scholarly journals Genetic Diversity and Population Structure of Algerian Endemic Plant Species Avena macrostachya Bal. ex Cross. et Durieu

Agronomy ◽  
2020 ◽  
Vol 10 (12) ◽  
pp. 1984
Author(s):  
Paulina Bolc ◽  
Bogusław Łapiński ◽  
Wiesław Podyma ◽  
Maja Boczkowska

Avena macrostachya is still a relatively unknown species. Using sequence-related amplified polymorphism (SRAP) markers, a simple and inexpensive technique, allowed us to conduct experiments on genetic differentiation and to study the population structure of this Algerian endemic oat. The results obtained showed lower than expected genetic diversity within the A. macrostachya species. The cause may be endemism of the species as well as genetic drift possible during collection, and maintenance of the accessions in gene bank and seed reproduction. No clear genetic structure was found in the examined collection, which indicates a close relationship between the populations collected in the Djurdjura National Park in Algeria. Considering the endemism of the species, its breeding potential and the small-scale ex situ collection, careful monitoring of natural sites and repeating of the collection mission are, therefore, absolutely crucial.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Irshad Ahmad Sofi ◽  
Irfan Rashid ◽  
Javaid Yousuf Lone ◽  
Sandhya Tyagi ◽  
Zafar A. Reshi ◽  
...  

AbstractHabitat loss due to climate change may cause the extinction of the clonal species with a limited distribution range. Thus, determining the genetic diversity required for adaptability by these species in sensitive ecosystems can help infer the chances of their survival and spread in changing climate. We studied the genetic diversity and population structure of Sambucus wightiana—a clonal endemic plant species of the Himalayan region for understanding its possible survival chances in anticipated climate change. Eight polymorphic microsatellite markers were used to study the allelic/genetic diversity and population structure. In addition, ITS1–ITS4 Sanger sequencing was used for phylogeny and SNP detection. A total number of 73 alleles were scored for 37 genotypes at 17 loci for 8 SSRs markers. The population structural analysis using the SSR marker data led to identifying two sub-populations in our collection of 37 S. wightiana genotypes, with 11 genotypes having mixed ancestry. The ITS sequence data show a specific allele in higher frequency in a particular sub-population, indicating variation in different S. wightiana accessions at the sequence level. The genotypic data of SSR markers and trait data of 11 traits of S. wightiana, when analyzed together, revealed five significant Marker-Trait Associations (MTAs) through Single Marker Analysis (SMA) or regression analysis. Most of the SSR markers were found to be associated with more than one trait, indicating the usefulness of these markers for working out marker-trait associations. Moderate to high genetic diversity observed in the present study may provide insurance against climate change to S. wightiana and help its further spread.


2011 ◽  
Vol 49 (5) ◽  
pp. 693-702 ◽  
Author(s):  
Jesús Andrei Rosales-Castillo ◽  
Ma. Soledad Vázquez-Garcidueñas ◽  
Hugo Álvarez-Hernández ◽  
Omar Chassin-Noria ◽  
Alba Irene Varela-Murillo ◽  
...  

PLoS ONE ◽  
2019 ◽  
Vol 14 (2) ◽  
pp. e0211471 ◽  
Author(s):  
Sai Yang ◽  
Shuai Xue ◽  
Weiwei Kang ◽  
Zhuxi Qian ◽  
Zili Yi

2016 ◽  
Vol 15 (4) ◽  
Author(s):  
R. Gwinner ◽  
T.A. Setotaw ◽  
F.A. Rodrigues ◽  
D.V.C. França ◽  
F.A. da Silveira ◽  
...  

2017 ◽  
Author(s):  
José F Domínguez-Contreras ◽  
Adrian Munguia-Vega ◽  
Bertha P Ceballos-Vázquez ◽  
Marcial Arellano-Martínez ◽  
Francisco J García-Rodríguez ◽  
...  

The fishery for octopus in Northwest Mexico has increased to over 2,000 tons annually, but to date the specific composition of the catch has been ignored. With at least three main species with varying life histories targeted by artisanal fisheries in the region, lack of information about the distribution of each species and metapopulation size and structure could impede effective fisheries management to avoid overexploitation. Here we tested if different life histories in three species of octopus help to predict observed patterns of genetic diversity, population dynamics, structure and connectivity that could be relevant to the sustainable management of the fishery. We sequenced two mitochondrial genes and genotyped seven nuclear microsatellite loci to identify the distribution of each species in 20 locations from the Gulf of California and the Pacific coast of the Baja California peninsula. We tested four a priori hypothesis derived from population genetic theory based on differences in the fecundity and dispersal potential for each species. We found that the species with low fecundity and without a planktonic larval stage (Octopus bimaculoides) had lower average effective population size and genetic diversity, but higher levels of kinship, population structure, and richness of private alleles, suggesting limited dispersal and high local recruitment. In contrast, two species with higher fecundity and planktonic larvae (O. bimaculatus, O. hubbsorum) showed higher effective population size and genetic diversity, and overall lower kinship and population structure, supporting higher levels of gene flow over a larger geographical scale. Even among the latter, there were differences in the calculated parameters possibly associated with increased connectivity in the species with the longest planktonic larval duration (O. bimaculatus). We consider that O. bimaculoides could be more susceptible to over exploitation of small, isolated populations that could have longer recovery times, and suggest that management should take place within each local population. For the two species with pelagic larvae, management should consider metapopulation structure over larger geographic scales and the directionality and magnitude of larval dispersal between localities driven by ocean currents. The distribution of each species and variations in their reproductive timing should also be considered when establishing marine reserves or seasonal fishing closures.


PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e10521
Author(s):  
Núria Garcia-Jacas ◽  
Jèssica Requena ◽  
Sergi Massó ◽  
Roser Vilatersana ◽  
Cèsar Blanché ◽  
...  

Seseli farrenyi (Apiaceae) is an extremely narrow endemic plant, which is considered as one of the species of most conservation concern in Catalonia (NW Mediterranean Basin). Given the accelerated fragmentation and reduction of population size (of over 90%), the environmental agency of Catalonia is currently preparing a recovery plan that includes reinforcements of the extant populations. The present study is aimed at providing the necessary knowledge to carry out genetically-informed translocations, by using microsatellites as genetic markers. Fourteen microsatellites have been specifically developed for S. farrenyi, of which nine have been used. Besides the extant natural populations, the three ex situ collections that are known to exist of this species have also been studied, as they would be the donor sources for translocation activities. Our main finding is that levels of genetic diversity in the natural populations of S. farrenyi are still high (He = 0.605), most likely as a result of a predominantly outcrossing mating system in combination with the limited time elapsed since the population decline. However, population fragmentation is showing the first genetic signs, as the values of genetic differentiation are relatively high, and two well-differentiated genetic lineages have been found even in such a narrow geographic range. These genetic results provide important information when designing conservation management measures.


Forests ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 469 ◽  
Author(s):  
Yanwen Deng ◽  
Tingting Liu ◽  
Yuqing Xie ◽  
Yaqing Wei ◽  
Zicai Xie ◽  
...  

Research Highlights: This study is the first to examine the genetic diversity of Michelia shiluensis (Magnoliaceae). High genetic diversity and low differentiation were detected in this species. Based on these results, we discuss feasible protection measures to provide a basis for the conservation and utilization of M. shiluensis. Background and Objectives: Michelia shiluensis is distributed in Hainan and Guangdong province, China. Due to human disturbance, the population has decreased sharply, and there is thus an urgent need to evaluate genetic variation within this species in order to identify an optimal conservation strategy. Materials and Methods: In this study, we used eight nuclear single sequence repeat (nSSR) markers and two chloroplast DNA (cpDNA) markers to assess the genetic diversity, population structure, and dynamics of 78 samples collected from six populations. Results: The results showed that the average observed heterozygosity (Ho), expected heterozygosity (He), and percentage of polymorphic loci (PPL) from nSSR markers in each population of M. shiluensis were 0.686, 0.718, and 97.92%, respectively. For cpDNA markers, the overall haplotype diversity (Hd) was 0.674, and the nucleotide diversity was 0.220. Analysis of markers showed that the genetic variation between populations was much lower based on nSSR than on cpDNA (10.18% and 77.56%, respectively, based on an analysis of molecular variance (AMOVA)). Analysis of the population structure based on the two markers shows that one of the populations (DL) is very different from the other five. Conclusions: High genetic diversity and low population differentiation of M. shiluensis might be the result of rich ancestral genetic variation. The current decline in population may therefore be due to human disturbance rather than to inbreeding or genetic drift. Management and conservation strategies should focus on maintaining the genetic diversity in situ, and on the cultivation of seedlings ex-situ for transplanting back to their original habitat.


2007 ◽  
Vol 85 (7) ◽  
pp. 629-636 ◽  
Author(s):  
Reinaldo Moreira da Silva ◽  
G. Wilson Fernandes ◽  
Maria Bernadete Lovato

The Serra do Espinhaço in Brazil is under continuous and increasing levels of human disturbance. It has a large number of endemic plant species such as Chamaecrista semaphora (Irwin and Barneby), an endangered species with extremely narrow range. We studied the genetic diversity of C. semaphora and compared it with Chamaecrista mucronata (Spreng.) Irwin and Barneby, a widespread congeneric species distributed over the entire Serra do Espinhaço, in an attempt to provide information for conservation strategies. Two populations of C. mucronata and the only two known populations of C. semaphora from Serra do Cipó were screened for variability using random amplified polymorphic DNA (RAPD) markers. Populations of C. semaphora exhibited a lower percentage of polymorphic markers (16.9%) and Shannon’s Diversity Index (H′pop = 0.124) than C. mucronata populations (43.3% and H′pop = 0.299). Most of the genetic variability of both species studied was distributed within populations; C. semaphora populations (ΦST = 0.198) were less divergent than C. mucronata populations (ΦST = 0.378). The risk of extinction for C. semaphora is large owing to its low level of genetic diversity compared with its widespread congener and because of increasing habitat destruction. Both populations of C. semaphora urgently need protection to maximize the genetic diversity of this species and diminish further substantial loss within the populations.


2016 ◽  
Vol 413 (1-2) ◽  
pp. 261-273 ◽  
Author(s):  
Sylvain Boisson ◽  
Michel-Pierre Faucon ◽  
Soizig Le Stradic ◽  
Bastien Lange ◽  
Nathalie Verbruggen ◽  
...  

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