scholarly journals Increase of the genetic diversity of the germplasm bank of Cactus pear using RAPD molecular markers

Phyton ◽  
2012 ◽  
Vol 81 (1) ◽  
pp. 143-148
Author(s):  
Escalante-Gonz醠ez JG ◽  
EA Garc韆-Zambrano ◽  
A Guti閞rez-Diez ◽  
RE V醶quez-Alvarado ◽  
JA Torres-Castillo ◽  
...  
Author(s):  
Luiz Sergio Costa Duarte Filho ◽  
Danielson Ramos Ribeiro ◽  
Allison Vieira da Silva

The species Myrciaria floridunda O. Berg, popularly known as cambuí, belongs to the Myrtaceae family. Cambui is a native, non-endemic species that occur in diverse environments in Central America and South America. They are slow-growing plants with a shrub or sub-shrub habit. The fruits, the product of interest of the species, are small, spherical berries orange or red in colorturning to wine colorwhen they are ripe. The exploitation of the species is still mostly extractivist, carried out by traditional local families who, in times of fruiting of the species, leverage their income by selling fruits at fairs. The fruits can be eaten fresh, in the form of jellies, liquor or wine. To study the genetic diversity of the species using ISSR-type molecular markers, it is necessary to first isolate DNA in sufficient quality and quantity. Here, leaves for DNA extraction were collected from the active germplasm bank of the Federal University of Alagoas, Brazil. The DNA of the species was extracted using CTAB detergent methodology with modifications adapted to the species. Twelve ISSR primers were tested on DNA from two cambui genotypes. Of the twelve primers, eight were selected due to their polymorphism index above 50%, namely: UFAL-2, UFAL-3, UFAL-5, UFAL-6, UFAL-7, UFAL-8, UFAL-9 and UFAL-10.


OENO One ◽  
2013 ◽  
Vol 47 (4) ◽  
pp. 261
Author(s):  
Emilia Díaz-Losada ◽  
Sandra Cortés-Diéguez ◽  
Inmaculada Rodríguez-Torres ◽  
José Manuel Mirás-Avalos ◽  
Ignacio Orriols-Fernández ◽  
...  

<p style="text-align: justify;"><strong>Aims</strong>: This work contributes to the knowledge of the genetic diversity of <em>Vitis vinifera</em> L. with the characterization of the non-referenced cultivar ‘Albilla’ by ampelographic description and molecular markers. This will be useful for the preservation, identification and propagation of this cultivar in the future.</p><p style="text-align: justify;"><strong>Methods and results</strong>: Six microsatellites (SSRs), 55 OIV (International Organisation of Vine and Wine) morphological descriptors and 45 phylometric traits were evaluated in two accessions of ‘Albilla’ preserved in the Germplasm Bank of EVEGA (Estación de Viticultura e Enoloxía de Galicia), Xunta de Galicia. Additionally, we set out to determine whether this cultivar was distinct from the yet uncharacterized ‘Albillo’ cultivars found in the Canary Islands. These methods allowed us to describe the cultivar known as ‘Albilla’ and to compare it with other homonym cultivars.</p><p style="text-align: justify;"><strong>Conclusions</strong>: The ‘Albilla’ cultivar is different from other genotypes denominated ‘Albillo’ and any other genotype described until now. This may indicate that it could be an autochthonous cultivar from Galicia.</p><p style="text-align: justify;"><strong>Significance and impact of the study</strong>: The characterization of cultivars is still necessary in order to identify any homonyms or synonyms, develop measures for their conservation (germplasm collection) and evaluate their potential for producing quality wines.</p>


2013 ◽  
Vol 35 (3) ◽  
pp. 799-808 ◽  
Author(s):  
Patrícia Coelho de Souza Leão ◽  
Cosme Damião Cruz ◽  
Sérgio Yoshimitsu Motoike

The purpose of this research was to study the genetic diversity and genetic relatedness of 60 genotypes of grapevines derived from the Germplasm Bank of Embrapa Semiárido, Juazeiro, BA, Brazil. Seven previously characterized microsatellite markers were used: VVS2, VVMD5, VVMD7, VVMD27, VVMD3, ssrVrZAG79 and ssrVrZAG62. The expected heterozygosity (He) and polymorphic information content (PIC) were calculated, and the cluster analysis were processed to generate a dendrogram using the algorithm UPGMA. The He ranged from 81.8% to 88.1%, with a mean of 84.8%. The loci VrZAG79 and VVMD7 were the most informative, with a PIC of 87 and 86%, respectively, while VrZAG62 was the least informative, with a PIC value of 80%. Cluster analysis by UPGMA method allowed separation of the genotypes according to their genealogy and identification of possible parentage for the cultivars 'Dominga', 'Isaura', 'CG 26916', 'CG28467' and 'Roni Redi'.


2012 ◽  
Vol 47 (8) ◽  
pp. 1095-1102 ◽  
Author(s):  
Víctor Pecina‑Quintero ◽  
José Luis Anaya‑López ◽  
Alfredo Zamarripa‑Colmenero ◽  
Noe Montes‑García ◽  
Carlos Nuñez‑Colín ◽  
...  

The objective of this work was to evaluate the diversity and genetic relationships between lines and varieties of the sweet sorghum (Sorghum bicolor) germplasm bank of the National Institute for Forestry, Agriculture and Livestock Research, Mexico, using AFLP and SSR markers. The molecular markers revealed robust amplification profiles and were able to differentiate the 41 genotypes of sweet sorghum evaluated. Analysis of the frequency and distribution of polymorphic fragments allowed for the detection of unique (AFLP) and rare (SSR) alleles in several genotypes (RBSS‑8, RBSS‑9, RBSS‑25, RBSS‑32, and RBSS‑37), indicating that these markers may be associated with a feature that has not yet been determined or may be useful for the identification of these genotypes. The genetic relationships indicated the presence of at least two types of sweet sorghum: a group of modern genotypes used for sugar and biofuel production, and another group consisting of historic and modern genotypes used for the production of syrups. Sweet sorghum genotypes may be used to develop new varieties with higher sugar and juice contents.


HortScience ◽  
1998 ◽  
Vol 33 (3) ◽  
pp. 492f-493
Author(s):  
Roberto F. Vieira ◽  
James E. Simon ◽  
Peter Goldsbrough ◽  
Antonio Figueira

Essential oils extracted from basil (Ocimum spp.) by steam distillation are used to flavor foods, oral products, in fragrances, and in traditional medicines. The genus Ocimum contains around 30 species native to the tropics and subtropics, with some species naturalized and/or cultivated in temperate areas. Interand intraspecific hybridization have created significant confusion in the botanical systematics of this genus. Taxonomy of basil (O. basilicum) is also complicated by the existence of numerous varieties, cultivars, and chemotypes within the species that do not differ significantly in morphology. In this study we are using RAPD markers and volatile oil composition to characterize the genetic diversity among the most economically important Ocimum species. We hypothesize that the genetic similarity revealed by molecular markers will more accurately reflect the morphological and chemical differences in Ocimum than essential oil composition per se. Preliminary research using five Ocimum species, four undetermined species, and eight varieties of O. basilicum (a total of 19 accessions) generated 107 polymorphic fragments amplified with 19 primers. RAPDs are able to discriminate between Ocimum species, but show a high degree of similarity between O. basilicum varieties. The genetic distance between nine species and among 55 accessions within the species O. americanum, O. basilicum, O. campechianum, O. × citriodorum, O. gratissimum, O. kilimandscharium, O. minimum, O. selloi, and O. tenuiflorum will be analyzed by matrix of similarity and compared to the volatile oil profile. This research will for the first time apply molecular markers to characterize the genetic diversity of Ocimum associate with volatile oil constituent.


2021 ◽  
Vol 48 (3) ◽  
pp. 2253-2260
Author(s):  
Lameck A. Nyabera ◽  
Inosters W. Nzuki ◽  
Steven M. Runo ◽  
Peris W. Amwayi

2012 ◽  
Vol 92 (6) ◽  
pp. 1121-1133 ◽  
Author(s):  
S. C. Debnath ◽  
Y. L. Siow ◽  
J. Petkau ◽  
D. An ◽  
N. V. Bykova

Debnath, S. C., Siow, Y. L., Petkau, J., An, D. and Bykova, N. V. 2012. Molecular markers and antioxidant activity in berry crops: Genetic diversity analysis. Can. J. Plant Sci. 92: 1121–1133. An improved understanding of important roles of dietary fruits in maintaining human health has led to a dramatic increase of global berry crop production. Berry fruits contain relatively high levels of vitamin C, cellulose and pectin, and produce anthocyanins, which have important therapeutic values, including antitumor, antiulcer, antioxidant and anti-inflammatory activities. There is a need to develop reliable methods to identify berry germplasm and assess genetic diversity/relatedness for dietary properties in berry genotypes for practical breeding purposes through genotype selection in a breeding program for cultivar development, and proprietary-rights protection. The introduction of molecular biology techniques, such as DNA-based markers, allows direct comparison of different genetic materials independent of environmental influences. Significant progress has been made in diversity analysis of wild cranberry, lowbush blueberry, lingonberry and cloudberry germplasm, and in strawberry and raspberry cultivars and advanced breeding lines developed in Canada. Inter simple sequence repeat (ISSR) markers detected an adequate degree of polymorphism to differentiate among berry genotypes, making this technology valuable for cultivar identification and for the more efficient choice of parents in the current berry improvement programs. Although multiple factors affect antioxidant activity, a wide range of genetic diversity has been reported in wild and cultivated berry crops. Diversity analysis based on molecular markers did not agree with those from antioxidant activity. The paper also discusses the issues that still need to be addressed to utilize the full potential of molecular techniques including expressed sequence tag-polymerase chain reaction (EST-PCR) analysis to develop improved environment-friendly berry cultivars suited to the changing needs of growers and consumers.


2012 ◽  
Vol 53 (4) ◽  
pp. 298-303 ◽  
Author(s):  
Javad Rezapour Fard ◽  
Zabihollah Zamani ◽  
Mohamad Reza Fattahi Moghaddam ◽  
Mohsen Kafi

Sign in / Sign up

Export Citation Format

Share Document