scholarly journals Lokale Anpassung bei Waldbaumarten: genetische Prozesse und Bedeutung im Klimawandel

2016 ◽  
Vol 167 (6) ◽  
pp. 333-340
Author(s):  
Christian Rellstab ◽  
Andrea R. Pluess ◽  
Felix Gugerli
Keyword(s):  
Local Adaptation ◽  
Environmental Gradients ◽  
Management Strategies ◽  
Environmental Parameters ◽  
Forest Trees ◽  
Local Conditions ◽  
Genetic Changes ◽  
Association Analyses ◽  
Temperature And Precipitation ◽  
Technological Advances

Local adaptation in forest trees: genetic processes and relevance under climate change Forest trees will have to adapt to future climatic changes, a process that will comprise genetic changes as a key component. Owing to technological advances it is now possible to identify the signature of natural selection and local adaptation in the genome. Environmental association analyses aim at associating adaptive genetic patterns with environmental parameters describing the local habitat. On the basis of such studies – including own investigations using oak and beech in Switzerland –, we show that forest trees are genetically differentiated along various environmental gradients, especially temperature and precipitation. Numerous genes could be found that presumably play a role in the adaptation to such environmental factors. Based on these findings, one could identify trees or stands that are adapted to future local conditions, and respective seed material could be considered in silviculture. Because such approaches are still in their infancy and because genome-environment interactions are complex, management strategies should focus on the preservation of (adaptive) genetic diversity, natural regeneration, and connectivity among stands. This would set the basis for the local adaptation of forest stands to altered environmental conditions by natural processes.

Wet meadows of the alliance Molinion and their environmental gradients in Slovenia

Biologia ◽  
2008 ◽  
Vol 63 (2) ◽  
Author(s):  
Igor Zelnik ◽  
Andraž Čarni
Keyword(s):  
Plant Communities ◽  
Environmental Gradients ◽  
Environmental Parameters ◽  
Nutrient Status ◽  
Soil Parameters ◽  
Soil Reaction ◽  
Mean Annual Temperature ◽  
Wet Meadow ◽  
Organic C ◽  
Temperature And Precipitation

AbstractThe main objective of this study was to examine the relationships between wet meadow plant communities of Molinon alliance and their environmental conditions in Slovenia. The ecology of these communities was analysed in detail. The study provides the data on the vegetation and environmental parameters, the significance of parameters for the plant species composition, most important environmental gradients and differences between plant communities. In all plots the vegetation was recorded and soil parameters were analysed (pH, plant-available P and K, Nt, organic C, C/N ratio, exchangeable Ca2+, Mg2+, K+, Na+, H+, electrical conductivity, base saturation). Other conditions were also considered (e.g., mean annual temperature and precipitation, humidity index, mean Ellenberg moisture and nutrient value) to test possible correlations as well. Vegetation was classified by means of multivariate cluster analysis, while vegetation-site relationships were examined with direct gradient analysis (CCA). Six associations from the Molinon alliance (Selino-Molinietum, Plantagini altissimae-Molinietum, Carici davallianae-Molinietum, Gentiano-Molinietum litoralis, Junco conglomerati-Betonicetum and Sanguisorbo-Festucetum commutatae) were identified and analysed. Soil reaction was identified as most significant environmental parameter explaining the variation of the studied vegetation. There are several statistically significant differences in site conditions between the communities (pH, moisture, nutrient status, Ca2+). The studied associations represent clearly defined ecological units.

scholarly journals Signatures of natural selection in a foundation tree along Mediterranean climatic gradients

2021 ◽  
Author(s):  
João Filipe ◽  
Paul Rymer ◽  
Margaret Byrne ◽  
Giles Hardy ◽  
Richard Mazanec ◽  
...  
Keyword(s):  
Management Strategies ◽  
Enrichment Analysis ◽  
Snp Markers ◽  
Genomic Variation ◽  
Eucalyptus Marginata ◽  
Association Analyses ◽  
Climate Gradients ◽  
Forest Dieback ◽  
Temperature And Precipitation ◽  
Precipitation Regimes

Temperature and precipitation regimes are rapidly changing, resulting in forest dieback and local extinction events, particularly in Mediterranean-type climates. Strategic forest management approaches that enhance forests’ resilience to future climates are urgently required, however adaptation to climates in heterogeneous landscapes with multiple selection pressures may be complex. For widespread trees in Mediterranean-type climates we hypothesized that patterns of local adaptation are associated with climate; precipitation is a stronger factor of adaptation than temperature; functionally related genes show similar signatures of adaptation; and adaptive variants are independently sorting across the landscape. To test our hypotheses, we sampled 28 populations across the geographic and climatic distribution of Eucalyptus marginata (jarrah), in south-west Western Australia, and obtained 13,534 independent single nucleotide polymorphic (SNP) markers across the genome. While overall levels of population differentiation were low (FST=0.04), environmental association analyses found a total of 2,336 unique SNPs potentially associated with five climate variables of temperature and precipitation. Allelic turnover was identified for SNPs associated with temperate seasonality and mean precipitation of the warmest quarter (39.2% and 36.9% deviance explained, respectively), suggesting that both temperature and precipitation are important factors in adaptation. SNPs within similarly function genes, according to gene ontology enrichment analysis, had analogous allelic turnover along climate gradients, while SNPs among temperature and precipitation variables had orthogonal patterns of adaptation. These contrasting patterns of adaptation provide evidence that there may be standing genomic variation adapted to changing climates, providing the substrate needed to promote adaptive management strategies to bolster forest resilience in the future.

scholarly journals Structural and Functional Variations of the Macrobenthic Community of the Adige Basin along the River Continuum

Water ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 451
Author(s):  
Mattias Gaglio ◽  
Vassilis Aschonitis ◽  
Alexandra Nicoleta Muresan ◽  
Fabio Vincenzi ◽  
Giuseppe Castaldelli ◽  
...  
Keyword(s):  
Environmental Gradients ◽  
Environmental Parameters ◽  
Taxonomic Diversity ◽  
Macrobenthic Community ◽  
River Continuum ◽  
Local Conditions ◽  
General Validity ◽  
Functional Richness ◽  
Functional Features ◽  
Community Complexity

Since the publication of the River Continuum Concept (RCC), the capacity of the longitudinal dimension to predict the distribution of species and ecological functions in river networks was discussed by different river theories. The taxonomic structures and functional attributes of macrobenthic communities were investigated along the river continuum in the river Adige network (Northern Italy), with the aim to test the reliability of RCC theory and clarify the relation between structural and functional features in lotic systems. Distance from the spring was found to be most representative proxy among environmental parameters. The analysis highlighted the decrease of biodiversity levels along the river continuum. The decrease of taxonomic diversity corresponded to the loss in functional richness. The abundances of predator and walker taxa, as well as semelparous organisms, declined along the longitudinal gradient, suggesting variations in community complexity and granulometry. Regression models also depicted the presence of disturbed communities in the central section of the basin, where intensive agricultural activities occur, that affected environmental gradients. Overall, results offered evidences that the river continuum may predict macrobenthic community structures in terms of taxonomic diversity, thus confirming the general validity of RCC. Nonetheless, the functional analysis did not provide equally clear evidences to support the theory. After four decades from its postulation, the RCC is still a reliable model to predict the general macroinvertebrates distribution. However, community functions may respond to a number of local factors not considered in RCC, which could find a declination in other theories. The relations between structural and functional features confirmed to be complex and sensitive to disturbances and local conditions.

scholarly journals The use of linear mixed effects models to investigate local adaptation in marine fish subpopulations: case study, changing spawning times of common sole (Solea solea)

2019 ◽  
Vol 76 (7) ◽  
pp. 2297-2304
Author(s):  
Jennifer I Fincham ◽  
Jon Barry
Keyword(s):  
Local Adaptation ◽  
Fisheries Management ◽  
Mixed Model ◽  
Linear Mixed Model ◽  
Environmental Gradients ◽  
Management Strategies ◽  
Marine Species ◽  
Window Analysis ◽  
North East ◽  
The North

Abstract Populations along environmental gradients have the potential to adapt to their own local environments. It is important to understand these adaptations in fisheries stocks to fully inform fisheries management strategies. With this is mind, sea temperatures are an important cue in timing for many marine species, including sole in the North-East Atlantic Ocean. We used spawning data and modelled sea surface temperature (SST) data from sole subpopulations to examine the possibility of local adaptation of their spawning times to rising temperature. Climate window analysis was used, in a linear mixed model using mean spawning week and SST, to investigate statistically significant differences between subpopulations of sole. There was no evidence of local adaptation to changing temperatures for these subpopulations. This suggests that their spawning-time reaction to changing temperatures is currently due to their subpopulation’s mean plasticity. Using climate window analysis and modelled temperature data we have demonstrated a method of examining spawning changes in marine populations along a temperature gradient. Recruitment and spawning success are key elements of fisheries population models which contribute to fisheries management. Further understanding of the influence of temperature on recruitment will help inform future modelling.

scholarly journals Convergent evolution in Arabidopsis halleri and Arabidopsis arenosa on calamine metalliferous soils

2018 ◽  
Author(s):  
Veronica Preite ◽  
Christian Sailer ◽  
Lara Syllwasschy ◽  
Sian Bray ◽  
Ute Krämer ◽  
...  
Keyword(s):  
Convergent Evolution ◽  
Arabidopsis Halleri ◽  
Individual Genome ◽  
Genetic Changes ◽  
Association Analyses ◽  
Systematic Testing ◽  
Related Plant ◽  
Arabidopsis Arenosa ◽  
Species Specific ◽  
Degree Of Convergence

AbstractIt is a plausible hypothesis that parallel adaptation events to the same environmental challenge should result in genetic changes of similar or identical effects, depending on the underlying fitness landscapes. However, systematic testing of this is scarce. Here we examine this hypothesis in two closely related plant species, Arabidopsis halleri and Arabidopsis arenosa, which co-occur at two calamine metalliferous sites harbouring toxic levels of the heavy metals zinc and cadmium. We conduct individual genome resequencing alongside soil elemental analysis for 64 plants from 8 populations on metalliferous and non-metalliferous soils, and identify genomic footprints of selection and local adaptation. Selective sweep and environmental association analyses indicate a modest degree of gene as well as functional network convergence, whereby the proximal molecular factors mediating this convergence mostly differ between site pairs and species. Notably, we observe repeated selection on identical SNPs in several A. halleri genes at two independently colonized metalliferous sites. Our data suggest that species-specific metal handling and other biological features could explain a low degree of convergence between species. The parallel establishment of plant populations on calamine metalliferous soils involves convergent evolution, which will likely be more pervasive across sites purposely chosen for maximal similarity in soil composition.

scholarly journals New insights on adaptation and population structure of cork oak using genotyping by sequencing

2018 ◽  
Author(s):  
F. Pina-Martins ◽  
J. Baptista ◽  
G. Pappas ◽  
O. S. Paulo
Keyword(s):  
Local Adaptation ◽  
Tree Species ◽  
Evolutionary History ◽  
Genotyping By Sequencing ◽  
Climatic Changes ◽  
Cork Oak ◽  
Ecological Modelling ◽  
Local Context ◽  
Evergreen Forest ◽  
Local Conditions

AbstractSpecies respond to global climatic changes in a local context. Understanding this process is paramount due to the pace of these changes. Tree species are particularly interesting to study in this regard due to their long generation times, sedentarism, and ecological and economic importance. Quercus suber L. is an evergreen forest tree species of the Fagaceae family with an essentially Western Mediterranean distribution. Despite frequent assessments of the species’ evolutionary history, large-scale genetic studies have mostly relied on plastidial markers, whereas nuclear markers have been used on studies with locally focused sampling strategies. The potential response of Q. suber to global climatic changes has also been studied, under ecological modelling. In this work, “Genotyping by Sequencing” (GBS) is used to derive 2,547 SNP markers to assess the species’ evolutionary history from a nuclear DNA perspective, gain insights on how local adaptation may be shaping the species’ genetic background, and to forecast how Q. suber may respond to global climatic changes from a genetic perspective. Results reveal an essentially unstructured species, where a balance between gene flow and local adaptation keeps the species’ gene pool somewhat homogeneous across its distribution, but at the same time allows variation clines for the individuals to cope with local conditions. “Risk of Non-Adaptedness” (RONA) analyses, suggest that for the considered variables and most sampled locations, the cork oak does not require large shifts in allele frequencies to survive the predicted climatic changes. However, more research is required to integrate these results with those of ecological modelling.

scholarly journals Nanopore amplicon sequencing reveals molecular convergence and local adaptation of opsin genes

2020 ◽  
Author(s):  
Katherine M. Eaton ◽  
Moisés A. Bernal ◽  
Nathan J.C. Backenstose ◽  
Trevor J. Krabbenhoft
Keyword(s):  
Local Adaptation ◽  
Environmental Gradients ◽  
Parallel Evolution ◽  
Amplicon Sequencing ◽  
Species Flock ◽  
Closely Related Species ◽  
Oxford Nanopore ◽  
Opsin Genes ◽  
Potential Case ◽  
Species Specific

AbstractLocal adaptation can drive diversification of closely related species across environmental gradients and promote convergence of distantly related taxa that experience similar conditions. We examined a potential case of adaptation to novel visual environments in a species flock (Great Lakes salmonids, genus Coregonus) using a new amplicon genotyping protocol on the Oxford Nanopore Flongle. Five visual opsin genes were amplified for individuals of C. artedi, C. hoyi, C. kiyi, and C. zenithicus. Comparisons revealed species-specific differences in the coding sequence of rhodopsin (Tyr261Phe substitution), suggesting local adaptation by C. kiyi to the blue-shifted depths of Lake Superior. Parallel evolution and “toggling” at this amino acid residue has occurred several times across the fish tree of life, resulting in identical changes to the visual systems of distantly related taxa across replicated environmental gradients. Our results suggest that ecological differences and local adaptation to distinct visual environments are strong drivers of both evolutionary parallelism and diversification.

scholarly journals Is Digital Health Intervention Effective in Inflammatory Bowel Disease Patients?

2021 ◽  
pp. 1-2
Author(s):  
Bilge Roj Gunerhanal ◽  
Merve Guney-Coskun
Keyword(s):  
Inflammatory Bowel Disease ◽  
Quality Of Care ◽  
Health Monitoring ◽  
Bowel Disease ◽  
Digital Health ◽  
Management Strategies ◽  
Care Quality ◽  
Technological Advances ◽  
Inflammatory Bowel

Technological advances now permit self-management strategies using mobile applications which could greatly benefit patient care. The purpose of this study was to investigate whether the use of the inflammatory bowel disease (IBD) digital health monitoring platform, HealthPROMISE, leads to better quality of care and improved health outcomes in IBD patients. IBD patients were recruited in gastroenterology clinics and asked to install the HealthPROMISE application onto their smartphones. Patient satisfaction, quality of care, quality of life, patient symptoms, and resource utilization metrics were collected throughout the study and sent directly to their healthcare teams. Patients with abnormal symptom/SIBDQ scores were flagged for their physicians to follow up. After one-year, patient outcome metrics were compared to baseline values. Overall, out of 59 patients enrolled in the study, 32 patients (54%) logged into the application at least once during the study period. The number of IBD-related ER visits/hospitalizations in the year of use compared to the prior year demonstrated a significant decrease from 25% of patients (8/32) to 3% (1/32) (p = 0.03). Patients also reported an increase in their understanding of the nature/causes of their condition after using the application (p = 0.026). No significant changes were observed in the number of quality indicators met (p = 0.67) or in SIBDQ scores (p = 0.48). Given the significant burden of IBD, there is a need to develop effective management strategies. This study demonstrated that digital health monitoring platforms may aid in reducing the number of ER visits and hospitalizations in IBD patients.

scholarly journals Do Differences in Latitudinal Distributions of Species and Organelle Haplotypes Reflect Thermal Reaction Norms Within the Emiliania/Gephyrocapsa Complex?

2021 ◽  
Vol 8 ◽  
Author(s):  
Peter von Dassow ◽  
Paula Valentina Muñoz Farías ◽  
Sarah Pinon ◽  
Esther Velasco-Senovilla ◽  
Simon Anguita-Salinas
Keyword(s):  
Local Adaptation ◽  
Coastal Upwelling ◽  
Environmental Gradients ◽  
Reaction Norm ◽  
Emiliania Huxleyi ◽  
Thermal Reaction ◽  
Reaction Norms ◽  
Thermal Niche ◽  
Significant Difference ◽  
The Difference

The cosmopolitan phytoplankter Emiliania huxleyi contrasts with its closest relatives that are restricted to narrower latitudinal bands, making it interesting for exploring how alternative outcomes in phytoplankton range distributions arise. Mitochondrial and chloroplast haplogroups within E. huxleyi are shared with their closest relatives: Some E. huxleyi share organelle haplogroups with Gephyrocapsa parvula and G. ericsonii which inhabit lower latitudes, while other E. huxleyi share organelle haplogroups with G. muellerae, which inhabit high latitudes. We investigated whether the phylogeny of E. huxleyi organelles reflects environmental gradients, focusing on the Southeast Pacific where the different haplogroups and species co-occur. There was a high congruence between mitochondrial and chloroplast haplogroups within E. huxleyi. Haplogroup II of E. huxleyi is negatively associated with cooler less saline waters, compared to haplogroup I, both when analyzed globally and across temporal variability at the small special scale of a center of coastal upwelling at 30° S. A new mitochondrial haplogroup Ib detected in coastal Chile was associated with warmer waters. In an experiment focused on inter-species comparisons, laboratory-determined thermal reaction norms were consistent with latitudinal/thermal distributions of species, with G. oceanica exhibiting warm thermal optima and tolerance and G. muellerae exhibiting cooler thermal optima and tolerances. Emiliania huxleyi haplogroups I and II tended to exhibit a wider thermal niche compared to the other Gephyrocapsa, but no differences among haplogroups within E. huxleyi were found. A second experiment, controlling for local adaptation and time in culture, found a significant difference between E. huxleyi haplogroups. The difference between I and II was of the expected sign, but not the difference between I and Ib. The differences were small (≤1°C) compared to differences reported previously within E. huxleyi by local adaptation and even in-culture evolution. Haplogroup Ib showed a narrower thermal niche. The cosmopolitanism of E. huxleyi might result from both wide-spread generalist phenotypes and specialist phenotypes, as well as a capacity for local adaptation. Thermal reaction norm differences can well explain the species distributions but poorly explain distributions among mitochondrial haplogroups within E. huxleyi. Perhaps organelle haplogroup distributions reflect historical rather than selective processes.

Sign in / Sign up

Export Citation Format

Share Document