scholarly journals Mapping Snap Bean Pod and Color Traits, in a Dry Bean × Snap Bean Recombinant Inbred Population

2016 ◽  
Vol 141 (2) ◽  
pp. 131-138 ◽  
Author(s):  
Christina H. Hagerty ◽  
Alfonso Cuesta-Marcos ◽  
Perry Cregan ◽  
Qijian Song ◽  
Phil McClean ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Linkage Map ◽  
Recombinant Inbred ◽  
Type I ◽  
Seed Color ◽  
Breeding Line ◽  
Seed Shape ◽  
Dry Bean ◽  
Snap Bean ◽  
Pod Wall

Snap bean (Phaseolus vulgaris L.) breeding programs are tasked with developing cultivars that meet the standards of the vegetable processing industry and ultimately that of the consumer, all the while matching or exceeding the field performance of existing cultivars. While traditional breeding methods have had a long history of meeting these requirements, genetic marker technology, combined with the knowledge of important quantitative trait loci (QTL), can accelerate breeding efforts. In contrast to dry bean, snap bean immature pods and seeds are consumed as a vegetable. Several pod traits are important in snap bean including: reduced pod wall fiber, absence of pod suture strings, and thickened, succulent pod walls. In addition, snap bean pods are selected for round pod cross section, and pods tend to be longer with cylindrical seed shape. Seed color is an important trait in snap bean, especially those used for processing, as processors prefer white-seeded cultivars. The objective of this study was to investigate the genetic control of traits important to snap bean producers and processors. RR6950, a small seeded brown indeterminate type IIIA dry bean accession, was crossed to the Oregon State University (OSU) breeding line OSU5446, a type I Blue Lake four-sieve breeding line to produce the RR138 F4:6 recombinant inbred (RI) mapping population. We evaluated the RR138 RI population for processing and morphological traits, especially those affecting pods. The RR138 population was genotyped with the BARCBean6K_3 Beadchip, and single nucleotide polymorphisms (SNPs) were used to assemble a linkage map, and identify QTL for pod traits. The linkage map produced from this study contained 1689 SNPs across 1196cM. The map was populated with an average of one SNP per 1.4 cM, spanning 11 linkage groups. Seed and flower color genes B and P were located on Pv02 and Pv07, respectively. A QTL for string:pod length (PL) ratio was found on Pv02 controlling 32% of total genetic variation. QTL for a suite of important processing traits including pod wall fiber, pod height, pod width, and pod wall thickness were found clustering on Pv04 and controlled 21%, 26%, 18%, and 16% of genetic variation for each of these respective traits. A QTL for PL was found on Pv09 controlling 5% of genetic variation.

scholarly journals Morpho-chemical characterization of dry and snap bean (Phaseolus vulgaris L.) landraces collected on Fruska Gora Mt.

Genetika ◽  
2014 ◽  
Vol 46 (1) ◽  
pp. 303-313 ◽  
Author(s):  
Aleksandra Savic ◽  
Gordana Petrovic ◽  
Mirjana Milosevic ◽  
Zorica Nikolic ◽  
Anamarija Stojanovic ◽  
...  
Keyword(s):  
Phaseolus Vulgaris ◽  
Predominantly White ◽  
Seed Mass ◽  
Chemical Characterization ◽  
Wild Plants ◽  
Seed Color ◽  
Phaseolus Vulgaris L ◽  
Seed Shape ◽  
Dry Bean ◽  
Snap Bean

Disappearance of old cultivars, including dry and snap bean (Phaseolus vulgaris L.) has been accelerated in last five to six decades, which mainly led to great genetic impoverishment. For all the humanity and its future, particularly is important the maintenance and evaluation of old cultivar?s seeds. The research presented in this paper has been conducted on the territory of southwestern Fruska gora Mt. Of the collected samples of field and vegetables crops, as well as wild plants on the mountain, 13 accessions of snap bean and 21 accessions of dry bean have been analyzed in this paper. Seed color, seed shape, 1000-seed mass and phaseolin type was determined for all the accessions. Seeds of collected bean and snap bean accessions were predominantly white and cylindrical in shape. Mass of 1000 seeds ranged between 104,90 g and 634,96 g. T phaseolin type dominated, while S type of phaseolin was present in six bean and in two snap bean accessions.

scholarly journals A New Genotype for White Seed Coat Discovered in `Early Wax' Snap Bean

1991 ◽  
Vol 116 (1) ◽  
pp. 131-136 ◽  
Author(s):  
Mark J. Bassett ◽  
Arie Blom
Keyword(s):  
Seed Coat ◽  
Supporting Evidence ◽  
Seed Color ◽  
Breeding Line ◽  
Gene Model ◽  
Snap Bean ◽  
New Genotype ◽  
Recessive Genes ◽  
Progeny Tests ◽  
New Hypothesis

The white-seeded snap bean `Early Wax' (Phaseolus vulgaris L.) was crossed with a black-seeded breeding line 5-593. The F2 segregation data are consistent with a three-gene model, in which all three genes must be homozygous recessive to give white seed coat. One of the genes is t because of segregation in F2 for plants with white flowers and partial seed coat coloration. We hypothesize that the genes ers and ers2 in the presence of f block all seed color expression in all genes for partial coloration of seed. The hypothesis of three recessive genes was confirmed in a backcross test involving `Early Wax' x F1. The interaction of ers and ers2 was tested in progeny tests of partly colored BC-F1 plants. One of the erasure genes, ers2, blocks color expression in color zones close to the hilum, but only in the presence of ers. The other erasure gene, ers, blocks color expression only in color zones beyond those close to the hilum in a manner similar to the restr locus of Prakken (1972). The old hypothesis that partly colored seed phenotypes require the presence of a second factor e in addition to t, where the function of e is vague and unspecified, should be discarded for lack of supporting evidence, Under the new hypothesis, soldier series phenotypes (e.g., bipunctata, arcus, virgata, and virgarcus) may express in t ers Ers2 by action of ers or in t Ers Ers2 by action of various genes for partly colored seeds other than ers.

Type I and type II error rates for quantitative trait loci (QTL) mapping studies using recombinant inbred mouse strains

1996 ◽  
Vol 26 (2) ◽  
pp. 149-160 ◽  
Author(s):  
J. K. Belknap ◽  
S. R. Mitchell ◽  
L. A. O'Toole ◽  
M. L. Helms ◽  
J. C. Crabbe
Keyword(s):  
Quantitative Trait ◽  
Recombinant Inbred ◽  
Inbred Mouse ◽  
Error Rates ◽  
Mouse Strains ◽  
Type I ◽  
Inbred Mouse Strains ◽  
Type Ii ◽  
Type Ii Error ◽  
Recombinant Inbred Mouse

scholarly journals New Alleles, rkcd and rkp, at the Red Kidney Locus for Seedcoat Color in Common Bean

2003 ◽  
Vol 128 (4) ◽  
pp. 552-558 ◽  
Author(s):  
Mark J. Bassett ◽  
Phillip N. Miklas
Keyword(s):  
Phaseolus Vulgaris ◽  
Common Bean ◽  
Gene Symbol ◽  
Recurrent Parent ◽  
Breeding Line ◽  
Genetic Investigation ◽  
Dry Bean ◽  
Pink Color ◽  
Growing Conditions ◽  
New Alleles

Among light red and dark red kidney common bean (Phaseolus vulgaris L.) varieties, pink seedcoat color (light red kidney) is dominant to dark red, but when Red Mexican varieties (with dark red seedcoats) are crossed with dark red kidney varieties, dark red seedcoat is dominant to the pink segregants observed in an F2 population. A genetic investigation of this reversal of dominance was performed by making crosses in all combinations among standard varieties of the four recessive-red market classes—Light Red Kidney `California Early Light Red Kidney', Pink `Sutter Pink', Red Mexican `NW 63', and Dark Red Kidney `Montcalm'—and observing segregation for seedcoat colors in F2 and F3 progenies. The data were consistent with the hypothesis that `NW 63' carries a new allele at Rk, viz., rkcd, where cd stands for convertible dark red kidney. Thus, C rkcd expresses dark red kidney seedcoats and cu rkcd expresses pink seedcoats. Also, C B rkcd expresses garnet brown seedcoats, whereas C B rkd expresses liver brown seedcoat color. Thus, we propose the gene symbol rkcd for the Rk locus gene in `NW 63'. The rk gene from Light Red Kidney `Redkloud' and `Sutter Pink' was backcrossed (with cu b v) into the recurrent parent 5-593, a Florida dry bean breeding line with seedcoat genotype P [C r] J G B V Rk. In the F2 progenies of BC2 to 5-593, the cu b v rk segregants from `Redkloud' gave true pink seedcoats, whereas those derived from `Sutter Pink' gave consistently very weak pink color under humid Florida growing conditions. We propose the gene symbol rkp, where p stands for pale pink, for the distinctive rk allele in `Sutter Pink'. The more general implications of the above findings were discussed.

scholarly journals Molecular-marker-based Genetic Analysis of Tepary Bean-derived Common Bacterial Blight Resistance in Different Developmental Stages of Common Bean

1997 ◽  
Vol 122 (3) ◽  
pp. 329-337 ◽  
Author(s):  
Geunhwa Jung ◽  
Paul W. Skroch ◽  
Dermot P. Coyne ◽  
James Nienhuis ◽  
E. Arnaud-Santana ◽  
...  
Keyword(s):  
Linkage Group ◽  
Common Bean ◽  
Linkage Map ◽  
Recombinant Inbred ◽  
Bacterial Blight ◽  
Chromosomal Region ◽  
Bacterial Disease ◽  
Common Bacterial Blight ◽  
Group 5 ◽  
Group 1

Randomly amplified polymorphic DNA (RAPD) molecular markers were used to construct a partial genetic linkage map in a recombinant inbred population derived from the common bean (Phaseolus vulgaris L.) cross PC-50 × XAN-159 for studying the genetics of bacterial disease resistance in common bean. The linkage map spanned 426 cM and included 168 RAPD markers and 2 classical markers with 11 unassigned markers. The seventy recombinant inbred lines were evaluated for resistance to two strains of common bacterial blight [Xanthomonas campestris pv. phaseoli (Smith) Dye] (Xcp). Common bacterial blight (CBB) resistance was evaluated for Xcp strain EK-11 in later-developed trifoliolate leaves and for Xcp strains, DR-7 and EK-11, in first trifoliolate leaves, seeds, and pods. One to four quantitative trait loci (QTLs) accounted for 18% to 53% of the phenotypic variation for traits. Most significant effects for CBB resistance were associated with one chromosomal region on linkage group 5 and with two regions on linkage group 1, of the partial linkage map. The chromosomal region (a 13-cM interval) in linkage group 5 was significantly associated with resistance to Xcp strains DR-7 and EK-11 in leaves, pods, and seeds. The regions in linkage group 1 were also significantly associated with resistance to both Xcp strains in more than one plant organ. In addition, a seedcoat pattern gene (C) and a flower color gene (vlae) were mapped in linkage groups 1 and 5, respectively, of the partial linkage map. The V locus was found to be linked to a QTL with a major effect on CBB resistance.

Genetic variation and environmental effects on agronomical and commercial quality traits in the main European market classes of dry bean

2006 ◽  
Vol 95 (2-3) ◽  
pp. 336-347 ◽  
Author(s):  
A.M. González ◽  
A.B. Monteagudo ◽  
P.A. Casquero ◽  
A.M. De Ron ◽  
M. Santalla
Keyword(s):  
Genetic Variation ◽  
Environmental Effects ◽  
European Market ◽  
Quality Traits ◽  
Dry Bean

Two genetic linkage maps of mungbean using RFLP and RAPD markers

2000 ◽  
Vol 51 (4) ◽  
pp. 415 ◽  
Author(s):  
C. J. Lambrides ◽  
R. J. Lawn ◽  
I. D. Godwin ◽  
J. Manners ◽  
B. C. Imrie
Keyword(s):  
Linkage Map ◽  
Segregation Distortion ◽  
Recombinant Inbred ◽  
Genetic Linkage ◽  
Rapd Markers ◽  
Rflp Markers ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Genetic Linkage Maps ◽  
Map Distance

Two genetic linkage maps of mungbean derived from the cross Berken ACC 41 are reported. The F2 map constructed from 67 individuals consisted of 110 markers (52 RFLP and 56 RAPD) that grouped into 12 linkage groups. The linked markers spanned a total map distance of 758.3 cM. A recombinant inbred (RI) population derived from the 67 F2 individuals was used for the generation of an additional linkage map. The RI map, composed entirely of RAPD markers, consisted of 115 markers in 12 linkage groups. The linked markers spanned a total map distance of 691.7 cM. Using a framework set of RFLP markers, the F2 map was compared with another F2 mungbean map constructed in Minnesota. In general, the order of these markers was consistent between maps. Segregation distortion was observed for some markers. 14.5% (16/110) of mapped F2 markers and 24% (28/115) of mapped RI markers segregated with distorted ratios. Segregation distortion occurred in each successive generation after the F2 . The regions of distortion identified in the Australian maps did not coincide with regions of the Minnesota map.

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