scholarly journals Novel Surveillance of Occupational Injury Powered by Machine Learning Using Chief Complaint at Emergency Triage

2020 ◽  
Author(s):  
Ting-Chia Weng ◽  
Yu-Ting Wei ◽  
Tsung-Yu Chan ◽  
Wen-Chau Chen ◽  
Ming-Hong Chen ◽  
...  
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Medical Information ◽  
Occupational Injuries ◽  
Medical Center ◽  
Chief Complaint ◽  
Supervised Machine Learning ◽  
Training Dataset ◽  
Reimbursement Rate ◽  
Chief Complaints

Abstract Background: Underreporting of occupational injuries remains a global health issue, and warrants social awareness. To assist surveillance of occupational injuries, we developed an automatic screening model using chief complaint at emergency department to improve detection and reporting of occupational injuries.Methods: A total of 181,843 emergency visits aged 15 to 65 year-old were included at a medical center in Taiwan from April, 2015 to March, 2018. The retrospective cohort composed of 9,307 cases of occupational injuries and 172,536 controls. We applied the first 30 months as training dataset, and the following 6 months for prospective testing. Natural Language Processing (NLP) was applied to analyze patients’ chief complaints. The sentences were processed by JiebaR, a Chinese text segmentation technique, reviewed by two occupational physicians, and transformed by a word-embedding model using Glove. Logistic regression was conducted to predict suspected cases of occupational injuries.Results: The prediction model using the chief complaint alone can achieve an overall AUC of 0.936 [95% confidence interval (CI): 0.931 to 0.941], with high sensitivity (93.1%, 95% CI: 91.8 to 94.4) and adequate specificity (84.8%, 95% CI: 84.4 to 85.2). Patients in the most urgent or severe conditions showed the highest accuracy around 90%. We also observed increasing trends of referral to specialists of occupational medicine, and reimbursement rate.Conclusions: Interdepartmental coordination and integration of machine learning may augment the detection of occupational injuries at the emergency triage and improve the reporting, compensation, and prevention of occupational injuries.Contributions to the literaturel This novel surveillance powered by supervised machine learning can help to identify occupational injuries at the emergency triage, and it achieves 93.1% sensitivity and 84.8% specificity.l Along with the system implementation, there are trends of increasing reimbursement rate in the National Labor Insurance and increasing case referrals to specialists of occupational medicine.l Combining the use of Artificial Intelligence (AI) with conventional medical information, such as chief complaints, may provide an effective surveillance system for occupational injuries at hospitals. l Effective screening of labors who suffer from occupational injuries will promote Total Worker Health.

Mol2vec: Unsupervised Machine Learning Approach with Chemical Intuition

2017 ◽  
Author(s):  
Sabrina Jaeger ◽  
Simone Fulle ◽  
Samo Turk
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Supervised Machine Learning ◽  
Learning Approach ◽  
Learning Approaches ◽  
Unsupervised Machine Learning ◽  
Feature Representations ◽  
Machine Learning Approach ◽  
The Individual ◽  
Vector Representations

Inspired by natural language processing techniques we here introduce Mol2vec which is an unsupervised machine learning approach to learn vector representations of molecular substructures. Similarly, to the Word2vec models where vectors of closely related words are in close proximity in the vector space, Mol2vec learns vector representations of molecular substructures that are pointing in similar directions for chemically related substructures. Compounds can finally be encoded as vectors by summing up vectors of the individual substructures and, for instance, feed into supervised machine learning approaches to predict compound properties. The underlying substructure vector embeddings are obtained by training an unsupervised machine learning approach on a so-called corpus of compounds that consists of all available chemical matter. The resulting Mol2vec model is pre-trained once, yields dense vector representations and overcomes drawbacks of common compound feature representations such as sparseness and bit collisions. The prediction capabilities are demonstrated on several compound property and bioactivity data sets and compared with results obtained for Morgan fingerprints as reference compound representation. Mol2vec can be easily combined with ProtVec, which employs the same Word2vec concept on protein sequences, resulting in a proteochemometric approach that is alignment independent and can be thus also easily used for proteins with low sequence similarities.

Digging for the truth: the case for active annotation in evaluating the credibility of online medical information (Preprint)

2020 ◽  
Author(s):  
Mikołaj Morzy ◽  
Bartłomiej Balcerzak ◽  
Adam Wierzbicki ◽  
Adam Wierzbicki
Keyword(s):  
Machine Learning ◽  
Medical Information ◽  
Representation Learning ◽  
Training Dataset ◽  
Highly Qualified ◽  
Human In The Loop ◽  
Annotation Process ◽  
Comprehensive Framework ◽  
Online Sources ◽  
The Web

BACKGROUND With the rapidly accelerating spread of dissemination of false medical information on the Web, the task of establishing the credibility of online sources of medical information becomes a pressing necessity. The sheer number of websites offering questionable medical information presented as reliable and actionable suggestions with possibly harmful effects poses an additional requirement for potential solutions, as they have to scale to the size of the problem. Machine learning is one such solution which, when properly deployed, can be an effective tool in fighting medical disinformation on the Web. OBJECTIVE We present a comprehensive framework for designing and curating of machine learning training datasets for online medical information credibility assessment. We show how the annotation process should be constructed and what pitfalls should be avoided. Our main objective is to provide researchers from medical and computer science communities with guidelines on how to construct datasets for machine learning models for various areas of medical information wars. METHODS The key component of our approach is the active annotation process. We begin by outlining the annotation protocol for the curation of high-quality training dataset, which then can be augmented and rapidly extended by employing the human-in-the-loop paradigm to machine learning training. To circumvent the cold start problem of insufficient gold standard annotations, we propose a pre-processing pipeline consisting of representation learning, clustering, and re-ranking of sentences for the acceleration of the training process and the optimization of human resources involved in the annotation. RESULTS We collect over 10 000 annotations of sentences related to selected subjects (psychiatry, cholesterol, autism, antibiotics, vaccines, steroids, birth methods, food allergy testing) for less than $7 000 employing 9 highly qualified annotators (certified medical professionals) and we release this dataset to the general public. We develop an active annotation framework for more efficient annotation of non-credible medical statements. The results of the qualitative analysis support our claims of the efficacy of the presented method. CONCLUSIONS A set of very diverse incentives is driving the widespread dissemination of medical disinformation on the Web. An effective strategy of countering this spread is to use machine learning for automatically establishing the credibility of online medical information. This, however, requires a thoughtful design of the training pipeline. In this paper we present a comprehensive framework of active annotation. In addition, we publish a large curated dataset of medical statements labelled as credible, non-credible, or neutral.

scholarly journals Obtaining Knowledge in Pathology Reports Through a Natural Language Processing Approach With Classification, Named-Entity Recognition, and Relation-Extraction Heuristics

2019 ◽  
pp. 1-8 ◽  
Author(s):  
Tomasz Oliwa ◽  
Steven B. Maron ◽  
Leah M. Chase ◽  
Samantha Lomnicki ◽  
Daniel V.T. Catenacci ◽  
...  
Keyword(s):  
Machine Learning ◽  
Natural Language Processing ◽  
Natural Language ◽  
Language Processing ◽  
Named Entity Recognition ◽  
Entity Recognition ◽  
Classification Model ◽  
Supervised Machine Learning ◽  
Named Entity ◽  
Pathology Reports

PURPOSE Robust institutional tumor banks depend on continuous sample curation or else subsequent biopsy or resection specimens are overlooked after initial enrollment. Curation automation is hindered by semistructured free-text clinical pathology notes, which complicate data abstraction. Our motivation is to develop a natural language processing method that dynamically identifies existing pathology specimen elements necessary for locating specimens for future use in a manner that can be re-implemented by other institutions. PATIENTS AND METHODS Pathology reports from patients with gastroesophageal cancer enrolled in The University of Chicago GI oncology tumor bank were used to train and validate a novel composite natural language processing-based pipeline with a supervised machine learning classification step to separate notes into internal (primary review) and external (consultation) reports; a named-entity recognition step to obtain label (accession number), location, date, and sublabels (block identifiers); and a results proofreading step. RESULTS We analyzed 188 pathology reports, including 82 internal reports and 106 external consult reports, and successfully extracted named entities grouped as sample information (label, date, location). Our approach identified up to 24 additional unique samples in external consult notes that could have been overlooked. Our classification model obtained 100% accuracy on the basis of 10-fold cross-validation. Precision, recall, and F1 for class-specific named-entity recognition models show strong performance. CONCLUSION Through a combination of natural language processing and machine learning, we devised a re-implementable and automated approach that can accurately extract specimen attributes from semistructured pathology notes to dynamically populate a tumor registry.

scholarly journals On the Unfounded Enthusiasm for Soft Selective Sweeps III: The Supervised Machine Learning Algorithm That Isn’t

Genes ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 527
Author(s):  
Eran Elhaik ◽  
Dan Graur
Keyword(s):  
Machine Learning ◽  
Learning Algorithm ◽  
A Priori ◽  
Neutral Theory ◽  
Dominant Mode ◽  
Supervised Machine Learning ◽  
Training Dataset ◽  
Selective Sweeps ◽  
Two Factors ◽  
Negative Controls

In the last 15 years or so, soft selective sweep mechanisms have been catapulted from a curiosity of little evolutionary importance to a ubiquitous mechanism claimed to explain most adaptive evolution and, in some cases, most evolution. This transformation was aided by a series of articles by Daniel Schrider and Andrew Kern. Within this series, a paper entitled “Soft sweeps are the dominant mode of adaptation in the human genome” (Schrider and Kern, Mol. Biol. Evolut. 2017, 34(8), 1863–1877) attracted a great deal of attention, in particular in conjunction with another paper (Kern and Hahn, Mol. Biol. Evolut. 2018, 35(6), 1366–1371), for purporting to discredit the Neutral Theory of Molecular Evolution (Kimura 1968). Here, we address an alleged novelty in Schrider and Kern’s paper, i.e., the claim that their study involved an artificial intelligence technique called supervised machine learning (SML). SML is predicated upon the existence of a training dataset in which the correspondence between the input and output is known empirically to be true. Curiously, Schrider and Kern did not possess a training dataset of genomic segments known a priori to have evolved either neutrally or through soft or hard selective sweeps. Thus, their claim of using SML is thoroughly and utterly misleading. In the absence of legitimate training datasets, Schrider and Kern used: (1) simulations that employ many manipulatable variables and (2) a system of data cherry-picking rivaling the worst excesses in the literature. These two factors, in addition to the lack of negative controls and the irreproducibility of their results due to incomplete methodological detail, lead us to conclude that all evolutionary inferences derived from so-called SML algorithms (e.g., S/HIC) should be taken with a huge shovel of salt.

Intelligent Molecular Identification for High Performance Organosulfide Capture Using Active Machine Learning Algorithm

2021 ◽  
Author(s):  
Yuxiang Chen ◽  
Chuanlei Liu ◽  
Yang An ◽  
Yue Lou ◽  
Yang Zhao ◽  
...  
Keyword(s):  
Machine Learning ◽  
Similarity Search ◽  
Data Science ◽  
Molecular Similarity ◽  
Molecular Design ◽  
Supervised Machine Learning ◽  
Training Dataset ◽  
Methyl Mercaptan ◽  
Model Framework ◽  
Modeling Framework

Machine learning and computer-aided approaches significantly accelerate molecular design and discovery in scientific and industrial fields increasingly relying on data science for efficiency. The typical method used is supervised learning which needs huge datasets. Semi-supervised machine learning approaches are effective to train unlabeled data with improved modeling performance, whereas they are limited by the accumulation of prediction errors. Here, to screen solvents for removal of methyl mercaptan, a type of organosulfur impurities in natural gas, we constructed a computational framework by integrating molecular similarity search and active learning methods, namely, molecular active selection machine learning (MASML). This new model framework identifies the optimal molecules set by molecular similarity search and iterative addition to the training dataset. Among all 126,068 compounds in the initial dataset, 3 molecules were identified to be promising for methyl mercaptan (MeSH) capture, including benzylamine (BZA), p-methoxybenzylamine (PZM), and N,N-diethyltrimethylenediamine (DEAPA). Further experiments confirmed the effectiveness of our modeling framework in efficient molecular design and identification for capturing methyl mercaptan, in which DEAPA presents a Henry's law constant 89.4% lower than that of methyl diethanolamine (MDEA).

Using Supervised Machine Learning Algorithms for Automated Lithology Prediction from Wireline Log Data

2021 ◽  
Author(s):  
Marian Popescu ◽  
Rebecca Head ◽  
Tim Ferriday ◽  
Kate Evans ◽  
Jose Montero ◽  
...  
Keyword(s):  
Machine Learning ◽  
Learning Algorithm ◽  
Machine Learning Algorithms ◽  
Supervised Machine Learning ◽  
Training Dataset ◽  
Depth Interval ◽  
Log Data ◽  
Machine Learning Approach ◽  
Lithology Prediction ◽  
Logging While Drilling

Abstract This paper presents advancements in machine learning and cloud deployment that enable rapid and accurate automated lithology interpretation. A supervised machine learning technique is described that enables rapid, consistent, and accurate lithology prediction alongside quantitative uncertainty from large wireline or logging-while-drilling (LWD) datasets. To leverage supervised machine learning, a team of geoscientists and petrophysicists made detailed lithology interpretations of wells to generate a comprehensive training dataset. Lithology interpretations were based on applying determinist cross-plotting by utilizing and combining various raw logs. This training dataset was used to develop a model and test a machine learning pipeline. The pipeline was applied to a dataset previously unseen by the algorithm, to predict lithology. A quality checking process was performed by a petrophysicist to validate new predictions delivered by the pipeline against human interpretations. Confidence in the interpretations was assessed in two ways. The prior probability was calculated, a measure of confidence in the input data being recognized by the model. Posterior probability was calculated, which quantifies the likelihood that a specified depth interval comprises a given lithology. The supervised machine learning algorithm ensured that the wells were interpreted consistently by removing interpreter biases and inconsistencies. The scalability of cloud computing enabled a large log dataset to be interpreted rapidly; >100 wells were interpreted consistently in five minutes, yielding >70% lithological match to the human petrophysical interpretation. Supervised machine learning methods have strong potential for classifying lithology from log data because: 1) they can automatically define complex, non-parametric, multi-variate relationships across several input logs; and 2) they allow classifications to be quantified confidently. Furthermore, this approach captured the knowledge and nuances of an interpreter's decisions by training the algorithm using human-interpreted labels. In the hydrocarbon industry, the quantity of generated data is predicted to increase by >300% between 2018 and 2023 (IDC, Worldwide Global DataSphere Forecast, 2019–2023). Additionally, the industry holds vast legacy data. This supervised machine learning approach can unlock the potential of some of these datasets by providing consistent lithology interpretations rapidly, allowing resources to be used more effectively.

Machine Learning Techniques Application

2021 ◽  
pp. 1396-1417
Author(s):  
Karthikeyan P. ◽  
Karunakaran Velswamy ◽  
Pon Harshavardhanan ◽  
Rajagopal R. ◽  
JeyaKrishnan V. ◽  
...  
Keyword(s):  
Machine Learning ◽  
Language Processing ◽  
Character Recognition ◽  
Optical Character Recognition ◽  
Supervised Machine Learning ◽  
Machine Learning Techniques ◽  
Modern World ◽  
Interdisciplinary Field ◽  
Sound Image ◽  
Learning Techniques

Machine learning is the part of artificial intelligence that makes machines learn without being expressly programmed. Machine learning application built the modern world. Machine learning techniques are mainly classified into three techniques: supervised, unsupervised, and semi-supervised. Machine learning is an interdisciplinary field, which can be joined in different areas including science, business, and research. Supervised techniques are applied in agriculture, email spam, malware filtering, online fraud detection, optical character recognition, natural language processing, and face detection. Unsupervised techniques are applied in market segmentation and sentiment analysis and anomaly detection. Deep learning is being utilized in sound, image, video, time series, and text. This chapter covers applications of various machine learning techniques, social media, agriculture, and task scheduling in a distributed system.

scholarly journals Towards scaling Twitter for digital epidemiology of birth defects

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Ari Z. Klein ◽  
Abeed Sarker ◽  
Davy Weissenbacher ◽  
Graciela Gonzalez-Hernandez
Keyword(s):  
Machine Learning ◽  
Social Media ◽  
Language Processing ◽  
Birth Defects ◽  
Birth Defect ◽  
Learning Algorithms ◽  
Class Imbalance ◽  
Machine Learning Algorithms ◽  
Supervised Machine Learning ◽  
Svm Classifier

Abstract Social media has recently been used to identify and study a small cohort of Twitter users whose pregnancies with birth defect outcomes—the leading cause of infant mortality—could be observed via their publicly available tweets. In this study, we exploit social media on a larger scale by developing natural language processing (NLP) methods to automatically detect, among thousands of users, a cohort of mothers reporting that their child has a birth defect. We used 22,999 annotated tweets to train and evaluate supervised machine learning algorithms—feature-engineered and deep learning-based classifiers—that automatically distinguish tweets referring to the user’s pregnancy outcome from tweets that merely mention birth defects. Because 90% of the tweets merely mention birth defects, we experimented with under-sampling and over-sampling approaches to address this class imbalance. An SVM classifier achieved the best performance for the two positive classes: an F1-score of 0.65 for the “defect” class and 0.51 for the “possible defect” class. We deployed the classifier on 20,457 unlabeled tweets that mention birth defects, which helped identify 542 additional users for potential inclusion in our cohort. Contributions of this study include (1) NLP methods for automatically detecting tweets by users reporting their birth defect outcomes, (2) findings that an SVM classifier can outperform a deep neural network-based classifier for highly imbalanced social media data, (3) evidence that automatic classification can be used to identify additional users for potential inclusion in our cohort, and (4) a publicly available corpus for training and evaluating supervised machine learning algorithms.

scholarly journals Measuring Biomechanical Risk in Lifting Load Tasks Through Wearable System and Machine-Learning Approach

Sensors ◽  
2020 ◽  
Vol 20 (6) ◽  
pp. 1557 ◽  
Author(s):  
Ilaria Conforti ◽  
Ilaria Mileti ◽  
Zaccaria Del Prete ◽  
Eduardo Palermo
Keyword(s):  
Machine Learning ◽  
Material Handling ◽  
Learning Algorithm ◽  
Occupational Injuries ◽  
Wearable Sensors ◽  
High Stress ◽  
Machine Learning Algorithms ◽  
Supervised Machine Learning ◽  
Support Vector ◽  
Kinematic Parameters

Ergonomics evaluation through measurements of biomechanical parameters in real time has a great potential in reducing non-fatal occupational injuries, such as work-related musculoskeletal disorders. Assuming a correct posture guarantees the avoidance of high stress on the back and on the lower extremities, while an incorrect posture increases spinal stress. Here, we propose a solution for the recognition of postural patterns through wearable sensors and machine-learning algorithms fed with kinematic data. Twenty-six healthy subjects equipped with eight wireless inertial measurement units (IMUs) performed manual material handling tasks, such as lifting and releasing small loads, with two postural patterns: correctly and incorrectly. Measurements of kinematic parameters, such as the range of motion of lower limb and lumbosacral joints, along with the displacement of the trunk with respect to the pelvis, were estimated from IMU measurements through a biomechanical model. Statistical differences were found for all kinematic parameters between the correct and the incorrect postures (p < 0.01). Moreover, with the weight increase of load in the lifting task, changes in hip and trunk kinematics were observed (p < 0.01). To automatically identify the two postures, a supervised machine-learning algorithm, a support vector machine, was trained, and an accuracy of 99.4% (specificity of 100%) was reached by using the measurements of all kinematic parameters as features. Meanwhile, an accuracy of 76.9% (specificity of 76.9%) was reached by using the measurements of kinematic parameters related to the trunk body segment.

scholarly journals Assessing the Heterogeneity of Complaints Related to Tinnitus and Hyperacusis from an Unsupervised Machine Learning Approach: An Exploratory Study

2020 ◽  
Vol 25 (4) ◽  
pp. 174-189 ◽  
Author(s):  
Guillaume  Palacios ◽  
Arnaud Noreña ◽  
Alain Londero
Keyword(s):  
Machine Learning ◽  
Statistical Analysis ◽  
Language Processing ◽  
Exploratory Study ◽  
Latent Dirichlet Allocation ◽  
Suicide Attempts ◽  
Real Life ◽  
Supervised Machine Learning ◽  
Learning Approach ◽  
Machine Learning Approach

Introduction: Subjective tinnitus (ST) and hyperacusis (HA) are common auditory symptoms that may become incapacitating in a subgroup of patients who thereby seek medical advice. Both conditions can result from many different mechanisms, and as a consequence, patients may report a vast repertoire of associated symptoms and comorbidities that can reduce dramatically the quality of life and even lead to suicide attempts in the most severe cases. The present exploratory study is aimed at investigating patients’ symptoms and complaints using an in-depth statistical analysis of patients’ natural narratives in a real-life environment in which, thanks to the anonymization of contributions and the peer-to-peer interaction, it is supposed that the wording used is totally free of any self-limitation and self-censorship. Methods: We applied a purely statistical, non-supervised machine learning approach to the analysis of patients’ verbatim exchanged on an Internet forum. After automated data extraction, the dataset has been preprocessed in order to make it suitable for statistical analysis. We used a variant of the Latent Dirichlet Allocation (LDA) algorithm to reveal clusters of symptoms and complaints of HA patients (topics). The probability of distribution of words within a topic uniquely characterizes it. The convergence of the log-likelihood of the LDA-model has been reached after 2,000 iterations. Several statistical parameters have been tested for topic modeling and word relevance factor within each topic. Results: Despite a rather small dataset, this exploratory study demonstrates that patients’ free speeches available on the Internet constitute a valuable material for machine learning and statistical analysis aimed at categorizing ST/HA complaints. The LDA model with K = 15 topics seems to be the most relevant in terms of relative weights and correlations with the capability to individualizing subgroups of patients displaying specific characteristics. The study of the relevance factor may be useful to unveil weak but important signals that are present in patients’ narratives. Discussion/Conclusion: We claim that the LDA non-supervised approach would permit to gain knowledge on the patterns of ST- and HA-related complaints and on patients’ centered domains of interest. The merits and limitations of the LDA algorithms are compared with other natural language processing methods and with more conventional methods of qualitative analysis of patients’ output. Future directions and research topics emerging from this innovative algorithmic analysis are proposed.

Sign in / Sign up

Export Citation Format

Share Document