scholarly journals Genetic Dissection of Phosphorous Uptake and Utilization Efficiency Traits Using GWAS in Mungbean

Agronomy ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1401
Author(s):  
Venkata Ravi Prakash Reddy ◽  
Shouvik Das ◽  
Harsh Kumar Dikshit ◽  
Gyan Prakash Mishra ◽  
Muraleedhar S. Aski ◽  
...  
Keyword(s):  
Genome Wide Association Study ◽  
Genotyping By Sequencing ◽  
Dry Weight ◽  
P Uptake ◽  
Utilization Efficiency ◽  
Genetic Dissection ◽  
P Deficiency ◽  
P Utilization ◽  
P Utilization Efficiency ◽  
Phosphorous Uptake

Mungbean (Vignaradiata L. Wilczek) is an early maturing legume grown predominantly in Asia for its protein-rich seeds. P deficiency can lead to several physiological disorders which ultimately result in a low grain yield in mungbean. The genetic dissection of PUpE (Puptake efficiency) and PUtE (P utilization efficiency) traits are essential for breeding mungbean varieties with a high P uptake and utilization efficiency. The study involves an association mapping panel consisting of 120 mungbean genotypes which were phenotyped for total dry weight, P concentration, total P uptake, and P utilization efficiency under low P (LP) and normal P (NP) conditions in a hydroponic system. A genotyping-by-sequencing (GBS) based genome-wide association study (GWAS) approach was employed to dissect the complexity of PUpE and PUtE traits at the genetic level in mungbean. This has identified 116 SNPs in 61 protein-coding genes and of these, 16 have been found to enhance phosphorous uptake and utilization efficiency in mungbeans. We identified six genes with a high expression (VRADI01G04370, VRADI05G20860, VRADI06G12490, VRADI08G20910, VRADI08G00070 and VRADI09G09030) in root, shoot apical meristem and leaf, indicating their role in the regulation of P uptake and utilization efficiency in mungbean. The SNPs present in three genes have also been validated using a Sanger sequencing approach.

scholarly journals Identification of genetic factors controlling phosphorus utilization efficiency in wheat by genome-wide association study with principal component analysis

2020 ◽  
Author(s):  
Luqman Bin Safdar ◽  
Muhammad Jawad Umer ◽  
Fakhrah Almas ◽  
Siraj Uddin ◽  
Qurra-tul-Ain Safdar ◽  
...  
Keyword(s):  
Association Study ◽  
Candidate Genes ◽  
Genetic Factors ◽  
Genome Wide Association Study ◽  
Principal Component ◽  
Utilization Efficiency ◽  
Genome Wide Association ◽  
Genome Wide ◽  
P Utilization ◽  
P Utilization Efficiency

ABSTRACTDespite the economic importance of P utilization efficiency, information on genetic factors underlying this trait remains elusive. To address that, we performed a genome-wide association study in a spring wheat diversity panel ranging from landraces to elite varieties. We evaluated the phenotype variation for P utilization efficiency in controlled conditions and genotype variation using wheat 90K SNP array. Phenotype variables were transformed into a smaller set of uncorrelated principal components that captured the most important variation data. We identified two significant loci associated with both P utilization efficiency and the 1st principal component on chromosomes 3A and 4A: qPE1-3A and qPE2-4A. Annotation of genes at these loci revealed 53 wheat genes, among which 6 were identified in significantly enriched pathways. The expression pattern of these 6 genes indicated that TraesCS4A02G481800, involved in pyruvate metabolism and TCA cycle, had a significantly higher expression in the P efficient variety under limited P conditions. Further characterization of these loci and candidate genes can help stimulate P utilization efficiency in wheat.KEY MESSAGEWe report two new loci for P utilization efficiency on chromosomes 3A and 4A of wheat. The prioritized candidate genes at these loci can be investigated by molecular biology techniques to improve P efficiency in wheat and grass relatives.

scholarly journals   Effect of elevated CO2 and temperature on phosphorus efficiency of wheat grown in an Inceptisol of subtropical India

2012 ◽  
Vol 58 (No. 5) ◽  
pp. 230-235 ◽  
Author(s):  
Manoj-Kumar ◽  
A. Swarup ◽  
A.K. Patra ◽  
J.U. Chandrakala ◽  
K.M. Manjaiah
Keyword(s):  
Grain Yield ◽  
Dry Weight ◽  
P Uptake ◽  
Utilization Efficiency ◽  
Phosphorus Efficiency ◽  
Total Biomass ◽  
P Efficiency ◽  
Plant Parts ◽  
P Fertilizer ◽  
P Utilization

In a phytotron experiment, wheat was grown under two levels of atmospheric CO<sub>2</sub> [ambient (385 ppm) vs. elevated (650 ppm)], two levels of temperature (ambient vs. ambient +3&deg;C) superimposed with three levels of phosphorus (P) fertilization: 0, 100, and 200% of recommended dose. Various measures of P acquisition and utilization efficiency were estimated at crop maturity. In general, dry matter yields of all plant parts increased under elevated CO<sub>2</sub> (EC) and decreased under elevated temperature (ET); however, under concurrently elevated CO<sub>2</sub> and temperature (ECT), root (+36%) and leaf (+14.7%) dry weight increased while stem (&ndash;12.3%) and grain yield (&ndash;17.3%) decreased, leading to a non-significant effect on total biomass yield. Similarly, total P uptake increased under EC and decreased under ET, with an overall increase of 17.4% under ECT, signifying higher P requirements by plants grown thereunder. Although recovery efficiency of applied P fertilizer increased by 27%, any possible benefit of this increase was negated by the reduced physiological P efficiency (PPE) and P utilization efficiency (PUtE) under ECT. Overall, there was ~17% decline in P use efficiency (PUE) (i.e. grain yield/applied P) of wheat under ECT. &nbsp;

scholarly journals Genetic Variation for Traits Related to Phosphorus Use Efficiency in Lens Species at the Seedling Stage

Plants ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 2711
Author(s):  
Vinita Ramtekey ◽  
Ruchi Bansal ◽  
Muraleedhar S. Aski ◽  
Deepali Kothari ◽  
Akanksha Singh ◽  
...  
Keyword(s):  
Primary Root ◽  
Principal Component ◽  
Renewable Resource ◽  
Dry Weight ◽  
P Uptake ◽  
Utilization Efficiency ◽  
Phosphorus Use Efficiency ◽  
Root Tips ◽  
P Deficiency ◽  
Total Dry Weight

Phosphorus (P) is an essential, non-renewable resource critical for crop productivity across the world. P is immobile in nature and, therefore, the identification of novel genotypes with efficient P uptake and utilization under a low P environment is extremely important. This study was designed to characterize eighty genotypes of different Lens species for shoot and root traits at two contrasting levels of P. A significant reduction in primary root length (PRL), total surface area (TSA), total root tips (TRT), root forks (RF), total dry weight (TDW), root dry weight (RDW) and shoot dry weight (SDW) in response to P deficiency was recorded. A principal component analysis revealed that the TDW, SDW and RDW were significantly correlated to P uptake and utilization efficiency in lentils. Based on total dry weight (TDW) under low P, L4727, EC718309, EC714238, PL-97, EC718348, DPL15, PL06 and EC718332 were found promising. The characterization of different Lens species revealed species-specific variations for the studied traits. Cultivated lentils exhibited higher P uptake and utilization efficiency as compared to the wild forms. The study, based on four different techniques, identified EC714238 as the most P use-efficient genotype. The genotypes identified in this study can be utilized for developing mapping populations and deciphering the genetics for breeding lentil varieties suited for low P environments.

scholarly journals Detection of QTL for phosphorus efficiency and biomass traits at the seedling stage in wheat

2020 ◽  
Vol 48 (4) ◽  
pp. 517-524
Author(s):  
Y. Yuan ◽  
M. Zhang ◽  
H. Zheng ◽  
F. Kong ◽  
Y. Guo ◽  
...  
Keyword(s):  
Recombinant Inbred Lines ◽  
Biomass Accumulation ◽  
P Uptake ◽  
Seedling Stage ◽  
Utilization Efficiency ◽  
Phosphorus Efficiency ◽  
Wheat Seedlings ◽  
Different Seasons ◽  
P Utilization ◽  
P Utilization Efficiency

AbstractPhosphorus (P) is one of the most vital nutrient elements in crop output and quality formation. In this study, four biomass, four P uptake efficiency (PupE), and three P-utilization efficiency (PutE) traits were investigated using a set of recombinant inbred lines (RILs) derived from a cross of “SN0431 × LM21”, under hydroponic culture trials at low P (LP) and normal P (NP) levels in two different seasons, respectively. A total of 85 QTL were identified on 18 chromosomes except for 1D, 2A, and 3D. Among them, 36 and 42 QTL were detected under LP and NP, respectively, and seven QTL were simultaneously detected under LP and NP. Seventeen relatively high-frequency QTL (RHF-QTL) were detected. The average contributions of 13 major RHF-QTL were over 10.00%. Five important QTL clusters were detected on chromosomes 4D, 5A, and 5B. Among them, positive linkages were observed between PutE and biomass traits at four QTL clusters, C1, C2, C3, and C6, showing these loci may be hot spots for genetic control of both phosphorus utilization and biomass accumulation in wheat seedlings. In addition, correlation analysis indicated that three biomass traits (SDW, RDW, and TDW) should be used as primary selection indexes for PE at the seedling stage.

Modelling nutrient uptake: a possible indicator of phosphorus deficiency

Soil Research ◽  
1997 ◽  
Vol 35 (2) ◽  
pp. 313 ◽  
Author(s):  
D. S. Mendham ◽  
P. J. Smethurst ◽  
P. W. Moody ◽  
R. L. Aitken
Keyword(s):  
Nutrient Uptake ◽  
Phosphorus Deficiency ◽  
Soil Phosphorus ◽  
Soil Nutrient ◽  
Growth Period ◽  
Dry Weight ◽  
Root Surface ◽  
P Uptake ◽  
P Deficiency ◽  
Highly Correlated

An understanding of the processes controlling soil nutrient supply and plant uptake has led to process-based models that can predict nutrient uptake and the concentration gradient that develops at the root surface. By using this information, it may be possible to develop an indicator of soil phosphorus status based on the predicted uptake and/or concentration of phosphorus (P) at the root surface. To identify the potential for such a test, the relationships between model output and observed plant growth were examined using data from a published experiment. The experiment was initially designed to investigate the relationship between common indices of soil-available P and the growth of maize (Zea mays) in 26 surface soils from Queensland. There was a high correlation between observed and predicted P uptake, and between relative dry matter yield and predicted P uptake. The predicted concentration of P at the root surface was also highly correlated with P uptake and dry weight increase. It is hypothesised that the short growth period (25 days) was responsible for the high correlation between P uptake and measured soil solution P. The hypothesis that a predicted concentration of P at the root surface or predicted P uptake may be valuable indicators of P deficiency in the longer term still remains to be tested.

scholarly journals Mineralization of soluble P fertilizers and insoluble rock phosphate in response to phosphate-solubilizing bacteria and poultry manure and their effect on the growth and P utilization efficiency of chilli (<i>Capsicum annuum</i> L.)

2015 ◽  
Vol 12 (15) ◽  
pp. 4607-4619 ◽  
Author(s):  
M. K. Abbasi ◽  
N. Musa ◽  
M. Manzoor
Keyword(s):  
Capsicum Annuum ◽  
Poultry Manure ◽  
Growth Yield ◽  
Utilization Efficiency ◽  
Phosphate Solubilizing Bacteria ◽  
P Utilization ◽  
P Mineralization ◽  
P Utilization Efficiency ◽  
Soluble P ◽  
P Fertilizers

Abstract. The ability of soil microorganisms and organic manure to convert insoluble phosphorus (P) to an accessible form offers a biological rescue system for improving P utilization efficiency in soil–plant systems. Our objective was to examine the P mineralization potential of two soluble P fertilizers (SPF), i.e., single superphosphate (SSP) and diammonium phosphate (DAP), and of insoluble rock phosphate (RP) with and without phosphate-solubilizing bacteria (PSB) and poultry manure (PM) and their subsequent effect on the growth, yield and P utilization efficiency (PUE) of chilli (Capsicum annuum L.). An incubation study was carried out on a loam (slightly alkaline) soil with 12 treatments: T0 – control; T1 – RP; T2 – SSP; T3 – DAP; T4 – PM; T5 – 1/2 RP+1/2 SSP; T6 – 1/2 RP+1/2 DAP; T7 – 1/2 RP+1/2 PM; T8 – RP+PSB; T9 – 1/2 RP+1/2 SSP+PSB; T10 – 1/2 RP+1/2 DAP+PSB; and T11 – 1/2 RP+1/2 PM+PSB. Phosphorus mineralization was measured by analyzing extractable P from the amended soil incubated under controlled conditions at 25 °C for periods of 0, 5, 15, 25, 35 and 60 days. A complementary greenhouse experiment was conducted in pots with chilli (Capsicum annuum L.) as a test crop. Growth, yield, P uptake and PUE of the chilli was determined during the study. Results indicated that P mineralization in soil amended with RP was 6.0–11.5 mg kg−1, while both soluble P fertilizers resulted in 68–73 mg P kg−1 at day 0, which decreased by 79–82 % at the end of incubation. The integrated use of PSB and PM with RP in T11 stimulated P mineralization by releasing a maximum of 25 mg P kg−1 that was maintained at high levels without any loss. Use of PSB decreased soil pH. In the greenhouse experiment, RP alone or RP+PSB did not have a significant impact on plant growth. However, the combined use of RP, PM and PSB in T11 resulted in similar growth, yield and P uptake of chilli as DAP. The PUE of applied P varied from 4 to 29 % and was higher in the treatments that included PSB. We conclude that the use of PSB and PM with insoluble RP or with soluble P fertilizers could be a promising approach to enhance P availability from both low-grade RP and SPF for crop production in intensive cropping systems.

scholarly journals Substrate Acidification by Geranium: Light Effects and Phosphorus Uptake

2008 ◽  
Vol 133 (4) ◽  
pp. 515-520 ◽  
Author(s):  
Matthew D. Taylor ◽  
Paul V. Nelson ◽  
Jonathan M. Frantz
Keyword(s):  
Light Intensity ◽  
Phosphorus Uptake ◽  
Dry Weight ◽  
P Uptake ◽  
High Light Intensity ◽  
High Light ◽  
P Deficiency ◽  
Light Levels ◽  
Direct Light ◽  
Substrate Ph

Sudden pH decline (SPD) describes the situation where crops growing at an appropriate pH rapidly (within 1–2 weeks) cause the substrate pH to shift downward one to two units. ‘Designer Dark Red’ geraniums (Pelargonium ×hortorum Bailey) were grown in three experiments to assess possible effects of light on SPD and phosphorous (P) uptake. The first experiment tested the effect of four light intensities (105, 210, 575, and 1020 ± 25 μmol·m−2·s−1) on substrate acidification. At 63 days, substrate pH declined from 6.0 to 4.8 as light intensity increased. Tissue P of plants grown at the highest two light levels was extremely low (0.10%–0.14% of dry weight). P stress has been reported to cause acidification. Because plants in the two lowest light treatments had adequate P, it was not possible to determine if the drop in substrate pH was a direct light effect or a combination of light and P. The second experiment used a factorial combination of the three highest light levels from Expt. 1 and five preplant P rates (0, 0.065, 0.13, 0.26, or 0.52 g·L−1 substrate) to assess this question. When tissue P concentrations were deficient, pH decreased by 0.6 to 1.0 pH units within 2 weeks and deficiency occurred more often with high light intensity. These data indicated that P deficiency caused substrate acidification and indicated the possibility that P uptake was suppressed by high light intensity. The third experiment was conducted in hydroponics to determine the direct effect of high light intensity on P uptake. In this experiment, cumulative P uptake per gram root and the rate of P uptake per gram root per day both decreased 20% when light intensity increased from 500 to 1100 μmol·m−2·s−1. It is clear from this study that P deficiency causes geraniums to acidify the substrate and that high light suppresses P uptake.

scholarly journals Genetic Dissection of Phosphorus Use Efficiency in a Maize Association Population under Two P Levels in the Field

2021 ◽  
Vol 22 (17) ◽  
pp. 9311
Author(s):  
Dongdong Li ◽  
Haoying Wang ◽  
Meng Wang ◽  
Guoliang Li ◽  
Zhe Chen ◽  
...  
Keyword(s):  
Grain Yield ◽  
Genome Wide Association Study ◽  
Crop Yields ◽  
Tolerance Index ◽  
Genetic Dissection ◽  
Phosphorus Use Efficiency ◽  
P Deficiency ◽  
A Genome ◽  
Zea May ◽  
Use Efficiency

Phosphorus (P) deficiency is an important challenge the world faces while having to increase crop yields. It is therefore necessary to select maize (Zea may L.) genotypes with high phosphorus use efficiency (PUE). Here, we extensively analyzed the biomass, grain yield, and PUE-related traits of 359 maize inbred lines grown under both low-P and normal-P conditions. A significant decrease in grain yield per plant and biomass, an increase in PUE under low-P condition, as well as significant correlations between the two treatments were observed. In a genome-wide association study, 49, 53, and 48 candidate genes were identified for eleven traits under low-P, normal-P conditions, and in low-P tolerance index (phenotype under low-P divided by phenotype under normal-P condition) datasets, respectively. Several gene ontology pathways were enriched for the genes identified under low-P condition. In addition, seven key genes related to phosphate transporter or stress response were molecularly characterized. Further analyses uncovered the favorable haplotype for several core genes, which is less prevalent in modern lines but often enriched in a specific subpopulation. Collectively, our research provides progress in the genetic dissection and molecular characterization of PUE in maize.

scholarly journals Response of Neotyphodium lolii-infected perennial ryegrass to phosphorus deficiency

2008 ◽  
Vol 53 (No. 3) ◽  
pp. 113-119 ◽  
Author(s):  
A.Z. Ren ◽  
Y.B. Gao ◽  
F. Zhou
Keyword(s):  
Organic Acids ◽  
Perennial Ryegrass ◽  
Total Phenolics ◽  
Phosphorus Deficiency ◽  
Dry Weight ◽  
P Uptake ◽  
P Deficiency ◽  
Neotyphodium Lolii ◽  
Root Shoot Ratio ◽  
Endophyte Infection

It has been demonstrated that endophyte-infected (EI) ryegrass performed better in response to N deficiency than its endophyte-free (EF) counterpart. When P is considered, there is a lack of related information. In this study, <i>Lolium perenne</i> L. infected with <i>Neotyphodium lolii</i> was employed to establish EI and EF populations. Soil-grown EI and EF ryegrass were tested for their responses to P deficiency. The results showed that the endophyte infection improved the adaptability of ryegrass to P deficiency. When P was limited, EI roots were significantly longer (EI, 398.8; EF, 323.4 m/pot) and heavier (EI, 30.58; EF, 23.20 g/pot) than EF roots; the root: shoot ratio of EI plants was greater than that of EF plants (<i>P</i> < 0.05). The content of total phenolics and organic acids was significantly greater for EI roots than for EF roots at low P supply; the concentration of both, however, was not improved by the endophyte infection. This suggested that it was the higher root dry weight (DW) that contributed to the higher content of total phenolics and organic acids for EI plants, and the endophyte infection might have negligible effects on chemical modification of perennial ryegrass. Endophyte infection did not increase P uptake rate but did significantly improve P use efficiency of ryegrass in response to P deficiency (EI, 0.734; EF, 0.622 g DW/mg P).

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