scholarly journals Forecasting the Bladder Tumor Size and Immune Response of a Patient Over the Time Using a Dynamic Mathematical Model

Author(s):  
Clara Burgos ◽  
Noemí García-Medina ◽  
David Martínez-Rodríguez ◽  
José-Luis Pontones ◽  
David Ramos ◽  
...  

Bladder cancer is one of the most common malignant diseases in the urinary system and a highly aggressive neoplasm. The prognosis is not favourable usually and its evolution for particular patients is very difficult to find out. In this paper we propose a dynamic mathematical model that describes the bladder tumor growth and the immune response evolution. This model is customized for a single patient, determining appropriate model parameter values via model calibration. Due to the uncertainty of the tumor evolution, using the calibrated model parameters, we predict the tumor size and the immune response evolution over the next few months assuming three different scenarios: favourable, neutral and unfavourable. In the former, the cancer disappears; in the second a 5mm tumor is expected around the middle of August 2018; in the worst scenario, a 5mm tumor is expected around the end of May 2018. The patient has been cited around June 15th, 2018, to check the tumor size, if it exists.

Author(s):  
N.A. Babushkina ◽  
E.A. Kuzina ◽  
A.A. Loos ◽  
E.V. Belyaeva

The paper presents the mathematical description of the two stages of tumor cells’ death as a result of immune response after antitumor viral vaccine introduction. This mathematical description is presented by the system of nonlinear equations implemented in the MatLab-Simulink system. As a result of the computing experiment, two strategies for effective application of the antitumor viral vaccine were identified. The first strategy leads to complete elimination of the tumor cells after a single-shot administration of the vaccine. The second strategy makes it possible to stabilize tumor size through the recurrent introductions of the vaccine. Using the mathematical model of antitumor therapy, appropriate dosages were identified based on the number of tumor cells that die at the two stages of immune response. Dynamics of tumor growth for the two strategies of the viral vaccine application was forecasted based on the mathematical model of antitumor therapy with discontinuous trajectories of tumor growth. The computing experiments made it possible to identify initial tumor size at the start of the therapy and the dosages that allow complete elimination of the tumor cells after the single-shot introduction. For the second strategy, dosages and intervals between recurrent vaccine introductions required to stabilize tumor size at the initial level were also identified. The proposed approach to exploring the effectiveness of vaccine therapy may be applied to different types of experimental tumors and antitumor vaccines.


2020 ◽  
Author(s):  
Daniel Wallach ◽  
Taru Palosuo ◽  
Peter Thorburn ◽  
Zvi Hochman ◽  
Emmanuelle Gourdain ◽  
...  

Calibration, that is the estimation of model parameters based on fitting the model to experimental data, is among the first steps in essentially every application of crop models and process models in other fields and has an important impact on simulated values. The goal of this study is to develop a comprehensive list of the decisions involved in calibration and to identify the range of choices made in practice, as groundwork for developing guidelines for crop model calibration starting with phenology. Three groups of decisions are identified; the criterion for choosing the parameter values, the choice of parameters to estimate and numerical aspects of parameter estimation. It is found that in practice there is a large diversity of choices for every decision, even among modeling groups using the same model structure. These findings are relevant to process models in other fields.


2014 ◽  
Vol 11 (96) ◽  
pp. 20140094 ◽  
Author(s):  
Hannah E. Clapham ◽  
Vianney Tricou ◽  
Nguyen Van Vinh Chau ◽  
Cameron P. Simmons ◽  
Neil M. Ferguson

Dengue, the most common mosquito-borne viral infection of humans, is endemic across much of the world, including much of tropical Asia and is increasing in its geographical range. Here, we present a mathematical model of dengue virus dynamics within infected individuals, detailing the interaction between virus and a simple immune response. We fit this model to measurements of plasma viral titre from cases of primary and secondary DENV 1 infection in Vietnam. We show that variation in model parameters governing the immune response is sufficient to create the observed variation in virus dynamics between individuals. Estimating model parameter values, we find parameter differences between primary and secondary cases consistent with the theory of antibody-dependent enhancement (namely enhanced rates of viral entry to target cells in secondary cases). Finally, we use our model to examine the potential impact of an antiviral drug on the within-host dynamics of dengue. We conclude that the impact of antiviral therapy on virus dynamics is likely to be limited if therapy is only started at the onset of symptoms, owing to the typically late stage of viral pathogenesis reached by the time symptoms are manifested and thus treatment is started.


1998 ◽  
Vol 14 (3) ◽  
pp. 276-291 ◽  
Author(s):  
James C. Martin ◽  
Douglas L. Milliken ◽  
John E. Cobb ◽  
Kevin L. McFadden ◽  
Andrew R. Coggan

This investigation sought to determine if cycling power could be accurately modeled. A mathematical model of cycling power was derived, and values for each model parameter were determined. A bicycle-mounted power measurement system was validated by comparison with a laboratory ergometer. Power was measured during road cycling, and the measured values were compared with the values predicted by the model. The measured values for power were highly correlated (R2= .97) with, and were not different than, the modeled values. The standard error between the modeled and measured power (2.7 W) was very small. The model was also used to estimate the effects of changes in several model parameters on cycling velocity. Over the range of parameter values evaluated, velocity varied linearly (R2> .99). The results demonstrated that cycling power can be accurately predicted by a mathematical model.


2020 ◽  
Author(s):  
Jose A Egea ◽  
José Egea ◽  
David Ruiz

Abstract The Dynamic model has been described as one of the most accurate models to quantify chill accumulation based on hourly temperatures in nuts and temperate fruits. This model considers that a dynamic process occurs at a biochemical level that determines the endodormancy breaking through the accumulation of the so-called portions. The kinetic parameters present in the model should reflect how the fruit trees integrate chilling exposure and thus they should be characteristic for each species. However, the original parameter values, reported in the late 1980s, are still being used. Even if the use of such parameter values is useful to compare among chilling requirements (CRs) for different species or cultivars, it is not the optimal choice when one intends to explain the CR variations in different years for a given cultivar. In this work we propose a data-based model calibration that makes use of phenological data for different apricot cultivars within different years to obtain model parameters, which minimize the variations among years and that have, at the same time, physical meaning to characterize the incumbent species. Results reveal that the estimation not only reduces the accumulated portion dispersion within the considered time periods but also allows to improve the CR predictions for subsequent years. We propose a set of model parameter values to predict endodormancy breaking dates in the apricot cultivars studied here.


1997 ◽  
Vol 36 (5) ◽  
pp. 141-148 ◽  
Author(s):  
A. Mailhot ◽  
É. Gaume ◽  
J.-P. Villeneuve

The Storm Water Management Model's quality module is calibrated for a section of Québec City's sewer system using data collected during five rain events. It is shown that even for this simple model, calibration can fail: similarly a good fit between recorded data and simulation results can be obtained with quite different sets of model parameters, leading to great uncertainty on calibrated parameter values. In order to further investigate the lack of data and data uncertainty impacts on calibration, we used a new methodology based on the Metropolis Monte Carlo algorithm. This analysis shows that for a large amount of calibration data generated by the model itself, small data uncertainties are necessary to significantly decrease calibrated parameter uncertainties. This also confirms the usefulness of the Metropolis algorithm as a tool for uncertainty analysis in the context of model calibration.


2022 ◽  
Vol 12 ◽  
Author(s):  
Nicholas Mattia Marazzi ◽  
Giovanna Guidoboni ◽  
Mohamed Zaid ◽  
Lorenzo Sala ◽  
Salman Ahmad ◽  
...  

Purpose: This study proposes a novel approach to obtain personalized estimates of cardiovascular parameters by combining (i) electrocardiography and ballistocardiography for noninvasive cardiovascular monitoring, (ii) a physiology-based mathematical model for predicting personalized cardiovascular variables, and (iii) an evolutionary algorithm (EA) for searching optimal model parameters.Methods: Electrocardiogram (ECG), ballistocardiogram (BCG), and a total of six blood pressure measurements are recorded on three healthy subjects. The R peaks in the ECG are used to segment the BCG signal into single BCG curves for each heart beat. The time distance between R peaks is used as an input for a validated physiology-based mathematical model that predicts distributions of pressures and volumes in the cardiovascular system, along with the associated BCG curve. An EA is designed to search the generation of parameter values of the cardiovascular model that optimizes the match between model-predicted and experimentally-measured BCG curves. The physiological relevance of the optimal EA solution is evaluated a posteriori by comparing the model-predicted blood pressure with a cuff placed on the arm of the subjects to measure the blood pressure.Results: The proposed approach successfully captures amplitudes and timings of the most prominent peak and valley in the BCG curve, also known as the J peak and K valley. The values of cardiovascular parameters pertaining to ventricular function can be estimated by the EA in a consistent manner when the search is performed over five different BCG curves corresponding to five different heart-beats of the same subject. Notably, the blood pressure predicted by the physiology-based model with the personalized parameter values provided by the EA search exhibits a very good agreement with the cuff-based blood pressure measurement.Conclusion: The combination of EA with physiology-based modeling proved capable of providing personalized estimates of cardiovascular parameters and physiological variables of great interest, such as blood pressure. This novel approach opens the possibility for developing quantitative devices for noninvasive cardiovascular monitoring based on BCG sensing.


Author(s):  
Michael J. Mazzoleni ◽  
Claudio L. Battaglini ◽  
Brian P. Mann

This paper develops a nonlinear mathematical model to describe the heart rate response of an individual during cycling. The model is able to account for the fluctuations of an individual’s heart rate while they participate in exercise that varies in intensity. A method for estimating the model parameters using a genetic algorithm is presented and implemented, and the results show good agreement between the actual parameter values and the estimated values when tested using synthetic data.


2021 ◽  
Vol 17 (6) ◽  
pp. e1009072
Author(s):  
Catherine M. Byrne ◽  
Christine Johnston ◽  
Jackson Orem ◽  
Fred Okuku ◽  
Meei-Li Huang ◽  
...  

Epstein-Barr virus (EBV) is transmitted by saliva and is a major cause of cancer, particularly in people living with HIV/AIDS. Here, we describe the frequency and quantity of EBV detection in the saliva of Ugandan adults with and without HIV-1 infection and use these data to develop a novel mathematical model of EBV infection in the tonsils. Eligible cohort participants were not taking antiviral medications, and those with HIV-1 infection had a CD4 count >200 cells/mm3. Over a 4-week period, participants provided daily oral swabs that we analysed for the presence and quantity of EBV. Compared with HIV-1 uninfected participants, HIV-1 coinfected participants had an increased risk of EBV detection in their saliva (IRR = 1.27, 95% CI = 1.10–1.47) and higher viral loads in positive samples. We used these data to develop a stochastic, mechanistic mathematical model that describes the dynamics of EBV, infected cells, and immune response within the tonsillar epithelium to analyse potential factors that may cause EBV infection to be more severe in HIV-1 coinfected participants. The model, fit using Approximate Bayesian Computation, showed high fidelity to daily oral shedding data and matched key summary statistics. When evaluating how model parameters differed among participants with and without HIV-1 coinfection, results suggest HIV-1 coinfected individuals have higher rates of B cell reactivation, which can seed new infection in the tonsils and lower rates of an EBV-specific immune response. Subsequently, both these traits may explain higher and more frequent EBV detection in the saliva of HIV-1 coinfected individuals.


2021 ◽  
Author(s):  
Kathrin Menberg ◽  
Asal Bidarmaghz ◽  
Alastair Gregory ◽  
Ruchi Choudhary ◽  
Mark Girolami

<p>The increased use of the urban subsurface for multiple purposes, such as anthropogenic infrastructures and geothermal energy applications, leads to an urgent need for large-scale sophisticated modelling approaches for coupled mass and heat transfer. However, such models are subject to large uncertainties in model parameters, the physical model itself and in available measured data, which is often rare. Thus, the robustness and reliability of the computer model and its outcomes largely depend on successful parameter estimation and model calibration, which are often hampered by the computational burden of large-scale coupled models.</p><p>To tackle this problem, we present a novel Bayesian approach for parameter estimation, which allows to account for different sources of uncertainty, is capable of dealing with sparse field data and makes optimal use of the output data from computationally expensive numerical model runs. This is achieved by combining output data from different models that represent the same physical problem, but at different levels of fidelity, e.g. reflected by different spatial resolution, i.e. different model discretization. Our framework combines information from a few parametric model outputs from a physically accurate, but expensive, high-fidelity computer model, with a larger number of evaluations from a less expensive and less accurate low-fidelity model. This enables us to include accurate information about the model output at sparse points in the parameter space, as well as dense samples across the entire parameter space, albeit with a lower physical accuracy.</p><p>We first apply the multi-fidelity approach to a simple 1D analytical heat transfer model, and secondly on a semi-3D coupled mass and heat transport numerical model, and estimate the unknown model parameters. By using synthetic data generated with known parameter values, we are able to test the reliability of the new method, as well as the improved performance over a single-fidelity approach, under different framework settings. Overall, the results from the analytical and numerical model show that combining 50 runs of the low resolution model with data from only 10 runs of a higher resolution model significantly improves the posterior distribution results, both in terms of agreement with the true parameter values and the confidence interval around this value. The next steps for further testing of the method are employing real data from field measurements and adding statistical formulations for model calibration and prediction based on the inferred posterior distributions of the estimated parameters.</p>


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