rod head platform v1
Wastewater based epidemiology (WBE) has emerged as a strategy to identify, locate, predict, and manage outbreaks of COVID-19, as an early warning signal to public health authorities of an expected surge in cases that may overwhelm local and global health care resources.. The WBE process is based on assaying municipal wastewater for molecular markers of the SARS-CoV-2 virus. The standard process for sampling municipal wastewater is time-consuming and requires the handling of large quantities of wastewater, which negatively affects throughput and timely reporting, and can increase safety risks. We report on a rapid and direct mostly automated method to assay multiple sub-samples of a bulk wastewater sample using a 75 minute run on the Chemagic™ 360 12 rod head platform. Including a preceding setup and incubation step, twelve 10 ml samples can be processed to purified RNA in 2.5 hrs. Up to 10 ml of wastewater from 12 different collection sites can be processed in 2.5 hrs.