Faculty Opinions recommendation of WRKY70 modulates the selection of signaling pathways in plant defense.

2006 ◽  
Author(s):  
Keith Davis
Keyword(s):  
Plant Defense ◽  
Signaling Pathways ◽  
Selection Of

scholarly journals WRKY70 modulates the selection of signaling pathways in plant defense

2006 ◽  
Vol 46 (3) ◽  
pp. 477-491 ◽  
Author(s):  
Jing Li ◽  
Günter Brader ◽  
Tarja Kariola ◽  
E. Tapio Palva
Keyword(s):  
Plant Defense ◽  
Signaling Pathways ◽  
Selection Of

Vesicle Trafficking, Autophagy and Nanoparticles: A Brief Review

2020 ◽  
Vol 10 (1) ◽  
pp. 3-19
Author(s):  
Tianzhong Li ◽  
Mengsu Yang
Keyword(s):  
Clinical Trials ◽  
Signaling Pathways ◽  
Cellular Uptake ◽  
Vesicle Trafficking ◽  
Endocytic Pathway ◽  
Proton Sponge ◽  
Intracellular Release ◽  
Molecular Machinery ◽  
Delivery Vehicles ◽  
Selection Of

Background: Nanomedicine shows a huge promise for incurable diseases. So far, more than 50 nanoparticles have been approved by FDA and around 80 nanoformulations are currently in clinical trials. Nanoparticles possess several advantages over traditional drugs, including higher biocompatibility and bioavailability. One of the challenges for their wide application is insufficient understanding of the molecular network related to internalization of particles and intracellular release of cargos. Objective: This article aims to review the interactions between nanoparticles, vesicle transportation and autophagy pathways. The underlying molecular machinery is also discussed. Methods: For each step of the vesicle trafficking and autophagy, details of signaling pathways are described for a better understanding of the interactions between delivery vehicles and biomolecules within the cell. Conclusion: The selection of cellular uptake route mainly depends on physical characteristics of nanoparticles. For nanoparticles modified with ligands, they undergo receptormediated endocytic pathway. Once residing within the cells, cargos are released after disruption of endosomes, a mechanism called ‘proton sponge effect’. Besides, internalized nanoparticles either can be exocytosized, or they initiate the autophagy response, affecting the intracellular distribution of drugs.

scholarly journals Regulating the Regulators: The Control of Transcription Factors in Plant Defense Signaling

2018 ◽  
Vol 19 (12) ◽  
pp. 3737 ◽  
Author(s):  
Danny Ng ◽  
Jayami Abeysinghe ◽  
Maedeh Kamali
Keyword(s):  
Transcription Factors ◽  
Plant Defense ◽  
Signaling Pathways ◽  
Stress Responses ◽  
Crop Production ◽  
Defense Responses ◽  
Sequencing Data ◽  
Basic Leucine Zipper ◽  
Master Regulators ◽  
External Threats

Being sessile, plants rely on intricate signaling pathways to mount an efficient defense against external threats while maintaining the cost balance for growth. Transcription factors (TFs) form a repertoire of master regulators in controlling various processes of plant development and responses against external stimuli. There are about 58 families of TFs in plants and among them, six major TF families (AP2/ERF (APETALA2/ethylene responsive factor), bHLH (basic helix-loop-helix), MYB (myeloblastosis related), NAC (no apical meristem (NAM), Arabidopsis transcription activation factor (ATAF1/2), and cup-shaped cotyledon (CUC2)), WRKY, and bZIP (basic leucine zipper)) are found to be involved in biotic and abiotic stress responses. As master regulators of plant defense, the expression and activities of these TFs are subjected to various transcriptional and post-transcriptional controls, as well as post-translational modifications. Many excellent reviews have discussed the importance of these TFs families in mediating their downstream target signaling pathways in plant defense. In this review, we summarize the molecular regulatory mechanisms determining the expression and activities of these master regulators themselves, providing insights for studying their variation and regulation in crop wild relatives (CWR). With the advance of genome sequencing and the growing collection of re-sequencing data of CWR, now is the time to re-examine and discover CWR for the lost or alternative alleles of TFs. Such approach will facilitate molecular breeding and genetic improvement of domesticated crops, especially in stress tolerance and defense responses, with the aim to address the growing concern of climate change and its impact on agriculture crop production.

Vanadium and bone development: putative signaling pathwaysThis paper is one of a selection of papers published in this Special issue, entitled Second Messengers and Phosphoproteins—12th International Conference.

2006 ◽  
Vol 84 (7) ◽  
pp. 677-686 ◽  
Author(s):  
D.A. Barrio ◽  
S.B. Etcheverry
Keyword(s):  
Growth Factors ◽  
Signaling Pathways ◽  
Intracellular Signaling ◽  
Bone Development ◽  
Second Messengers ◽  
Vanadium Compounds ◽  
Intracellular Signaling Pathways ◽  
Osteoblast Cell Line ◽  
Secondary Side ◽  
Selection Of

Vanadium is a trace element present in practically all cells in plants and animals. It exerts interesting actions in living systems. At pharmacological doses, vanadium compounds display relevant biological actions such as mimicking insulin and growth factors as well as having osteogenic activity. Some vanadium compounds also show antitumoral properties. The importance of vanadium in bone arises from the studies developed to establish the essentiality of this element in animals and humans. Bone tissue, where the element seems to play an important role, accumulates great amounts of vanadium. This paper reviews the physiology of osteoblasts, the involvement of different growth factors on bone development, and the effects of vanadium derivatives on the skeletal system of animal models and bone-related cells. Two cellular lines are discussed in particular; one derived from a rat osteosarcoma (UMR106) and the other is a nontransformed osteoblast cell line (MC3T3-E1). The effects of different growth factors and their mechanisms of action in these cellular lines are reviewed. These models of osteoblasts are especially useful in understanding the intracellular signaling pathways of vanadium derivatives in hard tissues. Vanadium uses an intricate interplay of intracellular mechanisms to exert different biochemical and pharmacological actions. The effects of vanadium derivatives on some cellular signaling pathways related to insulin are compiled in this review. The comprehension of these intracellular signaling pathways may facilitate the design of vanadium compounds with promising therapeutic applications as well as the understanding of secondary side effects derived from the use of vanadium as a therapeutic agent.

A functional genomics approach reveals novel quantitative trait loci associated with platelet signaling pathways

Blood ◽  
2009 ◽  
Vol 114 (7) ◽  
pp. 1405-1416 ◽  
Author(s):  
Chris I. Jones ◽  
Sarah Bray ◽  
Stephen F. Garner ◽  
Jonathan Stephens ◽  
Bernard de Bono ◽  
...  
Keyword(s):  
Protein Expression ◽  
Signaling Pathways ◽  
Adenosine Diphosphate ◽  
Minor Allele ◽  
Nucleotide Polymorphisms ◽  
Platelet Response ◽  
Single Nucleotide ◽  
Northern European ◽  
Platelet Signaling ◽  
Selection Of

AbstractPlatelet response to activation varies widely between individuals but shows interindividual consistency and strong heritability. The genetic basis of this variation has not been properly explored. We therefore systematically measured the effect on function of sequence variation in 97 candidate genes in the collagen and adenosine-diphosphate (ADP) signaling pathways. Resequencing of the genes in 48 European DNA samples nearly doubled the number of known single nucleotide polymorphisms (SNPs) and informed the selection of 1327 SNPs for genotyping in 500 healthy Northern European subjects with known platelet responses to collagen-related peptide (CRP-XL) and ADP. This identified 17 novel associations with platelet function (P < .005) accounting for approximately 46% of the variation in response. Further investigations with platelets of known genotype explored the mechanisms behind some of the associations. SNPs in PEAR1 associated with increased platelet response to CRP-XL and increased PEAR1 protein expression after platelet degranulation. The minor allele of a 3′ untranslated region (UTR) SNP (rs2769668) in VAV3 was associated with higher protein expression (P = .03) and increased P-selectin exposure after ADP activation (P = .004). Furthermore the minor allele of the intronic SNP rs17786144 in ITPR1 modified Ca2+ levels after activation with ADP (P < .004). These data provide novel insights into key hubs within platelet signaling networks.

scholarly journals Validamycin A Induces Broad-Spectrum Resistance Involving Salicylic Acid and Jasmonic Acid/Ethylene Signaling Pathways

2020 ◽  
Vol 33 (12) ◽  
pp. 1424-1437
Author(s):  
Chuanhong Bian ◽  
Yabing Duan ◽  
Jueyu Wang ◽  
Qian Xiu ◽  
Jianxin Wang ◽  
...  
Keyword(s):  
Salicylic Acid ◽  
Jasmonic Acid ◽  
Plant Defense ◽  
Signaling Pathways ◽  
Broad Spectrum ◽  
Defense Responses ◽  
Systemic Resistance ◽  
Signal Pathways ◽  
Plant Defense Responses ◽  
Validamycin A

Validamycin A (VMA) is an aminoglycoside antibiotic used to control rice sheath blight. Although it has been reported that VMA can induce the plant defense responses, the mechanism remains poorly understood. Here, we found that reactive oxygen species (ROS) bursts and callose deposition in Arabidopsis thaliana, rice (Oryza sativa L.), and wheat (Triticum aestivum L.) were induced by VMA and were most intense with 10 μg of VMA per milliliter at 24 h. Moreover, we showed that VMA induced resistance against Pseudomonas syringae, Botrytis cinerea, and Fusarium graminearum in Arabidopsis leaves, indicating that VMA induces broad-spectrum disease resistance in both dicots and monocots. In addition, VMA-mediated resistance against P. syringae was not induced in NahG transgenic plants, was partially decreased in npr1 mutants, and VMA-mediated resistance to B. cinerea was not induced in npr1, jar1, and ein2 mutants. These results strongly indicated that VMA triggers plant defense responses to both biotrophic and necrotrophic pathogens involved in salicylic acid (SA) and jasmonic acid/ethylene (JA/ET) signaling pathways and is dependent on NPR1. In addition, transcriptome analysis further revealed that VMA regulated the expression of genes involved in SA, JA/ET, abscisic acid (ABA), and auxin signal pathways. Taken together, VMA induces systemic resistance involving in SA and JA/ET signaling pathways and also exerts a positive influence on ABA and auxin signaling pathways. Our study highlights the creative application of VMA in triggering plant defense responses against plant pathogens, providing a valuable insight into applying VMA to enhance plant resistance and reduce the use of chemical pesticides. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

scholarly journals Oncobox Bioinformatical Platform for Selecting Potentially Effective Combinations of Target Cancer Drugs Using High-Throughput Gene Expression Data

Cancers ◽  
2018 ◽  
Vol 10 (10) ◽  
pp. 365 ◽  
Author(s):  
Maxim Sorokin ◽  
Roman Kholodenko ◽  
Maria Suntsova ◽  
Galina Malakhova ◽  
Andrew Garazha ◽  
...  
Keyword(s):  
Gene Expression ◽  
Signaling Pathways ◽  
Cell Lines ◽  
Expression Profiles ◽  
Target Therapy ◽  
Drug Resistant ◽  
Anticancer Target ◽  
Synergistic Combinations ◽  
Selection Of ◽  
Resistant Cells

Sequential courses of anticancer target therapy lead to selection of drug-resistant cells, which results in continuous decrease of clinical response. Here we present a new approach for predicting effective combinations of target drugs, which act in a synergistic manner. Synergistic combinations of drugs may prevent or postpone acquired resistance, thus increasing treatment efficiency. We cultured human ovarian carcinoma SKOV-3 and neuroblastoma NGP-127 cancer cell lines in the presence of Tyrosine Kinase Inhibitors (Pazopanib, Sorafenib, and Sunitinib) and Rapalogues (Temsirolimus and Everolimus) for four months and obtained cell lines demonstrating increased drug resistance. We investigated gene expression profiles of intact and resistant cells by microarrays and analyzed alterations in 378 cancer-related signaling pathways using the bioinformatical platform Oncobox. This revealed numerous pathways linked with development of drug resistant phenotypes. Our approach is based on targeting proteins involved in as many as possible signaling pathways upregulated in resistant cells. We tested 13 combinations of drugs and/or selective inhibitors predicted by Oncobox and 10 random combinations. Synergy scores for Oncobox predictions were significantly higher than for randomly selected drug combinations. Thus, the proposed approach significantly outperforms random selection of drugs and can be adopted to enhance discovery of new synergistic combinations of anticancer target drugs.

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