scholarly journals Implications of Seed Vault Storage Strategies for Conservation of Seed Bacterial Microbiomes

2021 ◽  
Vol 12 ◽  
Author(s):  
Ankush Chandel ◽  
Ross Mann ◽  
Jatinder Kaur ◽  
Sally Norton ◽  
Jacqueline Edwards ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Storage Temperature ◽  
Plant Genetic Resources ◽  
Bacterial Community Composition ◽  
Seed Storage ◽  
Storage Condition ◽  
Storage Conditions ◽  
Bacterial Composition ◽  
Subsequent Storage ◽  
The Impact

Global seed vaults are important, as they conserve plant genetic resources for future breeding to improve crop yield and quality and to overcome biotic and abiotic stresses. However, little is known about the impact of standard storage procedures, such as seed drying and cold storage on the seed bacterial community, and the ability to recover seed-associated bacteria after storage. In this study, soybean [Glycine max (L.) Merr.] seeds were analyzed to characterize changes in the bacterial community composition and culturability under varying storage conditions. The G. max bacterial microbiome was analyzed from undried seed, dried seed, and seed stored for 0, 3, 6, and 14months. Storage temperatures consisted of −20°C, 4°C, and room temperature (RT), with −20°C being commonly used in seed storage vaults globally. The seed microbiome of G. max was dominated by Gammaproteobacteria under all conditions. Undried seed was dominated by Pantoea (33.9%) and Pseudomonas (51.1%); however, following drying, the abundance of Pseudomonas declined significantly (0.9%), Pantoea increased significantly (73.6%), and four genera previously identified including Pajaroellobacter, Nesterenkonia, env.OPS_17, and Acidibacter were undetectable. Subsequent storage at RT, 4, or −20°C maintained high-abundance Genera at the majority of time points, although RT caused greater fluctuations in abundances. For many of the low-abundance Genera, storage at −20°C resulted in their gradual disappearance, whereas storage at 4°C or RT resulted in their more rapid disappearance. The changes in seed bacterial composition were reflected by cultured bacterial taxa obtained from the stored G. max seed. The main taxa were largely culturable and had similar relative abundance, while many, but not all, of the low-abundance taxa were also culturable. Overall, these results indicate that the initial seed drying affects the seed bacterial composition, suggesting that microbial isolation prior to seed drying is recommended to conserve these microbes. The standard seed storage condition of −20°C is most suitable for conservation of the bacterial seed microbiome, as this storage temperature slows down the loss of seed bacterial diversity over longer time periods, particularly low-abundance taxa.

scholarly journals Experimental investigation of compression strength of ventilated corrugated citrus packaging

2017 ◽  
Vol 2 (1) ◽  
pp. 22-27 ◽  
Author(s):  
Pankaj B. Pathare ◽  
Tarl M. Berry ◽  
Umezuruike Linus Opara
Keyword(s):  
Compressive Strength ◽  
Moisture Content ◽  
Compression Strength ◽  
Mechanical Performance ◽  
Storage Temperature ◽  
Citrus Fruit ◽  
Storage Condition ◽  
Storage Conditions ◽  
Airflow Distribution ◽  
Postharvest Handling

Abstract Ventilated corrugated paperboard packaging is the most widely type of packaging used in postharvest handling and transportation of fresh horticultural produce, during which the package may be exposed to different environmental conditions. Ventilated packages should be designed in such a way that they can provide uniform airflow distribution without compromising mechanical integrity. This study investigated the effects of different storage conditions (−0.5°C at 90% RH; 4°C at 90% RH, 10° C at 90% RH) on the mechanical performance of two types of ventilated packaging [‘Supervent’ (4.7% vent area) and ‘Standard’ (3.1% vent area)] used for handling citrus fruit. The effects of storage condition on moisture content of package was also studied. Standard packaging showed higher compression strength than supervent packaging, presumably due to less vent area on the package. Maximum compressive strength reduction was found at storage temperature 4°C for both packages. The compressive strength of both packages decreased with increase in moisture content.

scholarly journals Continuous cropping of cut chrysanthemum reduces rhizospheric soil microbial populations, diversity and network complexity

2021 ◽  
Author(s):  
Jun Li ◽  
Xiaoyu Cheng ◽  
Wei Chen ◽  
Hanjie Zhang ◽  
Tianlang Chen ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Negative Impact ◽  
Bacterial Community Composition ◽  
Shannon Index ◽  
Continuous Cropping ◽  
Soil Microbial Diversity ◽  
Soil Microbial ◽  
Α Diversity ◽  
Soil Bacterial ◽  
The Impact

Abstract Continuous cropping of cut chrysanthemum causes soil degradation and chrysanthemum quality decline, but the biotic and abiotic mechanisms behind it remain unclear. This impedes our ability to assess the true effects of continuous cropping on agricultural soil functions and our ability to repair impaired soils. Here we examined the impact of different replanting years on microbial communities and enzyme activities in rhizosphere soil of cut chrysanthemum (Chrysanthemum morifolium). Our results showed that soil total nitrogen (TN) and organic carbon (SOC) contents were significantly lower in the soil with 12 years of continuous cropping (Y12) than that in the soil with 1 year of cropping (Y1). Compared with Y1, Y12 treatment decreased alkaline phosphatase and β -glucosidase by 12.1 and 24.4%, but increased the activities of soil urease and catalase by 98.2 and 34.8%, respectively. Soil bacterial populations in Y6 (continuous cropping for 6 years) and Y12 treatments decreased by 52.3 and 87.5% compared with that in Y1 treatment. Moreover, the bacterial α-diversity (Shannon index) significantly decreased by 37.3 and 57.6% over 6 and 12 years of continuous cropping, respectively. Long-term monoculture cropping shifted the bacterial community composition, with decreased abundances of dominant phyla such as Proteobacteria and Acidobacteria, but with an increase in the relative abundances of Actinobacteria and Chloroflexi, and Gemmatimonadetes. Moreover, Y6 and Y12 treatments harbored less microbial network complexity, lower bacterial taxa, and fewer linkages among bacterial taxa, relative to Y1. Soil pH, SOC, and TN were the main edaphic factors affecting soil bacterial community compositions and diversity. Overall, our results demonstrate that continuous cropping has a significant negative impact on soil microbial diversity and complexity.

scholarly journals Effects of shade stress on morphophysiology and rhizosphere soil bacterial communities of two contrasting shade-tolerant turfgrasses

2019 ◽  
Author(s):  
Juanjuan Fu ◽  
Yilan Luo ◽  
Pengyue Sun ◽  
Jinzhu Gao ◽  
Donghao Zhao ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Plant Growth ◽  
Bacterial Communities ◽  
Shade Tolerance ◽  
Rhizosphere Soil ◽  
Photosynthetic Capacity ◽  
Bacterial Community Composition ◽  
Soil Microbial Communities ◽  
Soil Bacterial ◽  
The Impact

Abstract Background: Shade presents one of the major abiotic limitations for turfgrass growth. Shade influences plant growth and alters plant metabolism, yet little is known about how shade affects the structure of rhizosphere soil microbial communities and the role of soil microorganisms in plant shade responses. In this study, a glasshouse experiment was conducted to examine the impact of shade stress on the growth and photosynthetic capacity of two contrasting shade-tolerant turfgrasses, shade-tolerant dwarf lilyturf (Ophiopogon japonicus, OJ) and shade-intolerant perennial turf-type ryegrass (Lolium perenne, LP). We also examined soil-plant feedback effects on shade tolerance in the two turfgrass genotypes. Bacterial community composition was assayed using high-throughput sequencing. Results: Our physiochemical data showed that under shade stress, OJ maintained higher photosynthetic capacity and root growth, thus OJ was found to be more shade-tolerant than LP. Shade-intolerant LP responded better to both shade and soil microbes than shade-tolerant OJ. Shade and live soil decreased LP growth but increased biomass allocation to shoots in the live soil. The plant shade response index of LP is higher in the live soil than sterile soil, driven by weakened soil-plant feedback under shade stress. In contrast, there was no difference in these values for OJ under similar shade and soil treatments. Illumina sequencing data revealed that shade stress had little impact on the diversity of the OJ and LP’s bacterial communities, but instead impacted the composition of bacterial communities. The bacterial communities were mostly composed of Proteobacteria and Acidobacteria in OJ soil. Further pairwise fitting analysis showed that a positive correlation of shade-tolerance in two turfgrasses and their bacterial community compositions. Several soil properties (NO3--N, NH4+-N, AK) showed a tight coupling with several major bacterial communities under shade stress, indicating that they are important drivers determining bacterial community structures. Moreover, OJ shared core bacterial taxa known to promote plant growth and confer tolerance to shade stress, which suggests common principles underpinning OJ-microbe interactions. Conclusion: Plant shade tolerance is mediated by soil-plant feedback and shade-induced changes in rhizosphere soil bacterial community structure in OJ and LP plants.

scholarly journals Anthropogenic Impact on Tropical Perennial River in South India: Snapshot of Carbon Dynamics and Bacterial Community Composition

Water ◽  
2020 ◽  
Vol 12 (5) ◽  
pp. 1354
Author(s):  
Katrin Premke ◽  
Gunasekaran Dharanivasan ◽  
Kristin Steger ◽  
Kai Nils Nitzsche ◽  
Vijayan Jayavignesh ◽  
...  
Keyword(s):  
Water Quality ◽  
Bacterial Community ◽  
Community Composition ◽  
Bacterial Community Composition ◽  
Cauvery River ◽  
Main River ◽  
Warning Limits ◽  
Induced Changes ◽  
Riverine Systems ◽  
The Impact

Riverine systems play an important role in the global carbon cycle, and they are considered hotspots for bacterial activities such as organic matter decomposition. However, our knowledge about these processes in tropical or subtropical regions is limited. The aim of this study was to investigate anthropogenically induced changes of water quality, the distribution of selected pharmaceuticals, and the effects of pollution on greenhouse gas concentrations and bacterial community composition along the 800 km long Cauvery river, the main river serving as a potable and irrigation water supply in Southern India. We found that in situ measured pCO2 and pCH4 concentrations were supersaturated relative to the atmosphere and ranged from 7.9 to 168.7 μmol L−1, and from 0.01 to 2.76 μmol L−1, respectively. Pharmaceuticals like triclosan, carbamazepine, ibuprofen, naproxen, propylparaben, and diclofenac exceeded warning limits along the Cauvery. Proteobacteria was the major phylum in all samples, ranging between 26.1% and 82.2% relative abundance, and it coincided with the accumulation of nutrients in the flowing water. Results emphasized the impact of industrialization and increased population density on changes in water quality, riverine carbon fluxes, and bacterial community structure.

EFFECT OF ANTIBIOTICS AUGMENTATION AND STORAGE CONDITION ON IMPACT RESISTANCE OF ORTHOPEDIC BONE CEMENT

2017 ◽  
Vol 17 (01) ◽  
pp. 1750019
Author(s):  
MARYAM KALANTARI ◽  
ATA HASHEMI
Keyword(s):  
Impact Strength ◽  
Bone Cement ◽  
Storage Temperature ◽  
Impact Resistance ◽  
Storage Condition ◽  
Four Point Bending ◽  
Pmma Bone Cement ◽  
Different Temperatures ◽  
Aging Conditions ◽  
The Impact

Antibiotic-impregnated poly(methyl methacrylate) (PMMA) bone cement has been successfully used to treat infected joint arthroplasties and surgeons have advocated the use of antibiotic-treated bone cement to prevent possible infections in joint replacement surgeries. However, there is a concern that this addition may adversely affect the mechanical properties of the bone cement. In most cases, the addition of antibiotics to bone cement has been reported to lower its mechanical strength. The uniaxial, biaxial and three/four point bending tests of antibiotic-impregnated bone cement have been extensively performed and well documented. However, only a few documents have focused on the impact strength of bone cement. The present study reports the impact tests of control and antibiotic loaded bone cements at different temperatures and aging conditions. According to the results, the addition of gentamicin or vancomycin significantly reduced the samples' impact strength. Moreover, the samples aged in saline at 23[Formula: see text]C were more resistant than the samples aged in air at 23[Formula: see text]C. Furthermore, raising the storage temperature from 23[Formula: see text]C to 37[Formula: see text]C significantly lowered the bone cement's impact strength in both control and antibiotic loaded samples.

scholarly journals Sample Dilution and Bacterial Community Composition Influence Empirical Leucine-to-Carbon Conversion Factors in Surface Waters of the World's Oceans

2015 ◽  
Vol 81 (23) ◽  
pp. 8224-8232 ◽  
Author(s):  
Eva Teira ◽  
Víctor Hernando-Morales ◽  
Francisco M. Cornejo-Castillo ◽  
Laura Alonso-Sáez ◽  
Hugo Sarmento ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Bacterial Community Composition ◽  
Nucleic Acid Content ◽  
Carbon Conversion ◽  
Production Rates ◽  
Conversion Factors ◽  
Content Type ◽  
Carbon Production ◽  
The Impact

ABSTRACTThe transformation of leucine incorporation rates to prokaryotic carbon production rates requires the use of either theoretical or empirically determined conversion factors. Empirical leucine-to-carbon conversion factors (eCFs) vary widely across environments, and little is known about their potential controlling factors. We conducted 10 surface seawater manipulation experiments across the world's oceans, where the growth of the natural prokaryotic assemblages was promoted by filtration (i.e., removal of grazers [F treatment]) or filtration combined with dilution (i.e., also relieving resource competition [FD treatment]). The impact of sunlight exposure was also evaluated in the FD treatments, and we did not find a significant effect on the eCFs. The eCFs varied from 0.09 to 1.47 kg C mol Leu−1and were significantly lower in the FD than in the F samples. Also, changes in bacterial community composition during the incubations, as assessed by automated ribosomal intergenic spacer analysis (ARISA), were more pronounced in the FD than in the F treatments, compared to unmanipulated controls. Thus, we discourage the common procedure of diluting samples (in addition to filtration) for eCF determination. The eCFs in the filtered treatment were negatively correlated with the initial chlorophyllaconcentration, picocyanobacterial abundance (mostlyProchlorococcus), and the percentage of heterotrophic prokaryotes with high nucleic acid content (%HNA). The latter two variables explained 80% of the eCF variability in the F treatment, supporting the view that bothProchlorococcusand HNA prokaryotes incorporate leucine in substantial amounts, although this results in relatively low carbon production rates in the oligotrophic ocean.

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