Phenotypic diversity of soybean (Glycine max (L.) Merr.)accessions in the Philippines for utilization

2016 ◽  
Author(s):  
Hidelisa De Chavez ◽  
Teresita Borromeo ◽  
Nic Oswald Borines ◽  
Renerio Jr Gentallan
Keyword(s):  
Coat Color ◽  
Phenotypic Diversity ◽  
Germplasm Collection ◽  
Principal Component ◽  
Diversity Indices ◽  
Morphological Characters ◽  
The Philippines ◽  
Soybean Germplasm ◽  
Plant Growth Habit ◽  
Qualitative Characters

An increasing trend of soybean production and consumption has been seen in the Philippines. To assess the potential of the soybean germplasm for utilization, diversity of the Philippine soybean collection was established. High diversity was marked on 17 out of 29 qualitative characters, which include plant growth habit, leaf blistering and flower standard color. Phenotypic diversity indices (H’) of 92 soybean accessions averaged at 0.62. This aside, traits identical to a variety of soybean with superior characters were all present in the soybean germplasm collection. Using simple matching similarity coefficient, cluster analysis separated the different accessions into 12 distinct clusters at 62% similarity. Categorical Principal Component Analysis (CATPCA) showed that two independent components accounted for 35.36% of the total variation of the qualitative morphological characters. Factor loadings for each component showed the morphological characters, such as pubescence color, flower wing color, and seed coat color, that were contributing to the high projections in the two principal components. Accessions with vigorous seedlings were also observed. With the marked trait diversity, the soybean collection could be potentially used directly and for breeding purposes. Consequently, to uncover further the potential of our genetic resources at hand, the remaining germplasm accessions at NPGRL should be characterized and evaluated

Morphological variation in the genus Juliomys (Rodentia: Cricetidae: Sigmodontinae) and taxonomic status of Juliomys anoblepas (Winge 1887) from the Quaternary of Southeast Brazil

Zootaxa ◽  
2020 ◽  
Vol 4861 (3) ◽  
pp. 429-443
Author(s):  
CAROLINA PIRES ◽  
MARCELO WEKSLER ◽  
CIBELE R. BONVICINO
Keyword(s):  
Principal Component Analysis ◽  
Morphological Variation ◽  
Morphological Analysis ◽  
Principal Component ◽  
Taxonomic Status ◽  
Morphological Characters ◽  
The Other ◽  
Anterior Portion ◽  
Living Species ◽  
Qualitative Characters

The region of Lagoa Santa, Minas Gerais, Brazil, is one of the most important karstic areas of the Brazilian Quaternary due to the faunistic diversity of living and extinct forms. Among them, some taxa remain poorly studied, as is the case of Calomys anoblepas Winge 1887. Despite the recent allocation of the taxon within Juliomys, its description and morphological analysis are condensed, based on comparative few specimens and on few informative characters. In this study, we investigate characters proposed to distinguish species of Juliomys, and reevaluate the taxonomic status of the fossil Juliomys anoblepas. We analyzed 80 cranio-dental morphological characters in 233 specimens represented by the four species currently recognized: J. pictipes (Osgood 1933), J. rimofrons Oliveira & Bonvicino 2002, J. ossitenuis Costa, Pavan, Leite & Fagundes 2007, and J. ximenezi Christoff, Vieira, Oliveira, Gonçalves, Valiati & Tomasi 2016. We also performed principal component analysis on eight craniodental measurements available for the J. anoblepas hypodigm. The review of morphological systems and the evaluation of the characters used in the literature revealed that there are no diagnostic characters in the anterior portion of the skull and in the molar series of Juliomys, being difficult to differentiate the fossil from the other living species. Only six qualitative characters were variable and applicable to the hypodigm of J. anoblepas. Characters are polymorphic, invariable, or the fossil is not sufficiently complete to determinate its states. The taxon could not be morphometrically differentiated from J. pictipes and J. ossitenuis. Based on the results presented herein, we consider J. anoblepas as a nomen dubium and restrict its name to the taxon’s hypodigm. 

scholarly journals Geographical patterns of phenotypic diversity and structure of Kenyan wild sorghum populations (Sorghum spp.) as an aid to germplasm collection and conservation strategy

2010 ◽  
Vol 8 (3) ◽  
pp. 217-224 ◽  
Author(s):  
Moses M. Muraya ◽  
Hartwig H. Geiger ◽  
Evans Mutegi ◽  
Ben M. Kanyenji ◽  
Fabrice Sagnard ◽  
...  
Keyword(s):  
Phenotypic Diversity ◽  
Diversity Index ◽  
Flag Leaf ◽  
Germplasm Collection ◽  
Principal Component ◽  
Conservation Strategy ◽  
Ex Situ ◽  
Regional Differentiation ◽  
Wild Sorghum ◽  
Geographical Patterns

Kenya lies within sorghum centre of diversity. However, information on the relative extent of diversity patterns within and among genetically defined groups of distinct ecosystems is lacking. The objective was to assess the structure and phenotypic diversity of wild sorghum populations across a range of geographical and ecological conditions in the country. Sixty-two wild sorghum populations (30 individuals per population) sampled from four distinct sorghum growing regions of Kenya and covering different agroecologies were characterized for ten qualitative traits. Plant height, number of tillers, panicle sizes and flag leaf dimensions were also recorded. Frequencies of the phenotypic classes of each character were calculated. The Shannon diversity index (H′) was used to estimate the magnitude of diversity. Principal component analysis was used to differentiate populations within and between regions. Wild sorghum is widely distributed in Kenya, occurring in sympatric ranges with cultivated sorghum, and both have overlapping flowering windows. All characters considered displayed great phenotypic diversity. Pooled over characters within regions, the mean H′ ranged between 0.60 and 0.93 in Western and Coast regions, respectively. Wild sorghum was found to show a weak regional differentiation, probably reflecting the importance of seed-mediated gene flow in shaping the wild sorghum population structure. Trait distribution was variable among regions, but there was no conspicuous distribution of the traits studied in any given region. Spontaneous hybridization and introgression of genes from cultivated to wild sorghum seems to be likely, and may already have occurred for a long time, although undocumented. Implications for in situ and ex situ genetic resources conservation are discussed.

Diversity of Ethiopian tetraploid wheat germplasm: breeding opportunities for improving grain yield potential and quality traits

2009 ◽  
Vol 7 (1) ◽  
pp. 1-8 ◽  
Author(s):  
Yifru Teklu ◽  
Karl Hammer
Keyword(s):  
Total Variation ◽  
Phenotypic Diversity ◽  
Diversity Index ◽  
Tetraploid Wheat ◽  
Principal Component ◽  
Diversity Indices ◽  
Yield Potential ◽  
Wheat Improvement ◽  
Geographical Regions ◽  
Diversity Studies

In this paper, Shannon–Weaver diversity indices were employed to examine the phenotypic diversity in 271 Ethiopian tetraploid wheat accessions in relation to characters, regions of origin and altitude. Moreover, review of genetic diversity studies in Ethiopian tetraploid wheat was made to explore breeding opportunities. The diversity index varied widely across regions. Among the four altitudinal classes, the highest (0.72) and lowest (0.61) mean diversity indices were observed in altitude classes II and IV, respectively. The diversity index (H′) showed that most traits are polymorphic. The partitioning of the total phenotypic diversity into within- and among-region diversity indicated that 71% of the total variation was attributed to the within-region diversity. Principal component analysis was computed to examine the regional and altitudinal patterns of variation. On regional bases, the first four axes, whose eigenvalues are greater than 1, explained about 82% of the observed phenotypic diversity in the 271 tetraploid wheat accessions. On altitudinal bases, however, only the first two principal components explained 89.7% of the total variation. In general, phenotypic diversity showed considerable differences for each trait in different geographical regions and altitudinal classes which could be utilized in wheat improvement programmes. Breeding opportunities and strategies are suggested.

Phenotypic diversity and relationships among Chilean Choclero maize (Zea mays L. mays) landraces

2016 ◽  
Vol 15 (5) ◽  
pp. 461-473 ◽  
Author(s):  
Erika Salazar ◽  
José Correa ◽  
María José Araya ◽  
Marco A. Méndez ◽  
Basilio Carrasco
Keyword(s):  
Zea Mays L ◽  
Phenotypic Diversity ◽  
Germplasm Collection ◽  
Principal Component ◽  
Cultural Value ◽  
New Materials ◽  
Good Source ◽  
Wide Range ◽  
Production Area ◽  
Core Production

AbstractChoclero is a Chilean traditional floury maize, consumed as a vegetable, with large economic and cultural value due to its culinary properties that give unique characteristics to the traditional local cuisine. Market diversification demands new materials with different ear and kernel characteristics, which are at present not fulfilled by breeders due to lack of genetic diversity. At present, the Instituto de Investigaciones Agropecuarias has a Choclero germplasm collection composed of 96 accessions, which can supply this lack of diversity, or increase the gene pool. In the present study, 34 selected Chilean Choclero landraces were characterized for 41 agromorphological traits. Phenotypic evaluation in three environments representative of the core production area revealed significant genetic variability for most of the evaluated traits, leading to the identification of several promising accessions. The greater contribution of genotype in most phenological plant, ear and kernel traits suggest their potential usefulness for breeding purposes. Principal component analysis explained over 75% of the total variation for 29 quantitative agromorphological traits. Cluster analysis separated accessions into four major groups, differentiated mainly by plant phenology and ear trait. These findings indicate a number of useful traits at an intra-racial level and a wide range of phenotypic variation that provides a good source of diversity for use in the development of new Choclero varieties.

Assessment of Variability Based on Morphometric Characteristics in the Core Set of Soybean Germplasm Accessions

2020 ◽  
Author(s):  
K. Shruthi ◽  
R. Siddaraju ◽  
K. Naveena ◽  
T. M. Ramanappa ◽  
K. Vishwanath
Keyword(s):  
Genetic Diversity ◽  
Quantitative Traits ◽  
Coat Color ◽  
Leaf Shape ◽  
Flower Color ◽  
Diversity Indices ◽  
Genetic Advance ◽  
Morphometric Traits ◽  
Soybean Germplasm ◽  
Core Set

The present study aimed at assessing the extent and pattern of genetic diversity within a core set of soybean germplasm comprising of 98 accessions. A total of thirty-one morphometric traits were studied, among them qualitative traits viz., leaf shape, flower color, seed coat color, and hypocotyl colour showed a higher genetic diversity with higher diversity indices. The variability parameters like mean, range of variation, GCV, PCV, heritability and genetic advance were estimated for 18 quantitative traits. The differences between GCV and PCV estimates were narrow for most quantitative traits indicating less contribution of environmental factors in traits expression. High estimates of heritability coupled with high genetic advance were observed in all quantitative traits except for days to maturity. The traits with higher heritability and GA value may indicate their variability and high selective value. Expression of lines in biplots using the first four principal components explains 79.10% of total variation and says black and yellow seeded genotypes have higher and lower variability to exploit, respectively. Hence, selection pressure could profitably be applied to these traits for their improvement.

scholarly journals Geographical patterns of diversity for qualitative and quantitative traits in the pigeonpea germplasm collection

2005 ◽  
Vol 3 (3) ◽  
pp. 331-352 ◽  
Author(s):  
Hari D. Upadhyaya ◽  
R.P.S. Pundir ◽  
C.L.L. Gowda ◽  
K.N. Reddy ◽  
Sube Singh
Keyword(s):  
Quantitative Traits ◽  
Diversity Index ◽  
Germplasm Collection ◽  
Flower Colour ◽  
Principal Component ◽  
The Philippines ◽  
Growth Duration ◽  
Flowering Pattern ◽  
Stem Colour ◽  
Germplasm Accessions

We analysed the patterns of variation for 14 qualitative and 12 quantitative traits in 11,402 pigeonpea germplasm accessions from 54 countries, which were grouped into 11 regions. Semi-spreading growth habit, green stem colour, indeterminate flowering pattern and yellow flower colour were predominant among qualitative traits. Primary seed colour had maximum variability and orange colour followed by cream were the two most frequent seed colours in the collection. Variances for all the traits were heterogeneous among regions. The germplasm accessions from Oceania were conspicuous by short growth duration, short height, fewer branches, pods with fewer seeds, smaller seed size and lower seed yields. The accessions from Africa were of longer duration, taller, with multi-seeded pods and larger seeds. The germplasm diversity indicated by Shannon–Weaver diversity index (H′) pooled over all traits, was highest for Africa (0.464±0.039) and lowest for Oceania (0.337±0.037). The cluster analysis based on three principal component scores using 12 quantitative traits revealed formation of three clusters: cluster 1 includes accessions from Oceania; cluster 2 from India and adjacent countries; and cluster 3 from Indonesia, Thailand, the Philippines, Europe, Africa, America and the Caribbean countries. Pigeonpea-rich countries such as Myanmar, Uganda, and others like Bahamas, Burundi, Comoros, Haiti and Panama are not adequately represented in the collection, and need priority attention for germplasm exploration.

scholarly journals Keragaman Beberapa Aksesi Temu Hitam (Curcuma aeruginosa Roxb.) Berdasarkan Karakter Morfologi

2017 ◽  
Vol 45 (1) ◽  
pp. 71-78
Author(s):  
Adi Setiadi ◽  
Nurul Khumaida ◽  
Dan Sintho Wahyuning Ardie
Keyword(s):  
Medicinal Plant ◽  
Curcuma Longa ◽  
Germplasm Collection ◽  
Principal Component ◽  
Component Analysis ◽  
Morphological Characters ◽  
Raw Material ◽  
The People ◽  
The Family ◽  
Important Medicinal Plant

Curcuma aeruginosa Roxb. or black turmeric belongs to the family Zingiberaceae is one of the important medicinal plant that is widely distributed in Southeast Asia, including in Indonesia. This plant has been used by the people especially as raw material for medicine and cosmetics industries. However, the development of black turmeric is still constrained by the availability of germplasm collection and improved varieties. The objective of this study was to determine the vegetative morphological characters and phylogenetic relationship among 10 accessions of black turmeric and 3 accessions of genus Curcuma in Indonesia. Data was collected for 15 morphological quantitative characters of black turmeric at the Experimental Garden at Sukamantri IPB based on UPOV and PPVFRA descriptors. The result of principal component analysis has determined three principal components with the proportion of diversity 73.94%. Cluster analysis three clusters accession of black turmeric, namely cluster 1 consisted of accession Cianjur, Malang, Rimbo, and Kendal; cluster 2 consisted of accession Bogor, turmeric (Curcuma longa L.), java turmeric (Curcuma xanthorrhiza Roxb.), Liwa, Natar, white turmeric (Curcuma zedoaria Roscoe.); cluster 3 consisted of accession Cirebon, Kuningan 1, and Kuningan 2. Keywords: cluster, component analysis, germplasm, medicinal plant, phylogenetic

scholarly journals Characterization of bovine MHC DRB3 diversity in global cattle breeds, with a focus on cattle in Myanmar

2020 ◽  
Author(s):  
Guillermo Giovambattista ◽  
Kyaw Kyaw Moe ◽  
Meripet Polat ◽  
Liushiqi Borjigin ◽  
Si Thu Hein ◽  
...  
Keyword(s):  
Coat Color ◽  
Genetic Locus ◽  
Geographical Location ◽  
Principal Component ◽  
The Philippines ◽  
Typing Method ◽  
Cattle Breeds ◽  
Holstein Friesian ◽  
Native Populations ◽  
Tropical Climates

Abstract Background: Myanmar cattle populations predominantly consist of native cattle breeds, characterized by their geographical location and coat color, and the Holstein-Friesian crossbreed, which is highly adapted to the harsh tropical climates of this region. Here, we analyzed the diversity and genetic structure of the BoLA-DRB3 gene, a genetic locus that has been linked to the immune response, in Myanmar cattle populations.Methods: Blood samples (n=294) were taken from two native breeds (Pyer Sein, n=163 and Shwe Ni, n=69) and a cattle crossbreed (Holstein-Friesian, n=62) distributed across six regions of Myanmar (Bago, n=38; Sagaing, n=77; Mandalay, n=46; Magway, n=46; Kayin, n=43; Yangon, n=44). DNA was genotyped using the sequence-based typing method. DNA electropherograms were analyzed using the Assign 400ATF software. Results: We detected 71 distinct alleles, including three new variants for the BoLA-DRB3 gene. Venn analysis showed that 11 of these alleles were only detected in Myanmar native breeds and 26 were only shared with Asian native and/or Zebu groups. The number of alleles ranged from 33 in Holstein-Friesians to 58 in Pyer Seins, and the observed versus unbiased expected heterozygosity were higher than 0.84 in all the three the populations analyzed. The FST analysis showed a low level of genetic differentiation between the two Myanmar native breeds (FST=0.003), and between these native breeds and the Holstein-Friesians (FST < 0.021). The average FST value for all the Myanmar Holstein-Friesian crossbred and Myanmar native populations was 0.0136 and 0.0121, respectively. Principal component analysis (PCA) and tree analysis showed that Myanmar native populations grouped in a narrow cluster that diverged clearly from the Holstein-Friesian populations. Furthermore, the BoLA-DRB3 allele frequencies suggested that while some Myanmar native populations (Bago, Mandalay and Yangon) were more closely related to Zebu breeds (Gir and Brahman), others (Kayin, Magway and Sagaing) were more related to the native breeds found in the Philippines. On the contrary, the Holstein-Friesian populations demonstrated a high degree of dispersion, which is likely the result of the different degrees of native admixture in these populations. Conclusion: These results contribute to our understanding of the genetic diversity and distribution of BoLA-DRB3 gene alleles in Myanmar.

scholarly journals Variation in morphological characters of Marsilea crenata living in floating aquatic, emergent aquatic, and terrestrial habitats

2021 ◽  
Vol 22 (7) ◽  
Author(s):  
WISANTI WISANTI ◽  
DURAN COREBIMA ALOYSIUS ◽  
Siti Zubaidah ◽  
SRI RAHAYU LESTARI
Keyword(s):  
Principal Component ◽  
Morphological Characters ◽  
Natural Habitats ◽  
Morphological Variations ◽  
Quantitative Characters ◽  
Morphological Adaptations ◽  
Terrestrial Habitats ◽  
Grouping Pattern ◽  
Qualitative Characters ◽  
Two Populations

Abstract. Wisanti, Aloysius DC, Zubaidah S, Lestari SR. 2021. Variation in morphological characters of Marsilea crenata living in floating aquatic, emergent aquatic, and terrestrial habitats. Biodiversitas 22: 2853-2859. Marsilea is a hydrophyte fern that has plasticity often influenced by enviroment. Several of the species with different habitats or geographies show morphological variations. Therefore, this study aims to analyze the variations in morphological characters of M. crenata growing in aquatic and terrestrial habitats. A total of 38 plant samples were collected from their natural habitats including floating aquatic, emergent aquatic, and terrestrial types. Morphological variations data included 4 qualitative characters and 9 quantitative characters. The quantitative characters were analyzed by one-way ANOVA to test for differences, while the combination of both characters was analyzed using Principal Component Analysis (PCA) to determine the distribution between groups. The data results showed a separate grouping pattern between aquatic and terrestrial populations. These two groups showed significant differences in 5 quantitative characters and 2 qualitative characters. However, emergent aquatic samples’ distribution pattern is closer to the terrestrial group. The characters’ similarity of these two populations was in ??the rhizomes air spaces area, the position between leaflets and absence of red streak on the abaxial lamina. Conclusively, the variations in M. crenata’s morphological characters indicate that this plant has experienced morphological adaptations to water availability in its environment.

scholarly journals Morphological variability of recent species of the order Cassiduloida (Echinodermata: Echinoidea) of Mexico

2021 ◽  
Vol 69 (Suppl.1) ◽  
pp. 423-437
Author(s):  
Andrea-Alejandra Caballero-Ochoa ◽  
Blanca-E. Buitrón-Sánchez ◽  
Carlos-A. Conejeros-Vargas ◽  
Brenda-L. Esteban-Vázquez ◽  
Mariana-P. Ruiz-Nava ◽  
...  
Keyword(s):  
Direct Relationship ◽  
Morphological Variability ◽  
Principal Component ◽  
Morphological Characters ◽  
Morphometric Characters ◽  
Living Species ◽  
Qualitative Characters ◽  
Recent Species ◽  
Taxonomic Studies ◽  
Character Correlations

ntroduction: In Mexico, there are two recorded living species of Cassiduloida: Cassidulus caribaearum and Rhyncholampas pacifica. Most of the taxonomic studies on cassiduloids have used external morphology, pedicellariae and morphometric characters; however, the intraspecific variation of quantitative and qualitative characters has been poorly evaluated. Objective: To compare the basic morphology of R. pacifica and C. caribaearum. Methods: We examined a total of 2 158 specimens of R. pacifica and C. caribaearum, selecting 50 to evaluate shape and size with linear regression and Principal Component analysis. We selected an additional 62 specimens per species to identify significant character correlations and morphological groups within species. Results: There is a direct relationship between Test length and Test width. Test height/Test width, and Total length (oral view)/Distance from the ambitus to the peristome apex, are the two main ratios to distinguish both species. C. caribaearum is more dorsoventrally compressed and has a round peristome base; versus R. pacifica has a tall and triangular one. There are four morphological groups of C. caribaearum and two groups for R. pacifica. Conclusions: These two species can be distinguished with reliable morphological characters, in which peristome shape suggests that R. pacifica is more adapted to burrowing deeper into certain types of substratum.

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