scholarly journals Fungal Endophytic Community Associated with Guarana (Paullinia cupana Var. Sorbilis): Diversity Driver by Genotypes in the Centre of Origin

2020 ◽  
Vol 6 (3) ◽  
pp. 123
Author(s):  
Carla Santos ◽  
Blenda Naara Santos da Silva ◽  
Ana Francisca Tibúrcia Amorim Ferreira e Ferreira ◽  
Cledir Santos ◽  
Nelson Lima ◽  
...  
Keyword(s):  
Endophytic Fungi ◽  
Fungal Diversity ◽  
Geographic Location ◽  
Potato Dextrose Agar ◽  
Fungal Communities ◽  
Paullinia Cupana ◽  
Centre Of Origin ◽  
Domestication Process ◽  
Amazonas State ◽  
Latent Pathogens

Guarana plant is a native of the Amazon region. Due to its high amount of caffeine and tannins, the seed has medicinal and stimulating properties. The guarana industry has grown exponentially in recent years; however, little information is available about associated mycobiota, particularly endophytic fungi. The present study aimed to compare the distribution and diversity of endophytic fungi associated with the leaves and seeds of anthracnose-resistant and susceptible guarana plants produced in Maués and Manaus, Amazonas State, Brazil. A total of 7514 endophytic fungi were isolated on Potato Dextrose Agar, Sabouraud and Czapek media, and grouped into 77 morphological groups. Overall, fungal communities in guarana leaves and seeds were mainly composed by Colletotrichum and Fusarium genera, but also by Chondrostereum, Clonostachys, Curvularia, Hypomontagnella, Lentinus, Neopestalotiopsis, Nigrospora, Peroneutypa, Phyllosticta, Simplicillium and Tinctoporellus. Obtained results indicate that some members of Colletotrichum and Fusarium genera may have experienced dysbiosis during the guarana domestication process, suggesting that some individuals may behave as latent pathogens. The susceptible guarana genotype cultivated in Manaus presented higher fungal diversity. The relative abundance of taxa and diversity among samples suggests that communities are structured by genotype and geographic location. This is the first report of mycobiota in both guarana leaves and seeds.

scholarly journals Are Wildfires a Threat to Fungi in European Pinus Forests? A Case Study of Boreal and Mediterranean Forests

Forests ◽  
2019 ◽  
Vol 10 (4) ◽  
pp. 309 ◽  
Author(s):  
Iván Franco-Manchón ◽  
Kauko Salo ◽  
Juan Oria-de-Rueda ◽  
José Bonet ◽  
Pablo Martín-Pinto
Keyword(s):  
Boreal Forests ◽  
Fungal Diversity ◽  
Community Dynamics ◽  
Forest Products ◽  
Climatic Conditions ◽  
Fungal Communities ◽  
Mediterranean Forests ◽  
Natural Forests ◽  
Edible Fungi ◽  
Pinus Species

Natural forests and plantations of Pinus are ecologically and economically important worldwide, producing an array of goods and services, including the provision of non-wood forest products. Pinus species play an important role in Mediterranean and boreal forests. Although Pinus species seem to show an ecological adaptation to recurrent wildfires, a new era of mega fires is predicted, owing to climate changes associated with global warming. As a consequence, fungal communities, which are key players in forest ecosystems, could be strongly affected by these wildfires. The aim of this study was to observe the fungal community dynamics, and particularly the edible fungi, in maritime (Pinus pinaster Ait.), austrian pine (Pinus nigra J.F. Arnold), and scots pine (Pinus sylvestris L.) forests growing under wet Mediterranean, dry Mediterranean, and boreal climatic conditions, respectively, by comparing the mushrooms produced in severely burned Pinus forests in each area. Sporocarps were collected during the main sampling campaigns in non-burned plots, and in burned plots one year and five years after fire. A total of 182 taxa, belonging to 81 genera, were collected from the sampled plots, indicating a high level of fungal diversity in these pine forests, independent of the climatic conditions. The composition of the fungal communities was strongly affected by wildfire. Mycorrhizal taxa were impacted more severely by wildfire than the saprotrophic taxa, particularly in boreal forests—no mycorrhizal taxa were observed in the year following fire in boreal forests. Based on our observations, it seems that fungal communities of boreal P. sylvestris forests are not as adapted to high-intensity fires as the Mediterranean fungal communities of P. nigra and P. pinaster forests. This will have an impact on reducing fungal diversity and potential incomes in rural economically depressed areas that depend on income from foraged edible fungi, one of the most important non-wood forest products.

scholarly journals Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity

2017 ◽  
Vol 83 (17) ◽  
Author(s):  
Francesca De Filippis ◽  
Manolo Laiola ◽  
Giuseppe Blaiotta ◽  
Danilo Ercolini
Keyword(s):  
Microbial Ecology ◽  
High Throughput ◽  
Biological Samples ◽  
Fungal Diversity ◽  
High Throughput Sequencing ◽  
Amplicon Sequencing ◽  
Fungal Species ◽  
Fungal Communities ◽  
Its2 Region ◽  
Mock Community

ABSTRACT Target-gene amplicon sequencing is the most exploited high-throughput sequencing application in microbial ecology. The targets are taxonomically relevant genes, with 16S rRNA being the gold standard for bacteria. As for fungi, the most commonly used target is the internal transcribed spacer (ITS). However, the uneven ITS length among species may promote preferential amplification and sequencing and incorrect estimation of their abundance. Therefore, the use of different targets is desirable. We evaluated the use of three different target amplicons for the characterization of fungal diversity. After an in silico primer evaluation, we compared three amplicons (the ITS1-ITS2 region [ITS1-2], 18S ribosomal small subunit RNA, and the D1/D2 domain of the 26S ribosomal large subunit RNA), using biological samples and a mock community of common fungal species. All three targets allowed for accurate identification of the species present. Nevertheless, high heterogeneity in ITS1-2 length was found, and this caused an overestimation of the abundance of species with a shorter ITS, while both 18S and 26S amplicons allowed for more reliable quantification. We demonstrated that ITS1-2 amplicon sequencing, although widely used, may lead to an incorrect evaluation of fungal communities, and efforts should be made to promote the use of different targets in sequencing-based microbial ecology studies. IMPORTANCE Amplicon-sequencing approaches for fungi may rely on different targets affecting the diversity and abundance of the fungal species. An increasing number of studies will address fungal diversity by high-throughput amplicon sequencing. The description of the communities must be accurate and reliable in order to draw useful insights and to address both ecological and biological questions. By analyzing a mock community and several biological samples, we demonstrate that using different amplicon targets may change the results of fungal microbiota analysis, and we highlight how a careful choice of the target is fundamental for a thorough description of the fungal communities.

scholarly journals Fungal diversity in high Andean ecuadorian forest soil

2021 ◽  
Author(s):  
Adrian Valdez ◽  
Sergio Covarrubias
Keyword(s):  
Fungal Diversity ◽  
High Performance ◽  
Its Region ◽  
Taxonomic Composition ◽  
Soil Samples ◽  
Fungal Communities ◽  
Gallery Forest ◽  
Volcanic Soils ◽  
Altitudinal Gradients ◽  
The Andes

The Andes range in Ecuador presents high biodiversity and characteristic altitudinal gradients, which are frequently threatened by deforestation and farming. In particular, forest have developed in the high inter-Andean alley on volcanic soils forming a unique ecoregion. Little is known on the fungal biodiversity of soil in such high Andean gallery forest submitted to strong degradation pressures. Therefore, in this study we evaluated wether the soil mycobiome was associated with altitudinal gradients during the dry season. Three representative locations were selected based on altitude: A (3,309 meters above the sea level, masl), B (3,809 masl) and C (4,409 masl). High performance sequencing (NGS) of the ITS region of ribosomal DNA genes with Illumina technology was used to explore the fungal taxonomic composition in the soil samples. Our results showed changes in the structure of fungal communities in the different locations, related to the relative abundance of Amplicon Sequence Variants (ASV). Higher fungal diversity was related with the altitudinal gradient with average taxa ranging from 675, 626 and 556 ASVs, respectively from location A to C. The results highlight the complexity and diversity of fungal communities in high Andean forest and the need to protect these unique mycobiomes. The findings in this ecosystem of Ecuador will improve our understanding of distribution, diversity, ecology, and biological perspectives for the restoration of terrestrial microbiomes.

scholarly journals Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago

2015 ◽  
Vol 11 (9) ◽  
pp. 20150408 ◽  
Author(s):  
Johan Pansu ◽  
Richard C. Winkworth ◽  
Françoise Hennion ◽  
Ludovic Gielly ◽  
Pierre Taberlet ◽  
...  
Keyword(s):  
Plant Communities ◽  
Fungal Diversity ◽  
Extracellular Dna ◽  
Fungal Communities ◽  
Late Nineteenth Century ◽  
Mammalian Herbivores ◽  
Introduced Herbivores ◽  
Compositional Changes ◽  
Late Nineteenth ◽  
Soil Fungal Diversity

During the late nineteenth century, Europeans introduced rabbits to many of the sub-Antarctic islands, environments that prior to this had been devoid of mammalian herbivores. The impacts of rabbits on indigenous ecosystems are well studied; notably, they cause dramatic changes in plant communities and promote soil erosion. However, the responses of fungal communities to such biotic disturbances remain unexplored. We used metabarcoding of soil extracellular DNA to assess the diversity of plant and fungal communities at sites on the sub-Antarctic Kerguelen Islands with contrasting histories of disturbance by rabbits. Our results suggest that on these islands, the simplification of plant communities and increased erosion resulting from the introduction of rabbits have driven compositional changes, including diversity reductions, in indigenous soil fungal communities. Moreover, there is no indication of recovery at sites from which rabbits were removed 20 years ago. These results imply that introduced herbivores have long-lasting and multifaceted effects on fungal biodiversity as well as highlight the low resiliency of sub-Antarctic ecosystems.

scholarly journals Diversity and Structure of Soil Fungal Communities across Experimental Everglades Tree Islands

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 324
Author(s):  
Brianna K. Almeida ◽  
Michael S. Ross ◽  
Susana L. Stoffella ◽  
Jay P. Sah ◽  
Eric Cline ◽  
...  
Keyword(s):  
Water Level ◽  
Fungal Community ◽  
Plant Pathogen ◽  
Fungal Diversity ◽  
Fungal Communities ◽  
Tree Islands ◽  
Fungal Community Composition ◽  
Everglades Tree Islands ◽  
And Function ◽  
Early Restoration

Fungi play prominent roles in ecosystem services (e.g., nutrient cycling, decomposition) and thus have increasingly garnered attention in restoration ecology. However, it is unclear how most management decisions impact fungal communities, making it difficult to protect fungal diversity and utilize fungi to improve restoration success. To understand the effects of restoration decisions and environmental variation on fungal communities, we sequenced soil fungal microbiomes from 96 sites across eight experimental Everglades tree islands approximately 15 years after restoration occurred. We found that early restoration decisions can have enduring consequences for fungal communities. Factors experimentally manipulated in 2003–2007 (e.g., type of island core) had significant legacy effects on fungal community composition. Our results also emphasized the role of water regime in fungal diversity, composition, and function. As the relative water level decreased, so did fungal diversity, with an approximately 25% decline in the driest sites. Further, as the water level decreased, the abundance of the plant pathogen–saprotroph guild increased, suggesting that low water may increase plant-pathogen interactions. Our results indicate that early restoration decisions can have long-term consequences for fungal community composition and function and suggest that a drier future in the Everglades could reduce fungal diversity on imperiled tree islands.

scholarly journals Fungal Community Analysis and Biodeterioration of Waterlogged Wooden Lacquerware from the Nanhai No. 1 Shipwreck

2020 ◽  
Vol 10 (11) ◽  
pp. 3797
Author(s):  
Yin Jia ◽  
Liuyu Yin ◽  
Fengyu Zhang ◽  
Mei Wang ◽  
Mingliang Sun ◽  
...  
Keyword(s):  
Fusarium Solani ◽  
High Throughput Sequencing ◽  
Environmental Parameters ◽  
Community Analysis ◽  
Fungal Species ◽  
Potato Dextrose Agar ◽  
Fungal Communities ◽  
Cellulolytic Enzymes ◽  
Biocidal Products

To avoid the lacquerware of the Nanhai No. 1 shipwreck from being corroded by microorganisms and to improve the knowledge on microbial ecology of the wood lacquers, we conducted a series of tests on the two water samples storing the lacquerware and colonies on the surface of the lacquerware. The high-throughput sequencing detected dominant fungal communities. After that, the fungal strains were isolated and then identified by amplification of ITS- 18S rRNA. Then the activity of ligninolytic and cellulolytic enzymes was detected on potato dextrose agar (PDA) plates with 0.04% (v/v) guaiacol and carboxymethyl cellulose (CMC) agar plates. Finally, we tested the biocide susceptibility of these fungi. Penicillium chrysogenum (NK-NH3) and Fusarium solani (NK- NH1) were the dominant fungi in the sample collected in April 2016 and June 2017. What is more, both showed activity of ligninolytic and cellulolytic enzymes. Four biocidal products (Preventol® D7, P91, BIT 20N, and Euxyl® K100) inhibited the growth of the fungal species in vitro effectively. In further research, the microbial community and environmental parameters in the museum should be monitored to assess the changes in the community and to detect potential microbial outbreaks.

scholarly journals Endophytic fungi and latent pathogens in the sedge Carex secalina (Cyperaceae), a critically endangered species in Europe

2019 ◽  
Vol 55 (No. 2) ◽  
pp. 102-108 ◽  
Author(s):  
Górzyńska Karolina ◽  
Węgrzyn Ewa ◽  
Sandecki Rafał ◽  
Lembicz Marlena
Keyword(s):  
Endangered Species ◽  
Population Size ◽  
Endophytic Fungi ◽  
Critically Endangered ◽  
Critically Endangered Species ◽  
Colletotrichum Destructivum ◽  
Leaf Tissues ◽  
Study Sites ◽  
Roadside Area ◽  
Latent Pathogens

Endophytic fungi are widespread in plants and affect the host fitness and population size. We found 12 fungal taxa in C. secalina, a critically endangered species in several European countries, at two study sites in Poland. The most frequently occurring fungal taxa were Colletotrichum destructivum and Acremonium sp. Both taxa were found in half of the examined tussocks. The highest number of fungal taxa was noted in the C. secalina plants growing in the roadside area, where 7 of the 12 identified fungal taxa occurred. These fungi, inhabiting leaf tissues, are known for their pathogenicity but no visible symptoms of any diseases were observed on C. secalina leaves. This suggests that these fungi are latent pathogens.

scholarly journals Effect of Vineyard Floor Management on Seasonal Changes of Cultivable Fungal Diversity in the Rhizosphere

Agriculture ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 534
Author(s):  
Barnabás Kovács ◽  
Csaba Dobolyi ◽  
Flóra Sebők ◽  
László Kocsis ◽  
Zoltán Tóth
Keyword(s):  
Fungal Diversity ◽  
Plant Protection ◽  
Fungal Communities ◽  
Soil Tillage ◽  
Fungal Colonization ◽  
Lower Intensity ◽  
Fungal Community Structure ◽  
Vineyard Floor Management ◽  
Lower Ratio ◽  
Tillage Methods

Vineyard floor management has been widely discussed for many decades, but it is still unclear how its intensity levels change the fungal community structure of grape rhizosphere. Our objective was to examine the density and rate of the habitats of fungi in three vineyards that differ only in the methods of tillage procedure applied, namely intensive, extensive and none (abandoned). The hypothesis was that in the cases of lower intensity or no soil tillage, there would be a higher level of fungal diversity with a lower ratio of pathogen strains in grape rhizosphere. In the course of this research, it has been determined that the level of fungal colonization of roots is the highest in the extensively managed vineyard, unrelated to season (spring and summer). Four of the five fungal genera detectable in all of the three sampled vineyards are registered as opportunist grape pathogens, however the fifth one, Trichoderma, is commonly used in biological plant protection. The diversity of fungal communities in grape rhizosphere, in accordance with the expectations, was the lowest in the intensively cultivated and highest in the abandoned vineyard, and it was not affected by seasons. The proportion of opportunist plant pathogen groups was higher in the intensive variant than in the other two (less-intensive variants); therefore, it is possible to conclude that soil under similar conditions but disturbed by intensive tillage methods tends to exhibit lower suppressivity.

scholarly journals Mangrove-Associated Fungal Communities Are Differentiated by Geographic Location and Host Structure

2019 ◽  
Vol 10 ◽  
Author(s):  
Nicole Li Ying Lee ◽  
Danwei Huang ◽  
Zheng Bin Randolph Quek ◽  
Jen Nie Lee ◽  
Benjamin J. Wainwright
Keyword(s):  
Geographic Location ◽  
Fungal Communities ◽  
Host Structure
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