scholarly journals CALLIPHORIDAE (REVIEW)

2021 ◽  
pp. 80-84
Author(s):  
Barashkova ◽  
Budishcheva
Keyword(s):  
Ribosomal Rna ◽  
Phylogenetic Trees ◽  
Evolutionary History ◽  
Sequence Data ◽  
28S Rrna ◽  
Cytochrome Oxidase Subunit ◽  
Nucleotide Sequence Data ◽  
The Family ◽  
Gene Coi ◽  
Host Tissues

The Calliphoridae family attracts many researchers in the phylogeny of myiasis in this family. Nevertheless, even after more than 50 years of research of the phylogenetic relationships among Calliphoridae subfamilies, the origin of myiasis remains unclear. By studying the peculiarities of the ecology of blue-green meat flies, and their adaptation to various habitats, it was found that the transition to facultative parasitism at the larval stage could occur in several ways, and was accompanied by the formation of viviparity. The larval parasitism of Calliphoridae on birds developed as a tendency of evolution. Larvae of the genus Protocalliphora, began feeding on blood of birds, and larvae of the species of the genus Trypocalliphora feed on the host tissues causing myiasis and the death of chicks. In order to elucidate the problem, we constructed three phylogenetic trees using nucleotide sequence data from cytochrome oxidase subunit one gene (COI), representing a mitochondrial conservative gene, and nuclear 28S subunit of ribosomal RNA gene (28S rRNA) in order to interpret the evolutionary profile of myiasis in the family Calliphoridae. Comparative analysis of the phylogenetic trees shows that the habit of obligatory myiasis originated independently more than five times among different calliphorid taxa in the course of evolutionary history. The inclusion of other myiasis-causing families (Oestridae, Gastrophilidae, and Sarcophagidae) along with fundamental life-history studies that deal with biology, physiology, feeding behavior and host specificity in addition to phylogenetic analysis could provide a more accurate answer to the origin of myiasis

The molecular systematics of blowflies and screwworm flies (Diptera: Calliphoridae) using 28S rRNA, COX1 and EF-1α: insights into the evolution of dipteran parasitism

Parasitology ◽  
2011 ◽  
Vol 138 (13) ◽  
pp. 1760-1777 ◽  
Author(s):  
LAURA M. McDONAGH ◽  
JAMIE R. STEVENS
Keyword(s):  
Sequence Data ◽  
Single Gene ◽  
Nuclear Gene ◽  
Evolutionary Status ◽  
28S Rrna ◽  
Gene Trees ◽  
Data Set ◽  
Protein Coding ◽  
Nucleotide Sequence Data ◽  
The Family

SUMMARYThe Calliphoridae include some of the most economically significant myiasis-causing flies in the world – blowflies and screwworm flies – with many being notorious for their parasitism of livestock. However, despite more than 50 years of research, key taxonomic relationships within the family remain unresolved. This study utilizes nucleotide sequence data from the protein-coding genes COX1 (mitochondrial) and EF1α (nuclear), and the 28S rRNA (nuclear) gene, from 57 blowfly taxa to improve resolution of key evolutionary relationships within the family Calliphoridae. Bayesian phylogenetic inference was carried out for each single-gene data set, demonstrating significant topological difference between the three gene trees. Nevertheless, all gene trees supported a Calliphorinae-Luciliinae subfamily sister-lineage, with respect to Chrysomyinae. In addition, this study also elucidates the taxonomic and evolutionary status of several less well-studied groups, including the genus Bengalia (either within Calliphoridae or as a separate sister-family), genus Onesia (as a sister-genera to, or sub-genera within, Calliphora), genus Dyscritomyia and Lucilia bufonivora, a specialised parasite of frogs and toads. The occurrence of cross-species hybridisation within Calliphoridae is also further explored, focusing on the two economically significant species Lucilia cuprina and Lucilia sericata. In summary, this study represents the most comprehensive molecular phylogenetic analysis of family Calliphoridae undertaken to date.

Evidence from the small and large ribosomal RNA structure suggests that Anoplostoma rectospiculum Gal'tsova, 1976 (Nematoda: Anoplostomatidae) is a member of the superfamily Enoploidea, not Oncholaimoidea

Nematology ◽  
2004 ◽  
Vol 6 (3) ◽  
pp. 413-421 ◽  
Author(s):  
Anna N. Pegova ◽  
Elena D. Krasnova ◽  
Vladimir V. Aleshin
Keyword(s):  
Ribosomal Rna ◽  
Rna Structure ◽  
Phylogenetic Trees ◽  
18S Rrna Gene ◽  
Rrna Gene ◽  
28S Rrna ◽  
Ssu Rrna ◽  
Segment Sequence ◽  
The Family ◽  
Lsu Rrna Gene

Abstract Analyses of the primary structure of the 18S rRNA gene and D3 segment of the 28S rRNA, as well as evidence from the secondary structure of the SSU rRNA V7 region, suggest that Anoplostoma rectospiculum (Anoplostomatidae) has closer relationships to the family Enoplidae than to the Oncholaimidae. In phylogenetic trees derived from full length SSU rRNA gene and partial LSU rRNA gene (D3 expansion segment) sequence analyses, A. rectospiculum exhibits long branches. The associated artefacts of long branch attraction (LBA) are circumvented because of the presence of an undoubted molecular synapomorphy – a low homoplastic 1. b. p. insertion in helix 43 of the SSU rRNA which is shared jointly by Anoplostomatidae and Enoplidae. Analysis of low homoplastic apomorphic characters is considered to be a tool for testing phylogenies against LBA artefacts.

Molecular phylogenetics of the four Schistosoma species groups determined with partial 28S ribosomal RNA gene sequences

Parasitology ◽  
1995 ◽  
Vol 111 (2) ◽  
pp. 167-175 ◽  
Author(s):  
D. T. J. Littlewood ◽  
D. A. Johnston
Keyword(s):  
Ribosomal Rna ◽  
Molecular Phylogenetics ◽  
Sequence Data ◽  
18S Rrna Gene ◽  
Rrna Gene ◽  
28S Rrna ◽  
Gene Sequences ◽  
Nucleotide Sequence Data ◽  
The Status ◽  
Species Groups

SUMMARYPartial 28S ribosomal RNA (rRNA) gene sequences, including the variable domains D1, D2 and D3, were determined for representative species from the 4 Schistosoma species groups. On an alignment of 1345 bp from S. mansoni, S. haematobium, S. spindale and S. japonicum (with Heterobilharzia americana chosen as an outgroup), both maximum likelihood and maximum parsimony analyses provide a robust molecular phytogeny for the genus; ((((S. haematobium, S. spindale), S. mansoni), S. japonicum), H. americana). When analysed separately, both domain D1 and domain D2 yielded similarly informative data whereas D3 failed to resolve the phylogeny. These results confirm a phylogeny previously suggested by 18S rRNA gene sequences, corroborating the status of S. spindale as a sister taxon to S. haematobium, and demonstrate the utility of 28S rRNA gene sequence data for resolving phylogenies within the Schistosomatidae.Note: nucleotide sequence data reported in this paper are available in the EMBL database under the accession numbers Z46503/04/05/06/21.

Description of the immature stages of the Neotropical whirligig beetle Gyrinus (Neogyrinus) rozei Ochs, 1953 (Coleoptera: Gyrinidae) and first report of the parasitoid wasp Melanosmicra sp. (Hymenoptera: Chalcididae) on a Gyrinus species

Zootaxa ◽  
2020 ◽  
Vol 4732 (1) ◽  
pp. 99-116
Author(s):  
DANIARA COLPANI ◽  
CÉSAR JOÃO BENETTI ◽  
NEUSA HAMADA ◽  
VANDERLY ANDRADE-SOUZA ◽  
KARINE SCHOENINGER ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Sequence Data ◽  
Parasitoid Wasp ◽  
First Record ◽  
The Body ◽  
Immature Stages ◽  
Cytochrome Oxidase Subunit ◽  
Dna Sequence Data ◽  
Gene Coi ◽  
Northern Brazil

In most species of Gyrinidae, the immature stages are unknown, especially due to the difficulty in collecting the juveniles and assigning them to a particular species. Molecular association is a feasible technique that may solve this problem. Recent studies have used DNA sequence data, specifically the gene cytochrome oxidase subunit I (COI), to associate immature and adult stages, thus enabling the description of the former. The objectives of this study were (1) to describe and illustrate the immature stages of Gyrinus (Neogyrinus) rozei Ochs, 1953 including morphometric, chaetotaxic and bionomic information, and (2) to assess the usefulness of the gene COI to associate immatures and adults of Gyrinus. The studied specimens were collected in Roraima state, northern Brazil. The association of immature and adult stages was done either by rearing adults under laboratory conditions or by using DNA sequence data (COI). Eggs were described based on scanning electron microscopy; they are distinguished mainly by several features of chorion, micropyle and reticulation. Larvae of G. (N.) rozei can be distinguished from those of other Neotropical Gyrinidae by a combination of several characters, including the stipes with five robust hook-like additional setae on the dorsointernal margin, and the lacinia roughly hook-shaped. The pupa is similar to that of G. argentinus Steinhel, 1869, except for the number of setae on the body. The first record of the parasitoid wasp Melanosmicra sp. (Hymenoptera: Chalcididae) on a Gyrinus species is also provided. 

Generic delimitation and phylogenetic uncertainty: an example from a group that has undergone an explosive radiation

2005 ◽  
Vol 18 (1) ◽  
pp. 41 ◽  
Author(s):  
L. A. Orthia ◽  
L. G. Cook ◽  
M. D. Crisp
Keyword(s):  
Phylogenetic Trees ◽  
Evolutionary History ◽  
Sequence Data ◽  
Evolutionary Relationships ◽  
Recent Proposal ◽  
Generic Delimitation ◽  
Dna Sequence Data ◽  
Single Genus ◽  
Phylogeny Estimation

Phylogenetic trees can provide a stable basis for a higher-level classification of organisms that reflects evolutionary relationships. However, some lineages have a complex evolutionary history that involves explosive radiation or hybridisation. Such histories have become increasingly apparent with the use of DNA sequence data for phylogeny estimation and explain, in part, past difficulties in producing stable morphology-based classifications for some groups. We illustrate this situation by using the example of tribe Mirbelieae (Fabaceae), whose generic classification has been fraught for decades. In particular, we discuss a recent proposal to combine 19 of the 25 Mirbelieae genera into a single genus, Pultenaea sens. lat., and how we might find stable and consistent ways to squeeze something as complex as life into little boxes for our own convenience.

scholarly journals Molecular Phylogeny of the Salmonellae: Relationships among Salmonella Species and Subspecies Determined from Four Housekeeping Genes and Evidence of Lateral Gene Transfer Events

2008 ◽  
Vol 190 (21) ◽  
pp. 7060-7067 ◽  
Author(s):  
J. R. McQuiston ◽  
S. Herrera-Leon ◽  
B. C. Wertheim ◽  
J. Doyle ◽  
P. I. Fields ◽  
...  
Keyword(s):  
Gene Transfer ◽  
Lateral Gene Transfer ◽  
Salmonella Enterica ◽  
Sequence Data ◽  
Housekeeping Genes ◽  
Housekeeping Gene ◽  
Diverse Group ◽  
Nucleotide Sequence Data ◽  
The Family ◽  
Common Serotypes

ABSTRACT The salmonellae are a diverse group of bacteria within the family Enterobacteriaceae that includes two species, Salmonella enterica and Salmonella bongori. In order to characterize the phylogenetic relationships of the species and subspecies of Salmonella, we analyzed four housekeeping genes, gapA, phoP, mdh and recA, comprising 3,459 bp of nucleotide sequence data for each isolate sequenced. Sixty-one isolates representing the most common serotypes of the seven subspecies of Salmonella enterica and six isolates of Salmonella bongori were included in this study. We present a robust phylogeny of the Salmonella species and subspecies that clearly defines the lineages comprising diphasic and monophasic subspecies. Evidence of intersubspecies lateral gene transfer of the housekeeping gene recA, which has not previously been reported, was obtained.

Molecular phylogenetics of snailfishes (Cottoidei: Liparidae) based on MtDNA and RADseq genomic analyses, with comments on selected morphological characters

Zootaxa ◽  
2019 ◽  
Vol 4642 (1) ◽  
pp. 1-79 ◽  
Author(s):  
JAMES WILDER ORR ◽  
INGRID SPIES ◽  
DUANE E. STEVENSON ◽  
GARY C. LONGO ◽  
YOSHIAKI KAI ◽  
...  
Keyword(s):  
Molecular Phylogenetics ◽  
Sequence Data ◽  
Morphological Characters ◽  
Molecular Sequence Data ◽  
Molecular Sequence ◽  
Genome Wide ◽  
The Pacific ◽  
The Family ◽  
Genomic Analyses ◽  
Gene Coi

Phylogenetic relationships of snailfishes of the family Liparidae were analyzed on the basis of two sets of molecular sequence data: one from the mitochondrial DNA cytochrome c oxidase subunit one gene (COI) and another from restriction-site associated genome-wide sequences (RADseq). The analysis of COI sequence data from at least 122 species of 18 genera from the Pacific, Atlantic, and Southern oceans resulted in a moderately well-resolved phylogeny among the major clades, albeit with significant polytomy among central clades. Nectoliparis was the sister of all other members of the family, followed by Liparis. Liparis, Careproctus, and Paraliparis were paraphyletic. Liparis was recovered in two closely related clades, with L. fucensis sister of all other liparids except Nectoliparis, and both Careproctus and Paraliparis were each recovered among at least three widely separated clades. The RADseq analysis of 26 species of 11 genera from the eastern North Pacific strongly confirmed the overall results of the COI analysis, with the exception of the paraphyly of Liparis due to the absence of L. fucensis. Our results show that the pelvic disc has been independently lost multiple times and the pectoral-fin girdle has been independently reduced in multiple lineages. 

scholarly journals Molecular Detection and Characterization of Goat Isolate ofTaenia hydatigenain Turkey

2012 ◽  
Vol 2012 ◽  
pp. 1-4 ◽  
Author(s):  
Armagan Erdem Utuk ◽  
Fatma Cigdem Piskin
Keyword(s):  
Ribosomal Rna ◽  
Molecular Detection ◽  
Sequence Data ◽  
Pcr Amplification ◽  
Small Subunit ◽  
Molecular Tools ◽  
Taenia Hydatigena ◽  
Nucleotide Sequence Data ◽  
First Time

The aim of this study was to provide molecular detection and characterization of the goat isolate ofTaenia hydatigenafrom Ankara province of Turkey. For this purpose, PCR amplification of small subunit ribosomal RNA (rrnS) and partial sequencing of mitochondrial cytochrome c oxidase subunit 1 (mt-CO1) genes were performed in a one-month-old dead goat. According to rrnS-PCR results, parasites were identified asTaeniaspp., and partial sequence of mt-CO1 gene was corresponding toT. hydatigena. At the end of the study, we concluded that molecular tools can be used to define species of parasites in cases where the key morphologic features cannot be detected. Nucleotide sequence data of Turkish goat isolate ofT. hydatigenawas submitted to GenBank for other researchers interested in this subject. By this study, molecular detection and characterization ofT. hydatigenawas done for the first time in Turkey.

Systematics and ecology of Anachipteria geminus sp. nov. (Acari: Oribatida: Achipteriidae) from arboreal lichens in western North America

2008 ◽  
Vol 140 (5) ◽  
pp. 539-556 ◽  
Author(s):  
Zoë Lindo ◽  
Marilyn Clayton ◽  
Valerie M. Behan-Pelletier
Keyword(s):  
North America ◽  
Pacific Northwest ◽  
Sequence Data ◽  
Oribatid Mite ◽  
Dry Mass ◽  
Tsuga Heterophylla ◽  
Silver Fir ◽  
28S Rrna ◽  
Molecular Sequence Data ◽  
The Family

AbstractWe present the systematics and ecology of a new species of arboreal oribatid mite in the family Achipteriidae, Anachipteria geminussp. nov., a dominant arthropod in canopy lichens associated with western hemlock (Tsuga heterophylla (Raf.) Sarg. (Pinaceae)) and Pacific silver fir (Abies amabilis (Dougl. ex Loud.) Dougl. ex Forbes (Pinaceae)) in the coniferous temperate and montane forests of the Pacific Northwest of North America. The species is described on the basis of the morphology of all active instars plus molecular sequence data for the D3 region of the 28s rRNA (D3-28s) and mitochondrial cytochrome oxidase 1 (CO1) genes. Anachipteria geminus is the dominant oribatid mite in foliose lichens in the upper canopies of Pacific montane conifer trees. Specimens were found in 100% of canopy lichens sampled, and abundances can reach 1450 individuals / 100 g dry mass of lichen. Analysis of the population structure indicates that A. geminus has seasonally stable populations consistent with overlapping generations. Anachipteria geminus expresses morphological character states that require expanding the diagnoses of the genus Anachipteria and the family Achipteriidae. A revised diagnosis and morphological key to species of Anachipteria in Canada are given.

scholarly journals Confusion surrounding Didymosphaeria—phylogenetic and morphological evidence suggest Didymosphaeriaceae is not a distinct family

Phytotaxa ◽  
2014 ◽  
Vol 176 (1) ◽  
pp. 102 ◽  
Author(s):  
HIRAN A. ARIYAWANSA ◽  
ERIO CAMPORESI ◽  
KASUN M. THAMBUGALA ◽  
AUSANA MAPOOK ◽  
JI-CHUAN KANG ◽  
...  
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Morphological Evidence ◽  
Nucleotide Sequence Data ◽  
The Family ◽  
Family Based ◽  
Phylogenetic Lineages ◽  
A New Species

Didymosphaeriaceae is a ubiquitous fungal family that is reported to include saprobic, endophytic and pathogenic species associated with a wide variety of substrates. The family is characterized by 1-septate ascospores and trabeculate pseudoparaphyses, mainly anastomosing above the asci. In recent treatments Appendispora, Didymosphaeria, Roussoella, Phaeodothis and Verruculina were placed in the family. The aim of the present study is to delineate phylogenetic lineages within Didymosphaeriaceae and allied genera. A new species, Didymosphaeria rubi-ulmifolii, was isolated and identified based on morphological characters and phylogenetic analyses of partial 18S nrDNA and 28S nrDNA nucleotide sequence data. Didymosphaeria rubi-ulmifolii clustered with Montagnulaceae as a separate genus, while two putative strains (HKUCC 5834 and CMW 22186) of D. futilis from GenBank clustered with Cucurbitariaceae and Didymellaceae, respectively. The new species is characterized by immersed to slightly erumpent ascomata immersed under a clypeus, a peridium with compressed cells of textura intricata, long trabeculate pseudoparaphyses, anastomosing mostly above the asci and brown, 1-septate ascospores with granulate ornamentation. Phylogenetic analysis in combination with morphology and a review of literature show that Appendispora, Phaeodothis, Roussoella and Verruculina should be excluded from the family. Phaeodothis belongs in Montagnulaceae, Verruculina in Testudinaceae, while Appendispora and Roussoella belong in Roussoellaceae. The position of Didymosphaeriaceae as a distinct family, based on 1-septate ascospores and trabeculate pseudoparaphyses, mainly anastomosing above the asci is doubtful. Fresh collections of more Didymosphaeria strains are needed for epitypification and to obtain sequence data to establish if this family can be maintained.

Sign in / Sign up

Export Citation Format

Share Document