Descriptive osteology of Gymnocorymbus ternetzi (Teleostei: Characiformes: Characidae)

2008 ◽  
Vol 17 (2) ◽  
pp. 111-128
Author(s):  
N.G. Bogutskaya ◽  
A.M. Naseka ◽  
I.V. Golovanova
Keyword(s):  
Phylogenetic Analysis ◽  
Material Composition ◽  
Cranial Bone ◽  
Shape Structure ◽  
The Common ◽  
Systematic Group ◽  
Cranial Osteology

The purpose of this paper is giving an extensive overview of the cranial skeleton of Gymnocorymbus ternetzi (Boulenger, 1895) in a form of a formalized scheme that reflect its Bauplan (German for building plan, blueprint; plural: baupläne or bauplaene), a term in biology referring to the common new and original [homologous] properties of the members of a systematic group [taxon]). Each element of the Bauplan can be described by a set of parameters, i.e., size, shape, structure, material composition and position. Though Bauplan is undoubtedly an abstraction, it is a necessary abstraction to be used in phylogenetic analysis with preference to "ingroup" and "outgroup" comparisons.The cranial osteology of black tetra Gymnocorymbus ternetzi (Boulenger, 1895) is described based on the study of larvae, juvenile and adult specimens. Provided are Latin terms and some English equivalents as well remarks on origin, homology and terminology for each cranial bone discussed.

scholarly journals Subtype Characterization and Zoonotic Potential of Cryptosporidium felis in Cats in Guangdong and Shanghai, China

Pathogens ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 89
Author(s):  
Jiayu Li ◽  
Fuxian Yang ◽  
Ruobing Liang ◽  
Sheng Guo ◽  
Yaqiong Guo ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Phylogenetic Analysis ◽  
Genetic Characterization ◽  
Zoonotic Potential ◽  
Common Occurrence ◽  
High Genetic Diversity ◽  
Gp60 Gene ◽  
The Common ◽  
Subtyping Tool

Cryptosporidiumfelis is an important cause of feline and human cryptosporidiosis. However, the transmission of this pathogen between humans and cats remains controversial, partially due to a lack of genetic characterization of isolates from cats. The present study was conducted to examine the genetic diversity of C. felis in cats in China and to assess their potential zoonotic transmission. A newly developed subtyping tool based on a sequence analysis of the 60-kDa glycoprotein (gp60) gene was employed to identify the subtypes of 30 cat-derived C. felis isolates from Guangdong and Shanghai. Altogether, 20 C. felis isolates were successfully subtyped. The results of the sequence alignment showed a high genetic diversity, with 13 novel subtypes and 2 known subtypes of the XIXa subtype family being identified. The known subtypes were previously detected in humans, while some of the subtypes formed well-supported subclusters with human-derived subtypes from other countries in a phylogenetic analysis of the gp60 sequences. The results of this study confirmed the high genetic diversity of the XIXa subtype family of C. felis. The common occurrence of this subtype family in both humans and cats suggests that there could be cross-species transmission of C. felis.

scholarly journals Mitochondrial recovery from shotgun metagenome sequencing enabling phylogenetic analysis of the common thresher shark (Alopias vulpinus)

Meta Gene ◽  
2018 ◽  
Vol 15 ◽  
pp. 10-15 ◽  
Author(s):  
Michael P. Doane ◽  
Dovi Kacev ◽  
Sean Harrington ◽  
Kyle Levi ◽  
Dnyanada Pande ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Thresher Shark ◽  
The Common ◽  
Metagenome Sequencing ◽  
Alopias Vulpinus

scholarly journals First nearly complete skull of Gallotia auaritae (lower-middle Pleistocene, Squamata, Gallotiinae) and a morphological phylogenetic analysis of the genus Gallotia

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Penélope Cruzado-Caballero ◽  
Carolina Castillo Ruiz ◽  
Arnau Bolet ◽  
Juan Ramón Colmenero ◽  
Julio De la Nuez ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Cranial Morphology ◽  
Middle Pleistocene ◽  
Phylogenetic Position ◽  
Fossil Species ◽  
La Palma ◽  
Computed Microtomography ◽  
X Ray Computed ◽  
Cranial Osteology ◽  
First Time

Abstract The Canary Islands are an Atlantic archipelago known for its high number of endemic species. Among the most known endemic vertebrate species are the giant lizards of the genus Gallotia. We describe the cranial osteology of the first almost complete and articulated fossil skull of the taxon Gallotia auaritae, recovered from the lower-middle Pleistocene of the La Palma island. In this work, X-ray computed microtomography images were used to perform an exhaustive phylogenetic analysis where most of the extant and fossil species of the genus Gallotia were included for first time. This analysis recovered a monophyletic Gallotia clade with similar topology to that of molecular analyses. The newly described specimen shares some characters with the group formed by G. bravoana, G. intermedia and G. simonyi, G. auaritae, and its position is compatible with a referral to the latter. Our study adds new important data to the poorly known cranial morphology of G. auaritae, and the phylogenetic analysis reveals an unexpected power of resolution to obtain a morphology-based phylogeny for the genus Gallotia, for inferring the phylogenetic position of extinct species and for helping in the identification of fossil specimens.

scholarly journals Morphology-based phylogenetic analysis of the treehopper tribe Smiliini (Hemiptera: Membracidae: Smiliinae), with reinstatement of the tribe Telamonini

Zootaxa ◽  
2011 ◽  
Vol 3047 (1) ◽  
pp. 1 ◽  
Author(s):  
MATTHEW S. WALLACE
Keyword(s):  
Phylogenetic Analysis ◽  
Common Ancestor ◽  
Hind Wing ◽  
Morphological Characters ◽  
Dorsal Margin ◽  
Incertae Sedis ◽  
Plant Associations ◽  
Original Dataset ◽  
The Common ◽  
Morphological Differences

Members of the Smiliini, the nominotypical tribe of the large New World subfamily Smiliinae, are predominately Nearctic in distribution. This tribe included 169 mostly tree-feeding species in 23 genera. A parsimony-based phylogenetic analysis of an original dataset comprising 89 traditional and newly discovered morphological characters for 69 species, including representatives of 22 of the 23 described genera of Smiliini and five other previously recognized tribes of the subfamily, resulted in a single most parsimonious tree with three major clades. The broad recent concept of Smiliini (including Telamonini as a junior synonym) was not recovered as monophyletic by the analysis. Instead, the analysis supported narrower definitions of both Telamonini, here reinstated from synonymy, and Smiliini. A key and diagnoses are given to define these tribes, along with discussions of their phylogeny, biogeography, and host plant associations. The genera Antianthe Fowler, Hemicardiacus Plummer, Smilirhexia McKamey, and Tropidarnis Fowler are placed as Smiliinae, incertae sedis. Based on the phylogeny, several genera from both tribes including Atymna Stål, Cyrtolobus Goding, Heliria Stål, and Telamona Fitch are not monophyletic. Diagnostic characters emphasizing the morphological differences between the Smiliini and Telamonini include the dorsal margin of the head, the shape of the pronotum, the size of the pronotal humeral angles, the presence or absence of pronotal longitudinal rugae, the size of forewing cells, variations in the fusion of veins R and M apically in both the foreand hind wing, and the shape of the apex of the female second valvulae. Mapping geographic distribution onto the phylogeny suggests that the common ancestor of the ingroup (all three clades) occurred in Central America and Mexico, with multiple dispersals to temperate North America. Many Smiliini and Telamonini feed on various species of oak (Quercus) and the close evolutionary association between these insects and their hosts is discussed.

First report of Limacella from Bangladesh, with a new species description

Phytotaxa ◽  
2017 ◽  
Vol 332 (3) ◽  
pp. 280 ◽  
Author(s):  
MD. IQBAL HOSEN ◽  
TAI-HUI LI
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Large Subunit ◽  
Species Description ◽  
Molecular Evidence ◽  
Molecular Phylogenetic ◽  
The Common ◽  
New Species Description ◽  
Generic Record ◽  
A New Species

Limacella bangladeshana, a new species of well-known fungal family Amanitaceae from Bangladesh is described and illustrated based on morphology and molecular evidence. The species is mainly recognized by its medium-sized basidiomata, cream-white to off-white or buff-white pileus, the slightly uplifted pileal margin, globose basidiospores measuring 3.5–4 × 3.5–4 µm, an ixo-trichodermal pileipellis, and the common presence of clamp connections. Molecular phylogenetic analysis using sequence of the nuclear ribosomal large subunit (nrLSU) also supports the recognition of the new species in Limacella. This species represents the first generic record of Limacella for Bangladesh. Detailed description, color photos and illustration, and comparison with allied taxa are presented. 

scholarly journals Placenta-Specific Protein 1 Is Conserved throughout the Placentalia under Purifying Selection

2014 ◽  
Vol 2014 ◽  
pp. 1-5 ◽  
Author(s):  
Eric J. Devor
Keyword(s):  
Phylogenetic Analysis ◽  
Common Ancestor ◽  
Phylogenetic Analyses ◽  
Mammalian Species ◽  
Purifying Selection ◽  
Specific Protein ◽  
Mammal Species ◽  
Crucial Component ◽  
Successful Group ◽  
The Common

Placental mammals (Placentalia) are a very successful group that, today, comprise 94% of all mammalian species. Recent phylogenetic analyses, coupled with new, quite complete fossils, suggest that the crown orders were all established rapidly from a common ancestor just after the Cretaceous/Tertiary (K/T) boundary 65 million years ago. Extensive molecular and morphologic evidence has led to a description of the common ancestor of all Placentalia in which a two-horned uterus and a hemochorial placenta are present. Thus, the process of placentation in which the placenta invades and anchors to the uterine epithelium was already established. One factor that has been suggested as a crucial component of this process is placenta-specific protein 1 (PLAC1). A phylogenetic analysis of the PLAC1 protein in 25 placental mammal species, representing nine of the sixteen crown orders of the Placentalia, suggests that this protein was present in the placental common ancestor in the form we see it today, that it evolved in the Placentalia and has been subject to the effects of purifying selection since its appearance.

scholarly journals Contribution to the biosystematic study of carpophoric basidiomycetes (higher fungi) in the Dakar region (Senegal)

2021 ◽  
Vol 17 (1) ◽  
pp. 052-060
Author(s):  
Mamadou Sidybe ◽  
Modou Fall Gueye ◽  
Sokhna Mboup ◽  
Ibou Diop ◽  
Mame Samba Mbaye ◽  
...  
Keyword(s):  
Science And Technology ◽  
Botanical Garden ◽  
Species Level ◽  
Forest Park ◽  
Ecological Characteristics ◽  
Biosystematic Study ◽  
Differential Characters ◽  
The Common ◽  
Systematic Group ◽  
Pharmacological Potential

In Senegal, fungi constitute a large and diverse systematic group. However, despite their numerous food and pharmacological potential, few studies have been devoted to this group, particularly carpophore fungi. This work is a contribution to the knowledge of macromycetes in Senegal. It specifically proposes to determine the structure of the fungi on the prospected sites and to propose identification tools. Inventories were made at four (4) sites: two sites in Cheikh Anta DIOP University of Dakar (Botanical Garden, Faculty of Science and Technology and that of Faculty of Medicine), the Forest Park of Hann and the classified forest of Mbao. The identification and description of the samples were carried out based on macroscopic and ecological characteristics. This methodology allowed us to identify (15) morphotypes distributed in 2 subclasses of the Basidiomycetes class. They belong to 5 orders (Agaricales, Pluteales, Trichlomatales, Phallales, Gasterales), 7 families (Agaricaceae, Lepiotaceae, Pluteaceae, Marasmiaceae, Termitomycetaceae, Phallaceae, Sclerodermataceae) and 8 genera. Among these morphotypes, four (4) are identified down to the species level (Phallus roseus, Podaxis pistillaris, Micropsalliota cf elata and Scleroderma auriculatum) and 11 down to the genus. In this fungi group, the genus Termitomyces dominates with five (5) species, followed by the genus Volvaria with three (3) species. This work made it possible to bring out the common and differential characters between the species. It then appeared that the mode of insertion of the foot is the only characteristic common to all species. In addition, the identification of discriminating characteristics made it possible to develop a key for determining all the species inventoried.

scholarly journals The emergence of SARS-CoV-2 by an unusual genome reconstitution

2020 ◽  
Author(s):  
Seong-Tshool Hong ◽  
Md. Mehedi Hassan ◽  
Shirina Sharmin ◽  
Jinny Hong ◽  
Hoi-Seon Lee ◽  
...  
Keyword(s):  
Amino Acids ◽  
Phylogenetic Analysis ◽  
Pairwise Comparison ◽  
Surface Protein ◽  
Plasmodium Malariae ◽  
Spike Protein ◽  
Genome Sequences ◽  
The World ◽  
The Common ◽  
Virus Strains

Abstract SARS-CoV-2 has been spreading remarkedly fast around the world since its emergence while the origin of the virus remains ambiguous. Here, we constructed all of the original prototype genome sequences of SARS-CoV-2 by selecting the common nucleotide among the different virus strains with species. Phylogenetic analysis on the prototype sequences showed that SARS-CoV-2 was a direct descendant of Bat-CoV and was closely related to Pan-CoV, Bat-SL-CoV, and SARS-CoV. The pairwise comparison of SARS-CoV-2 with Bat-CoV showed an unusual replacement of the motif consisting of 7 amino acids within the spike protein of SARS-CoV-2. Database searches showed that the motif originated from a surface protein of Plasmodium malariae, suggesting that the SARS-CoV-2 was emerged after acquiring the motif of the malaria surface protein.

scholarly journals When decisions on homologous structures cause ambiguous taxa relationships: the Neomorphinae (Aves, Cuculidae) example

2010 ◽  
Vol 70 (1) ◽  
pp. 195-204 ◽  
Author(s):  
SR. Posso ◽  
RJ. Donatelli
Keyword(s):  
Phylogenetic Analysis ◽  
Systematic Position ◽  
Morphological Features ◽  
Phylogenetic Study ◽  
Comprehensive Description ◽  
Morphological Studies ◽  
Cranial Osteology

The anatomy of Neomorphinae is poorly understood and the systematics of this sub-family is also the most controversial of the cuckoo taxa, mainly with regard to the systematic position of Tapera and Dromococcyx. In this study, morphological similarities of the Neomorphinae are discussed after a comprehensive description of the cranial osteology was conducted in seven species, embracing all the Neomorphinae genera. This description is followed by comparisons with other cuckoos in order to contribute to the anatomy and systematics of this sub-family. In this way, we provide illustrations that enable the osteological descriptions and the proposed primary homologies to be visualised and compared. Even though Neomorphinae species share many cranial osteological characteristics, there are some anatomical divergences that allowed us to divide them into two distinct groups: (Dromococcyx/Tapera) and (Morococcyx(Neomorphus/Geococcyx )). After comparisons among all cuckoos this study suggests that Neomorphinae are more similar to Crotophaginae and Couinae than to other sub-families of cuckoos. Our results contrast with a recent phylogenetic study based on morphological features, mainly because alternative interpretations to the primary osteological homologies in this study grouped Tapera and Dromococcyx with Cuculinae. Although morphological studies can be used in phylogenetic analysis, we demonstrated here that decisions in the interpretation of the homologies can provide ambiguous results.

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