scholarly journals Palpation Localization of Radial Artery Based on 3-Dimensional Convolutional Neural Networks

2021 ◽  
Author(s):  
Qiliang Chen ◽  
Yulin Huang ◽  
JingJing Luo ◽  
Jiacheng Yang ◽  
Hong Lu ◽  
...  
Keyword(s):  
Neural Networks ◽  
Radial Artery ◽  
Near Infrared ◽  
Superior Performance ◽  
Pulse Diagnosis ◽  
3 Dimensional ◽  
Temporal Features ◽  
Pulse Waves ◽  
Third Dimension ◽  
3D Cnn

Abstract Palpation localization is essential for detecting physiological parameters of the radial artery for pulse diagnosis of Traditional Chinese Medicine (TCM). Detecting signal or applying pressure at the wrong location can seriously affect the measurement of pulse waves and result in misdiagnosis. In this paper, we propose an effective and high accuracy regression model using 3-dimensional convolution neural networks (CNN) processing near-infrared picture sequences to locate radial artery upon radius at the wrist. Comparing with early studies using 2-dimensional models, 3D CNN introduces temporal features with the third dimension to leverage pulsation rhythms. The model had achieved superior performance accuracy as 0.87 within 50 pixels at picture resolution of 2048*1088. Model visualization shows that the additional dimension of the temporal convolution highlights dynamic changes within image sequences. This study presents the great potential of our constructed model to be applied in real wrist palpation location scenarios to bring the key convenience for pulse diagnosis.

scholarly journals Effects of Five Daily Activities on Harmonic Analysis of the Radial Pulse

2020 ◽  
Vol 2020 ◽  
pp. 1-5
Author(s):  
Pan-Jen Chen ◽  
Han-Kuei Wu ◽  
Po-Chi Hsu ◽  
Lun-Chien Lo ◽  
Hen-Hong Chang ◽  
...  
Keyword(s):  
Radial Artery ◽  
Pulse Signal ◽  
The Body ◽  
Daily Activities ◽  
Radial Pulse ◽  
Pulse Diagnosis ◽  
Before And After ◽  
Pulse Waves ◽  
High Level ◽  
Fast Fourier Analysis

All daily physiological activities have some effects on the body, and traditional Chinese medicine believes that pulse diagnosis can reflect the circulation of qi and blood throughout the body. This study aimed to explore the effects of five physiological activities, namely, sleep, exercise, ingestion, defecation, and shower, on pulse waves of the radial artery. Thirty test subjects were recruited for the study, and a wearable pulse signal measurement device was used for self-measurement of radial artery pulses before and after various physiological activities. All collected data were subjected to fast Fourier analysis, which transformed each wave from its time domain to frequency domain of 10 harmonics to describe the changes in pulse waves. The results were as follows: exercise and sleep had larger but opposite effects on the pulse waves; defecation and sleep relaxed the body and had the same trend of effect on the pulse waves. Both exercise and ingestion require energy to proceed, and both exert a burden on the body, and the pulse waves showed the same trend of changes. In contrast, shower had a little effect on the pulse waves. Preliminary observation in this study showed that relaxation of the body could increase high-level harmonics, whereas stress could increase low-level harmonics. Further studies are warranted to unravel the physiological significance of this finding.

scholarly journals Deep convolutional neural networks for cardiovascular vulnerable plaque detection

2019 ◽  
Vol 277 ◽  
pp. 02024 ◽  
Author(s):  
Lincan Li ◽  
Tong Jia ◽  
Tianqi Meng ◽  
Yizhe Liu
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Networks ◽  
Vulnerable Plaque ◽  
Recall Rate ◽  
Superior Performance ◽  
Learning Approaches ◽  
Deep Convolutional Neural Networks ◽  
Vulnerable Plaques ◽  
Plaque Detection

In this paper, an accurate two-stage deep learning method is proposed to detect vulnerable plaques in ultrasonic images of cardiovascular. Firstly, a Fully Convonutional Neural Network (FCN) named U-Net is used to segment the original Intravascular Optical Coherence Tomography (IVOCT) cardiovascular images. We experiment on different threshold values to find the best threshold for removing noise and background in the original images. Secondly, a modified Faster RCNN is adopted to do precise detection. The modified Faster R-CNN utilize six-scale anchors (122,162,322,642,1282,2562) instead of the conventional one scale or three scale approaches. First, we present three problems in cardiovascular vulnerable plaque diagnosis, then we demonstrate how our method solve these problems. The proposed method in this paper apply deep convolutional neural networks to the whole diagnostic procedure. Test results show the Recall rate, Precision rate, IoU (Intersection-over-Union) rate and Total score are 0.94, 0.885, 0.913 and 0.913 respectively, higher than the 1st team of CCCV2017 Cardiovascular OCT Vulnerable Plaque Detection Challenge. AP of the designed Faster RCNN is 83.4%, higher than conventional approaches which use one-scale or three-scale anchors. These results demonstrate the superior performance of our proposed method and the power of deep learning approaches in diagnose cardiovascular vulnerable plaques.

scholarly journals Deep Malaria Parasite Detection in Thin Blood Smear Microscopic Images

2021 ◽  
Vol 11 (5) ◽  
pp. 2284
Author(s):  
Asma Maqsood ◽  
Muhammad Shahid Farid ◽  
Muhammad Hassan Khan ◽  
Marcin Grzegorzek
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Red Blood Cells ◽  
Convolutional Neural Networks ◽  
Blood Cells ◽  
Superior Performance ◽  
Learning Models ◽  
Infected Female ◽  
The World ◽  
Augmentation Techniques

Malaria is a disease activated by a type of microscopic parasite transmitted from infected female mosquito bites to humans. Malaria is a fatal disease that is endemic in many regions of the world. Quick diagnosis of this disease will be very valuable for patients, as traditional methods require tedious work for its detection. Recently, some automated methods have been proposed that exploit hand-crafted feature extraction techniques however, their accuracies are not reliable. Deep learning approaches modernize the world with their superior performance. Convolutional Neural Networks (CNN) are vastly scalable for image classification tasks that extract features through hidden layers of the model without any handcrafting. The detection of malaria-infected red blood cells from segmented microscopic blood images using convolutional neural networks can assist in quick diagnosis, and this will be useful for regions with fewer healthcare experts. The contributions of this paper are two-fold. First, we evaluate the performance of different existing deep learning models for efficient malaria detection. Second, we propose a customized CNN model that outperforms all observed deep learning models. It exploits the bilateral filtering and image augmentation techniques for highlighting features of red blood cells before training the model. Due to image augmentation techniques, the customized CNN model is generalized and avoids over-fitting. All experimental evaluations are performed on the benchmark NIH Malaria Dataset, and the results reveal that the proposed algorithm is 96.82% accurate in detecting malaria from the microscopic blood smears.

scholarly journals An efficient pruning scheme of deep neural networks for Internet of Things applications

2021 ◽  
Vol 2021 (1) ◽  
Author(s):  
Chen Qi ◽  
Shibo Shen ◽  
Rongpeng Li ◽  
Zhifeng Zhao ◽  
Qing Liu ◽  
...  
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Internet Of Things ◽  
Deep Neural Networks ◽  
Computational Cost ◽  
Superior Performance ◽  
Compact Structure ◽  
Resource Limited ◽  
Benchmark Datasets ◽  
Iot Devices

AbstractNowadays, deep neural networks (DNNs) have been rapidly deployed to realize a number of functionalities like sensing, imaging, classification, recognition, etc. However, the computational-intensive requirement of DNNs makes it difficult to be applicable for resource-limited Internet of Things (IoT) devices. In this paper, we propose a novel pruning-based paradigm that aims to reduce the computational cost of DNNs, by uncovering a more compact structure and learning the effective weights therein, on the basis of not compromising the expressive capability of DNNs. In particular, our algorithm can achieve efficient end-to-end training that transfers a redundant neural network to a compact one with a specifically targeted compression rate directly. We comprehensively evaluate our approach on various representative benchmark datasets and compared with typical advanced convolutional neural network (CNN) architectures. The experimental results verify the superior performance and robust effectiveness of our scheme. For example, when pruning VGG on CIFAR-10, our proposed scheme is able to significantly reduce its FLOPs (floating-point operations) and number of parameters with a proportion of 76.2% and 94.1%, respectively, while still maintaining a satisfactory accuracy. To sum up, our scheme could facilitate the integration of DNNs into the common machine-learning-based IoT framework and establish distributed training of neural networks in both cloud and edge.

scholarly journals GraphBind: protein structural context embedded rules learned by hierarchical graph neural networks for recognizing nucleic-acid-binding residues

2021 ◽  
Author(s):  
Ying Xia ◽  
Chun-Qiu Xia ◽  
Xiaoyong Pan ◽  
Hong-Bin Shen
Keyword(s):  
Neural Networks ◽  
Nucleic Acid ◽  
Biological Activities ◽  
New Drugs ◽  
Superior Performance ◽  
Nucleic Acid Binding ◽  
Hierarchical Graph ◽  
Binding Residue ◽  
Binding Residues ◽  
Graph Neural Networks

Abstract Knowledge of the interactions between proteins and nucleic acids is the basis of understanding various biological activities and designing new drugs. How to accurately identify the nucleic-acid-binding residues remains a challenging task. In this paper, we propose an accurate predictor, GraphBind, for identifying nucleic-acid-binding residues on proteins based on an end-to-end graph neural network. Considering that binding sites often behave in highly conservative patterns on local tertiary structures, we first construct graphs based on the structural contexts of target residues and their spatial neighborhood. Then, hierarchical graph neural networks (HGNNs) are used to embed the latent local patterns of structural and bio-physicochemical characteristics for binding residue recognition. We comprehensively evaluate GraphBind on DNA/RNA benchmark datasets. The results demonstrate the superior performance of GraphBind than state-of-the-art methods. Moreover, GraphBind is extended to other ligand-binding residue prediction to verify its generalization capability. Web server of GraphBind is freely available at http://www.csbio.sjtu.edu.cn/bioinf/GraphBind/.

scholarly journals A Review of Algorithms and Hardware Implementations for Spiking Neural Networks

2021 ◽  
Vol 11 (2) ◽  
pp. 23
Author(s):  
Duy-Anh Nguyen ◽  
Xuan-Tu Tran ◽  
Francesca Iacopi
Keyword(s):  
Neural Networks ◽  
Computational Cost ◽  
Superior Performance ◽  
Training Algorithms ◽  
Current State ◽  
Hardware Implementations ◽  
Neuromorphic Hardware ◽  
High Level ◽  
Event Based ◽  
Hardware Platforms

Deep Learning (DL) has contributed to the success of many applications in recent years. The applications range from simple ones such as recognizing tiny images or simple speech patterns to ones with a high level of complexity such as playing the game of Go. However, this superior performance comes at a high computational cost, which made porting DL applications to conventional hardware platforms a challenging task. Many approaches have been investigated, and Spiking Neural Network (SNN) is one of the promising candidates. SNN is the third generation of Artificial Neural Networks (ANNs), where each neuron in the network uses discrete spikes to communicate in an event-based manner. SNNs have the potential advantage of achieving better energy efficiency than their ANN counterparts. While generally there will be a loss of accuracy on SNN models, new algorithms have helped to close the accuracy gap. For hardware implementations, SNNs have attracted much attention in the neuromorphic hardware research community. In this work, we review the basic background of SNNs, the current state and challenges of the training algorithms for SNNs and the current implementations of SNNs on various hardware platforms.

scholarly journals Molecular imaging and deep learning analysis of uMUC1 expression in response to chemotherapy in an orthotopic model of ovarian cancer

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Hongwei Zhao ◽  
Hasaan Hayat ◽  
Xiaohong Ma ◽  
Daguang Fan ◽  
Ping Wang ◽  
...  
Keyword(s):  
Neural Networks ◽  
Ovarian Cancer ◽  
Deep Learning ◽  
Cancer Progression ◽  
In Vivo Imaging ◽  
Near Infrared ◽  
Response To Therapy ◽  
Response To Chemotherapy

Abstract Artificial Intelligence (AI) algorithms including deep learning have recently demonstrated remarkable progress in image-recognition tasks. Here, we utilized AI for monitoring the expression of underglycosylated mucin 1 (uMUC1) tumor antigen, a biomarker for ovarian cancer progression and response to therapy, using contrast-enhanced in vivo imaging. This was done using a dual-modal (magnetic resonance and near infrared optical imaging) uMUC1-specific probe (termed MN-EPPT) consisted of iron-oxide magnetic nanoparticles (MN) conjugated to a uMUC1-specific peptide (EPPT) and labeled with a near-infrared fluorescent dye, Cy5.5. In vitro studies performed in uMUC1-expressing human ovarian cancer cell line SKOV3/Luc and control uMUC1low ES-2 cells showed preferential uptake on the probe by the high expressor (n = 3, p < .05). A decrease in MN-EPPT uptake by SKOV3/Luc cells in vitro due to uMUC1 downregulation after docetaxel therapy was paralleled by in vivo imaging studies that showed a reduction in probe accumulation in the docetaxel treated group (n = 5, p < .05). The imaging data were analyzed using deep learning-enabled segmentation and quantification of the tumor region of interest (ROI) from raw input MRI sequences by applying AI algorithms including a blend of Convolutional Neural Networks (CNN) and Fully Connected Neural Networks. We believe that the algorithms used in this study have the potential to improve studying and monitoring cancer progression, amongst other diseases.

scholarly journals Driving Stress Detection Using Multimodal Convolutional Neural Networks with Nonlinear Representation of Short-Term Physiological Signals

Sensors ◽  
2021 ◽  
Vol 21 (7) ◽  
pp. 2381
Author(s):  
Jaewon Lee ◽  
Hyeonjeong Lee ◽  
Miyoung Shin
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Traffic Accidents ◽  
Physiological Signals ◽  
Superior Performance ◽  
Short Term ◽  
Input Signals ◽  
Skin Response ◽  
Novel Method ◽  
Fully Connected

Mental stress can lead to traffic accidents by reducing a driver’s concentration or increasing fatigue while driving. In recent years, demand for methods to detect drivers’ stress in advance to prevent dangerous situations increased. Thus, we propose a novel method for detecting driving stress using nonlinear representations of short-term (30 s or less) physiological signals for multimodal convolutional neural networks (CNNs). Specifically, from hand/foot galvanic skin response (HGSR, FGSR) and heart rate (HR) short-term input signals, first, we generate corresponding two-dimensional nonlinear representations called continuous recurrence plots (Cont-RPs). Second, from the Cont-RPs, we use multimodal CNNs to automatically extract FGSR, HGSR, and HR signal representative features that can effectively differentiate between stressed and relaxed states. Lastly, we concatenate the three extracted features into one integrated representation vector, which we feed to a fully connected layer to perform classification. For the evaluation, we use a public stress dataset collected from actual driving environments. Experimental results show that the proposed method demonstrates superior performance for 30-s signals, with an overall accuracy of 95.67%, an approximately 2.5–3% improvement compared with that of previous works. Additionally, for 10-s signals, the proposed method achieves 92.33% classification accuracy, which is similar to or better than the performance of other methods using long-term signals (over 100 s).

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