Gibberellins Regulate Lateral Root Development that is Associated with Auxin and Cell Wall Metabolisms in Cucumber
Abstract Background: Cucumber is an economically important crop cultivated worldwide. However, it is susceptible to various stresses due to weak and shallow root systems, limiting its productivity. Lateral roots (LRs) are critical for plant stress tolerance and productivity. Increasing evidence showed that gibberellins (GAs) play important roles, positively or negatively, in LR development in many plants. Therefore, it is of great importance for cucumber production to study the role of GAs in LR development. Results: The application of various concentrations of GA3 and uniconazole, a GA biosynthesis inhibitor, on germinated cucumber seeds for 5 days showed that GAs regulated cucumber LR development in a concentration-dependent manner. 1 µM, 10 µM, 50 µM and 100 µM GA3 significantly increased secondary root length, tertiary root number and length. It is worthy note that 50 µM GA3 treatment showed strong effects in increasing root dry weight and the root/shoot dry weight ratio. Pairwise comparisons between GA3-treated roots and Control at 2, 3 and 5 days after germination (DAG) identified 417 down-regulated genes enriched for GA metabolism-related processes and 447 up-regulated genes enriched for cell wall metabolism-related processes in GA3-treated roots. Linear factorial modeling was also performed to systematically identify DEGs and a total of 3523 non-redundant DEGs were identified in our RNA-seq data. Of these, most of the genes involved in auxin and cell wall metabolisms were up-regulated in GA3-treated roots. Conclusions: GAs positively regulate LR development in cucumber putatively associated with enhanced IAA and cell wall metabolisms. Our findings not only shed light on LR regulation mediated by GA but also offer an important resource for functional studies of candidate genes putatively involved in the regulation of LR development in cucumber and other crops.