scholarly journals Plausible Emergence of Autocatalytic Cycles under Prebiotic Conditions

Life ◽  
2019 ◽  
Vol 9 (2) ◽  
pp. 33 ◽  
Author(s):  
Stefano Piotto ◽  
Lucia Sessa ◽  
Andrea Piotto ◽  
Anna Nardiello ◽  
Simona Concilio

The emergence of life in a prebiotic world is an enormous scientific question of paramount philosophical importance. Even when life (in any sense we can define it) can be observed and replicated in the laboratory, it is only an indication of one possible pathway for life emergence, and is by no means be a demonstration of how life really emerged. The best we can hope for is to indicate plausible chemical–physical conditions and mechanisms that might lead to self-organizing and autopoietic systems. Here we present a stochastic simulation, based on chemical reactions already observed in prebiotic environments, that might help in the design of new experiments. We will show how the definition of simple rules for the synthesis of random peptides may lead to the appearance of networks of autocatalytic cycles and the emergence of memory.

Author(s):  
Matteo D'Antoni ◽  
David Geisler-Moroder ◽  
Paolo Bonato ◽  
Fabian Ernst Ochs ◽  
Mara Magni ◽  
...  

2019 ◽  
Vol 28 (1) ◽  
pp. 3-13 ◽  
Author(s):  
Mario Villalobos ◽  
Pablo Razeto-Barry

Building on the original formulation of the autopoietic theory (AT), extended enactivism argues that living beings are autopoietic systems that extend beyond the spatial boundaries of the organism. In this article, we argue that extended enactivism, despite having some basis in AT’s original formulation, mistakes AT’s definition of living beings as autopoietic entities. We offer, as a reply to this interpretation, a more embodied reformulation of autopoiesis, which we think is necessary to counterbalance the (excessively) disembodied spirit of AT’s original formulation. The article aims to clarify and correct what we take to be a misinterpretation of AT as a research program. AT, contrary to what some enactivists seem to believe, did not (and does not) intend to motivate an extended conception of living beings. AT’s primary purpose, we argue, was (and is) to provide a universal individuation criterion for living beings, these understood as discrete bodies that are embedded in, but not constituted by, the environment that surrounds them. However, by giving a more explicitly embodied definition of living beings, AT can rectify and accommodate, so we argue, the enactive extended interpretation of autopoiesis, showing that although living beings do not extend beyond their boundaries as autopoietic unities, they do form part, in normal conditions, of broader autopoietic systems that include the environment.


Author(s):  
LaVera Crawley ◽  
Jonathan Koffman

This chapter attempts to identify ‘differences that make a difference’ when individuals and groups negotiate institutions and practices for palliative and end-of-life care. Two influences on the practice of palliative care-immigration and health disparities-are examined. The World Health Organization definition of palliative care specifies two goals: improving quality of life of patients and families and preventing and relieving suffering. It identifies three ‘colour blind’ strategies for meeting those goals: early identification, impeccable assessment, and (appropriate) treatment. Lastly, the definition addresses four domains of care: (1) problems related to pain, (2) physical conditions, (3) the psychosocial, (4) and the spiritual. This chapter specifically addresses these goals, strategies, and domains in relation to delivering quality palliative care in cross- or multicultural settings.


Materials ◽  
2019 ◽  
Vol 12 (7) ◽  
pp. 1134 ◽  
Author(s):  
Mario Monzón ◽  
Rubén Paz ◽  
Martí Verdaguer ◽  
Luis Suárez ◽  
Pere Badalló ◽  
...  

The use of natural fibres allows reducing environmental impact, due to their natural renewable origin and the lower energy needed for their production and processing. This work presents the mechanical characterization of a newly developed technical textile, with banana fibre treated by enzymes, comparing experimental results with numerical simulation based on the definition of the unit cell at micromechanical level. The experimental test shows that the composite with the fabric of banana fibre presents worse mechanical behaviour than the one with commercial flax fibre. The presence of wool, necessary for producing the yarn, reduces the mechanical properties of the banana textile. The numerical simulation had an acceptable error compared with the experimental results, with a global average error of 9%, showing that the predictive modelling based on the multiscale method is suitable for the design process of this kind of composite.


Author(s):  
Jan Fábry

The presence of degenerate chemical reactions in crystals is discussed. They take place in some order–disorder phase transitions in crystals. The other category of identity (degenerate) chemical reactions in crystals includes a few examples of domain reorientations with simultaneous hopping of atoms/ions in some ferroelastic crystals. The product of the hopping maybe either identical with the reactant though in a different orientation or a conjugated enantiomorph. In these examples, the hopping atom is either situated in a special position or disordered about it in the paraelastic phase. The article also discusses the definition of identity (degenerate) chemical reactions which do not take into cosideration the reactions in which the reactant and the product are enantiomers or enantiomorphs.


2011 ◽  
Vol 17 (3) ◽  
pp. 219-236 ◽  
Author(s):  
Raphaël Plasson ◽  
Axel Brandenburg ◽  
Ludovic Jullien ◽  
Hugues Bersini

Autocatalysis is a fundamental concept, used in a wide range of domains. From its most general definition, that is, a process in which a chemical compound is able to catalyze its own formation, several different systems can be described. We detail the different categories of autocatalyses, and compare them on the basis of their mechanistic, kinetic, and dynamic properties. It is shown how autocatalytic patterns can be generated by different systems of chemical reactions. The notion of autocatalysis covers a large variety of mechanistic realizations with very similar behaviors; it is proposed that its key signature is its kinetic pattern expressed in a mathematical form. This notion, while describing dynamic behaviors at the most fundamental level, is at the basis for developing higher-level concepts towards life: autocatalytic sets, and autopoietic systems.


VLSI Design ◽  
1999 ◽  
Vol 9 (2) ◽  
pp. 181-201 ◽  
Author(s):  
Phillip Baraona ◽  
Perry Alexander

Complex digital systems are often decomposed into architectures very early in the design process. Unfortunately, traditional simulation based languages such as VHDL do not allow the impact of these architectural decisions to be evaluated until a complete, simulatable design of the system is available. After a complete design is available, architectural errors are time-consuming and expensive to correct. However, there is an alternative to simulation based techniques: formal analysis of abstract architectures at the requirements level. This paper describes VSBEC'S approach for defining and analyzing abstract architectures. VSBEC is a Larch interface language for VHDL that allows a designer to specify the requirements of a VHDL entity using the canonical Larch approach. VHDL structural architectures that instantiate VSPEC entities define abstract architectures. These abstract architectures can be evaluated at the requirements level to determine the impact of architectural decisions. This paper briefly introduces VSPEC provides a formal definition of VSPEC abstract architectures and presents two examples that illustrate the architectural definition capabilities of the language.


Blood ◽  
2018 ◽  
Vol 132 (Supplement 1) ◽  
pp. 5196-5196 ◽  
Author(s):  
Bourras-Rezki Bengoudifa ◽  
Hans Weber ◽  
Insa Gathmann ◽  
Albert Hoenekopp ◽  
Noah Berkowitz

Abstract In the ongoing randomized, placebo-controlled, phase 3 study in patients with newly diagnosed FLT3-mutation-negative acute myeloid leukemia (AML; NCT03512197) investigating the effect of adding midostaurin to standard chemotherapy, event-free survival (EFS) is the primary endpoint. EFS is a standard endpoint in clinical studies in AML. In a recent FDA submission, EFS was confirmed by an advisory committee to be clinically meaningful in AML (https://www.fda.gov/downloads/AdvisoryCommittees/CommitteesMeetingMaterials/Drugs/OncologicDrugsAdvisoryCommittee/UCM570800.pdf. Accessed August 1, 2018). With the release of the International Conference on Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH) E9 draft addendum, we describe EFS in the estimand framework to address the scientific question of interest and illustrate the power of this concept to transparently define the relevant population, the variable of interest, and the management of relevant incidents that can occur in a clinical trial ("intercurrent events"). The objective is to determine the benefit of adding midostaurin to the whole standard chemotherapy sequence, consisting of induction, consolidation therapy, hematopoietic stem cell transplant (HSCT; if applicable), and postconsolidation therapy, in patients with newly diagnosed AML without a FLT3 mutation. The main interest is the interventional effect of the whole treatment sequence and not the contribution of an individual part of it. The study population includes all randomized patients following the treatment policy approach. Patients can be randomized only if there is confirmation from the central laboratory that there is no FLT3 mutation. EFS is a composite endpoint defined as the time from randomization until death, relapse, or induction failure. Induction failure is defined as no achievement of remission until end of the induction period. The definition of induction failure also includes instances in which HSCT is conducted as salvage therapy in nonresponding patients. Per convention, the EFS event date of induction failure is set to the randomization date. The option to receive HSCT can be an outcome of the treatment. Therefore, clinical benefit is assessed regardless of whether patients received HSCT. This treatment policy approach mandates collection of disease assessments after HSCT has been completed. In the same consideration, the option to receive consolidation and postconsolidation treatment is also an outcome of the induction treatment as only patients achieving remission with induction qualify to continue with consolidation and postconsolidation treatment. As such, the benefit is assessed regardless of treatment duration. The analysis plan defines a supportive estimand to assess the treatment effect of midostaurin, excluding potential benefit from HSCT. Another supportive estimand assesses the effect of discontinuation of induction treatment due to toxicities. This approach addresses a hypothetical scenario in which patients did not receive HSCT, for instance, to estimate the midostaurin-only effect. However, the outcome of the treatment is not limited to the direct effect of an experimental compound but also includes which new treatment option the compound allows for the patients (eg, HSCT). The estimand framework is an efficient tool to ensure consistency between the scientific question and the definition of the study objectives. It ensures transparency in unfavorable yet unavoidable situations in clinical trials ("intercurrent events"). It facilitates communication within the clinical team and with health authorities. The outcome of studies that are following the estimand framework can be interpreted in a consistent manner. Disclosures Bengoudifa: Novartis: Employment. Weber:Novartis: Employment. Gathmann:Novartis: Employment. Hoenekopp:Novartis: Employment. Berkowitz:Novartis: Employment.


Author(s):  
Naiara Francisca Ramos ◽  
Armando Borges Castilhos Jr. ◽  
Fernando Antonio Forcellini ◽  
Odacir Dionísio Graciolli

This study presents information collected from waste pickers in the southern, south-eastern and north-eastern regions of Brazil to guide the development of a collection vehicle and a support system for the definition of collecting routes. The study had three objectives: to specify the profile of waste pickers of recyclable materials in the three surveyed regions; to diagnose the working conditions of individuals linked to associations and cooperatives of waste pickers and to identify the physical and operational structure of the waste picker organizations. To reach these objectives questionnaires were issued to waste pickers linked to associations and cooperatives that collect recyclables using human- or animal-powered vehicles and to the waste picker organizations themselves. Based on the results of this study, we are able to provide the requirements for the development of the collection vehicle, to draw a profile of the waste pickers in the three study regions and have better understanding of the working and physical conditions and the organizational structure of waste picker entities. It can be concluded that waste pickers suffer several forms of deprivation, resulting in the marginalization, prejudice and exclusion of individuals who conduct this work, making it essential to promote actions that contribute to the social inclusion of waste pickers in their productive segment.


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