scholarly journals Assessing Nitrogen and Potassium Deficiencies in Olive Orchards through Discriminant Analysis of Hyperspectral Data

2007 ◽  
Vol 132 (5) ◽  
pp. 611-618 ◽  
Author(s):  
M. Teresa Gómez-Casero ◽  
Francisca López-Granados ◽  
José M. Peña-Barragán ◽  
Montserrat Jurado-Expósito ◽  
Luis García-Torres ◽  
...  

Hyperspectral reflectance curves of olive (Olea europaea L.) trees under different N or K treatments, and the best wavelengths or vegetation indices to discriminate between different N or K applications using discriminant analysis were investigated. Field hyperspectral studies were carried out in two olive orchards located at Cabra and Lucena (southern Spain) for N and K experiments, respectively, in 2004 and 2005. At Cabra, olive trees have been fertilized since 1993, and annual applications of N per tree consisted of 0 kg (N0), 0.5 kg [N1 (normal)], or 1 kg [N2 (high)]. At Lucena, olive trees were fertilized since 1997, with 0%, 2.5%, and 5% K2CO3. Hyperspectral measurements were collected for each N and K treatments using a handheld field spectroradiometer (spectral range, 400–900 nm) in July of both years. To determine the nutritional status, a leaf analysis was carried out in July 2004 and 2005 at both locations. At Cabra, leaf N concentrations under N0 treatment were below the critical threshold, indicating nutritional deficiencies. Reflectance curves corresponding to N1 and N2 showed higher reflectance values in the near-infrared (NIR) plateau than N0 treatments. Wavelengths within the NIR region (from 710–900 nm) were selected in both years for discriminating between N treatments, with an overall accuracy of up to 99.2%. At Lucena, when K was not applied, leaf K content was below the critical threshold, indicating that olive trees were under a nutritional deficiency. Wavelengths from 710 to 890 nm, and the normalized difference vegetation index {NDVI = [(R780 – R670)/(R780 + R670]} were selected for discriminating K treatments with an overall accuracy of up to 94.4%. Classification matrices for cross-validation classified and misclassified cases into the nearest category. The results suggest that the induction of N or K nutritional deficiency for more than 10 years in olive trees resulted in different leaf nutrient contents, and this consistently affected hyperspectral reflectance curves, mainly in the NIR region. These results are promising and could provide information for further work on the identification of N- or K-deficient olive trees using remote sensing.

2020 ◽  
Vol 12 (17) ◽  
pp. 2677
Author(s):  
Maya Deepak ◽  
Sarita Keski-Saari ◽  
Laure Fauch ◽  
Lars Granlund ◽  
Elina Oksanen ◽  
...  

The goal of this study was to investigate the variation in the leaf spectral reflectance and its association with other leaf traits from 12 genotypes among three provenances of origin (populations) in a common garden for Finnish silver birch trees in 2015 and 2016. The spectral reflectance was measured in the laboratory from the detached leaves in the wavelength range of visible and near-infrared (VNIR, 400–1000 nm) and shortwave infrared (SWIR, 1000–2500 nm). The variation among the provenance was initially visualized with principal component analysis (PCA) and a clear separation among the provenances was detected with the discriminant analysis of principal components (DAPC) and partial least squares discriminant analysis (PLS-DA) depicting a less strong variation among the genotypes within the provenances. Wavelengths contributing to the separation of the genotypes and provenances were identified from the contribution plot of DAPC and the red edge was strongly related to the differences. Chlorophyll content showed clear provenance variation and was associated with the separation among the genotypes and provenances in the DAPC space. The normalized difference vegetation index (NDVI705,750) and chlorophyll reflectance index (CRI) showed clear significance among the provenances, whereas NDVI670,780 showed no variation. The variation in the chlorophyll content and the CRI and red edge-based NDVI indices indicated seasonal variation as the chlorophyll content starts increasing in early June. The correlation of foliar chlorophyll content and the chlorophyll-related spectral indices for the discrimination of provenances and genotypes are reported for the first time in a naturally occurring tree species consecutively for two years.


Weed Science ◽  
2006 ◽  
Vol 54 (02) ◽  
pp. 346-353 ◽  
Author(s):  
Francisca López-Granados ◽  
Montse Jurado-Expósito ◽  
Jose M. Peña-Barragán ◽  
Luis García-Torres

Field research was conducted to determine the potential of hyperspectral and multispectral imagery for late-season discrimination and mapping of grass weed infestations in wheat. Differences in reflectance between weed-free wheat and wild oat, canarygrass, and ryegrass were statistically significant in most 25-nm-wide wavebands in the 400- and 900-nm spectrum, mainly due to their differential maturation. Visible (blue, B; green, G; red, R) and near infrared (NIR) wavebands and five vegetation indices: Normalized Difference Vegetation Index (NDVI), Ratio Vegetation Index (RVI), R/B, NIR-R and (R − G)/(R + G), showed potential for discriminating grass weeds and wheat. The efficiency of these wavebands and indices were studied by using color and color-infrared aerial images taken over three naturally infested fields. In StaCruz, areas infested with wild oat and canarygrass patches were discriminated using the indices R, NIR, and NDVI with overall accuracies (OA) of 0.85 to 0.90. In Florida–West, areas infested with wild oat, canarygrass, and ryegrass were discriminated with OA from 0.85 to 0.89. In Florida–East, for the discrimination of the areas infested with wild oat patches, visible wavebands and several vegetation indices provided OA of 0.87 to 0.96. Estimated grass weed area ranged from 56 to 71%, 43 to 47%, and 69 to 80% of the field in the three locations, respectively, with per-class accuracies from 0.87 to 0.94. NDVI was the most efficient vegetation index, with a highly accurate performance in all locations. Our results suggest that mapping grass weed patches in wheat is feasible with high-resolution satellite imagery or aerial photography acquired 2 to 3 wk before crop senescence.


2018 ◽  
Vol 10 (8) ◽  
pp. 1293 ◽  
Author(s):  
Yunpeng Luo ◽  
Tarek S. El-Madany ◽  
Gianluca Filippa ◽  
Xuanlong Ma ◽  
Bernhard Ahrens ◽  
...  

Tree–grass ecosystems are widely distributed. However, their phenology has not yet been fully characterized. The technique of repeated digital photographs for plant phenology monitoring (hereafter referred as PhenoCam) provide opportunities for long-term monitoring of plant phenology, and extracting phenological transition dates (PTDs, e.g., start of the growing season). Here, we aim to evaluate the utility of near-infrared-enabled PhenoCam for monitoring the phenology of structure (i.e., greenness) and physiology (i.e., gross primary productivity—GPP) at four tree–grass Mediterranean sites. We computed four vegetation indexes (VIs) from PhenoCams: (1) green chromatic coordinates (GCC), (2) normalized difference vegetation index (CamNDVI), (3) near-infrared reflectance of vegetation index (CamNIRv), and (4) ratio vegetation index (CamRVI). GPP is derived from eddy covariance flux tower measurement. Then, we extracted PTDs and their uncertainty from different VIs and GPP. The consistency between structural (VIs) and physiological (GPP) phenology was then evaluated. CamNIRv is best at representing the PTDs of GPP during the Green-up period, while CamNDVI is best during the Dry-down period. Moreover, CamNIRv outperforms the other VIs in tracking growing season length of GPP. In summary, the results show it is promising to track structural and physiology phenology of seasonally dry Mediterranean ecosystem using near-infrared-enabled PhenoCam. We suggest using multiple VIs to better represent the variation of GPP.


2020 ◽  
Vol 133 (10) ◽  
pp. 2853-2868
Author(s):  
Mahlet T. Anche ◽  
Nicholas S. Kaczmar ◽  
Nicolas Morales ◽  
James W. Clohessy ◽  
Daniel C. Ilut ◽  
...  

Abstract Key message Heritable variation in phenotypes extracted from multi-spectral images (MSIs) and strong genetic correlations with end-of-season traits indicates the value of MSIs for crop improvement and modeling of plant growth curve. Abstract Vegetation indices (VIs) derived from multi-spectral imaging (MSI) platforms can be used to study properties of crop canopy, providing non-destructive phenotypes that could be used to better understand growth curves throughout the growing season. To investigate the amount of variation present in several VIs and their relationship with important end-of-season traits, genetic and residual (co)variances for VIs, grain yield and moisture were estimated using data collected from maize hybrid trials. The VIs considered were Normalized Difference Vegetation Index (NDVI), Green NDVI, Red Edge NDVI, Soil-Adjusted Vegetation Index, Enhanced Vegetation Index and simple Ratio of Near Infrared to Red (Red) reflectance. Genetic correlations of VIs with grain yield and moisture were used to fit multi-trait models for prediction of end-of-season traits and evaluated using within site/year cross-validation. To explore alternatives to fitting multiple phenotypes from MSI, random regression models with linear splines were fit using data collected in 2016 and 2017. Heritability estimates ranging from (0.10 to 0.82) were observed, indicating that there exists considerable amount of genetic variation in these VIs. Furthermore, strong genetic and residual correlations of the VIs, NDVI and NDRE, with grain yield and moisture were found. Considerable increases in prediction accuracy were observed from the multi-trait model when using NDVI and NDRE as a secondary trait. Finally, random regression with a linear spline function shows potential to be used as an alternative to mixed models to fit VIs from multiple time points.


Forests ◽  
2019 ◽  
Vol 10 (7) ◽  
pp. 561 ◽  
Author(s):  
Yulia Ivanova ◽  
Anton Kovalev ◽  
Oleg Yakubailik ◽  
Vlad Soukhovolsky

Vegetation indices derived from remote sensing measurements are commonly used to describe and monitor vegetation. However, the same plant community can have a different NDVI (normalized difference vegetation index) depending on weather conditions, and this complicates classification of plant communities. The present study develops methods of classifying the types of plant communities based on long-term NDVI data (MODIS/Aqua). The number of variables is reduced by introducing two integrated parameters of the NDVI seasonal series, facilitating classification of the meadow, steppe, and forest plant communities in Siberia using linear discriminant analysis. The quality of classification conducted by using the markers characterizing NDVI dynamics during 2003–2017 varies between 94% (forest and steppe) and 68% (meadow and forest). In addition to determining phenological markers, canonical correlations have been calculated between the time series of the proposed markers and the time series of monthly average air temperatures. Based on this, each pixel with a definite plant composition can be characterized by only four values of canonical correlation coefficients over the entire period analyzed. By using canonical correlations between NDVI and weather parameters and employing linear discriminant analysis, one can obtain a highly accurate classification of the study plant communities.


Author(s):  
Eniel Rodríguez-Machado ◽  
Osmany Aday-Díaz ◽  
Luis Hernández-Santana ◽  
Jorge Luís Soca-Muñoz ◽  
Rubén Orozco-Morales

Precision agriculture, making use of the spatial and temporal variability of cultivable land, allows farmers to refine fertilization, control field irrigation, estimate planting productivity, and detect pests and disease in crops. To that end, this paper identifies the spectral reflectance signature of brown rust (Puccinia melanocephala) and orange rust (Puccinia kuehnii), which contaminate sugar cane leaves (Saccharum spp.). By means of spectrometry, the mean values and standard deviations of the spectral reflectance signature are obtained for five levels of contamination of the leaves in each type of rust, observing the greatest differences between healthy and diseased leaves in the red (R) and near infrared (NIR) bands. With the results obtained, a multispectral camera was used to obtain images of the leaves and calculate the Normalized Difference Vegetation Index (NDVI). The results identified the presence of both plagues by differentiating healthy from contaminated leaves through the index value with an average difference of 11.9% for brown rust and 9.9% for orange rust.


Author(s):  
Abdon Francisco Aureliano Netto ◽  
Rodrigo Nogueira Martins ◽  
Guilherme Silverio Aquino De Souza ◽  
Fernando Ferreira Lima Dos Santos ◽  
Jorge Tadeu Fim Rosas

This study aimed to modify a webcam by replacing its near-infrared (NIR) blocking filter to a low-cost red, green and blue (RGB) filter for obtaining NIR images and to evaluate its performance in two agricultural applications. First, the sensitivity of the webcam to differentiate normalized difference vegetation index (NDVI) levels through five nitrogen (N) doses applied to the Batatais grass (Paspalum notatum Flugge) was verified. Second, images from maize crops were processed using different vegetation indices, and thresholding methods with the aim of determining the best method for segmenting crop canopy from the soil. Results showed that the webcam sensor was capable of detecting the effect of N doses through different NDVI values at 7 and 21 days after N application. In the second application, the use of thresholding methods, such as Otsu, Manual, and Bayes when previously processed by vegetation indices showed satisfactory accuracy (up to 73.3%) in separating the crop canopy from the soil.


2020 ◽  
Author(s):  
Andres Almeida-Ñauñay ◽  
Rosa M. Benito ◽  
Miguel Quemada ◽  
Juan Carlos Losada ◽  
Ana Maria Tarquis

<p>Grassland ecosystems are extremely complex and set up intricate structures, whose characteristics and dynamic properties are greatly influenced by climate and meteorological patterns. Climate change and global warming are factors that could impact negatively in the quality and productivity of these ecosystems.</p><p>Remote sensing techniques have been demonstrated as a powerful tool for monitoring extensive areas. In this study, two semi-arid grassland plots were selected in the centre of Spain. This region is characterized by low precipitation and moderate productivity per unit. Through scientific research, spectral vegetation indices (VIs) have been developed to characterize vegetation cover. The most common VI is the Normalized Difference Vegetation Index (NDVI). However, in vegetation scarcity conditions, bare soil reflectance is increased, and the feasibility of NDVI is reduced. This study aims to perform a method to compare soil and agro-climatic variables effect on vegetation time-series indices.</p><p>The construction of the time series was based on multispectral images of MODIS TERRA (MOD09A1.006) product acquired from 2002 till 2018. Three pixels with a temporal resolution of 8 days and a spatial resolution of 500 x 500 m were chosen in each area. To estimate and analyse VIs series, Red (620-670 nm) and Near Infrared (841-876 nm) channels were extracted and filtered by the quality of pixel. All spectral bands showed statistically significant differences confirming that both areas presented different soil properties. Moreover, average annual precipitation was different in each area of study.</p><p>NDVI calculation is only based on NIR and RED bands. To improve the estimation of vegetation in semi-arid areas, several indices have been developed to minimize the soil effect. Each one of them incorporates soil influence in a different way, i.e., Soil Adjusted Vegetation Index (SAVI) adds a constant soil adjustment factor (L), whereas, MSAVI, incorporate an L variable and dependant on soil characteristics.</p><p>Recurrence plots (RP) and recurrence quantification analysis (RQA) were computed to characterize the influence of agro-climatic variables in vegetation index dynamics. Characterization was based on various RQA measures, such as Determinism (DET), average diagonal length (LT) or entropy (ENT).</p><p>Our results showed different RPs depending on the area, VI utilized and precipitation. MSAVI patterns were further distinct, meanwhile, NDVI showed a noisy pattern. LT values in MSAVI were higher than in SAVI implying that MSAVI recurrent events are much longer than SAVI. Simultaneously, LT and DET values in ZSO, with a higher rain, were above ZEA values in MSAVI.</p><p>This indicates that incorporating more detailed information of soil and precipitation reinforce vegetation index estimation and allow to obtain a more distinct pattern of the time series. Therefore, in arid-semiarid grasslands, they should be considered.</p><p><strong>ACKNOWLEDGEMENTS</strong></p><p>The authors acknowledge support from Project No. PGC2018-093854-B-I00 of the Spanish <em>Ministerio de Ciencia Innovación y Universidades</em> of Spain and the funding from the Comunidad de Madrid (Spain) and Structural Funds 2014-2020 512 (ERDF and ESF), through project AGRISOST-CM S2018/BAA-4330, are highly appreciated.</p>


2005 ◽  
Vol 59 (6) ◽  
pp. 836-843 ◽  
Author(s):  
Jennifer Pontius ◽  
Richard Hallett ◽  
Mary Martin

Near-infrared reflectance spectroscopy was evaluated for its effectiveness at predicting pre-visual decline in eastern hemlock trees. An ASD FieldSpec Pro FR field spectroradiometer measuring 2100 contiguous 1-nm-wide channels from 350 nm to 2500 nm was used to collect spectra from fresh hemlock foliage. Full spectrum partial least squares (PLS) regression equations and reduced stepwise linear regression equations were compared. The best decline predictive model was a 6-term linear regression equation ( R2 = 0.71, RMSE = 0.591) based on: Carter Miller Stress Index (R694/R760), Derivative Chlorophyll Index (FD705/FD723), Normalized Difference Vegetation Index ((R800 – R680)/(R800 + R680)), R950, R1922, and FD1388. Accuracy assessment showed that this equation predicted an 11-class decline rating with a 1-class tolerance accuracy of 96% and differentiated healthy trees from those in very early decline with 72% accuracy. These results indicate that narrow-band sensors could be developed to detect very early stages of hemlock decline, before visual symptoms are apparent. This capability would enable land managers to identify early hemlock woolly adelgid infestations and monitor forest health over large areas of the landscape.


Plant Disease ◽  
2012 ◽  
Vol 96 (11) ◽  
pp. 1683-1689 ◽  
Author(s):  
Sindhuja Sankaran ◽  
Reza Ehsani ◽  
Sharon A. Inch ◽  
Randy C. Ploetz

Laurel wilt, caused by the fungus Raffaelea lauricola, affects the growth, development, and productivity of avocado, Persea americana. This study evaluated the potential of visible-near infrared spectroscopy for non-destructive sensing of this disease. The symptoms of laurel wilt are visually similar to those caused by freeze damage (leaf necrosis). In this work, we performed classification studies with visible-near infrared spectra of asymptomatic and symptomatic leaves from infected plants, as well as leaves from freeze-damaged and healthy plants, both of which were non-infected. The principal component scores computed from principal component analysis were used as input features in four classifiers: linear discriminant analysis, quadratic discriminant analysis (QDA), Naïve-Bayes classifier, and bagged decision trees (BDT). Among the classifiers, QDA and BDT resulted in classification accuracies of higher than 94% when classifying asymptomatic leaves from infected plants. All of the classifiers were able to discriminate symptomatic-infected leaves from freeze-damaged leaves. However, the false negatives mainly resulted from asymptomatic-infected leaves being classified as healthy. Analyses of average vegetation indices of freeze-damaged, healthy (non-infected), asymptomatic-infected, and symptomatic-infected leaves indicated that the normalized difference vegetation index and the simple ratio index were statistically different.


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