scholarly journals Towards a catalogue of biodiversity databases: An ontological case study

2020 ◽  
Vol 8 ◽  
Author(s):  
Jarrett Blair ◽  
Rodger Gwiazdowski ◽  
Andrew Borrelli ◽  
Michelle Hotchkiss ◽  
Candace Park ◽  
...  

Biodiversity informatics depends on digital access to credible information about species. Many online resources host species’ data, but the lack of categorisation for these resources inhibits the growth of this entire field. To explore possible solutions, we examined the (now retired) Biodiversity Information Projects of the World (BIPW) dataset created by the Biodiversity Information Standards (TDWG); this project, which ran from 2007-2015 (officially removed from the TDWG website in 2018) was an attempt at organising the Web's biodiversity databases into an indexed list. To do this, we applied a simple classification scheme to score databases within BIPW based on nine data categories, to characterise trends and current compositions of this biodiversity e-infrastructure. Primarily, we found that of 600 databases investigated from BIPW, only 315 (~53%) were accessible at the time of this writing, underscoring the precarious nature of the biodiversity information landscape. Many of these databases are still available, but suffer accessibility issues such as link rot, thus putting the information they contain in danger of being lost. We propose that a community-driven database of biodiversity databases with an accompanying ontology could facilitate efficient discovery of relevant biodiversity databases and support smaller databases – which have the greatest risk of being lost.

2016 ◽  
Vol 11 ◽  
Author(s):  
Alex Asase ◽  
A. Townsend Peterson

Providing comprehensive, informative, primary, research-grade biodiversity information represents an important focus of biodiversity informatics initiatives. Recent efforts within Ghana have digitized >90% of primary biodiversity data records associated with specimen sheets in Ghanaian herbaria; additional herbarium data are available from other institutions via biodiversity informatics initiatives such as the Global Biodiversity Information Facility. However, data on the plants of Ghana have not as yet been integrated and assessed to establish how complete site inventories are, so that appropriate levels of confidence can be applied. In this study, we assessed inventory completeness and identified gaps in current Digital Accessible Knowledge (DAK) of the plants of Ghana, to prioritize areas for future surveys and inventories. We evaluated the completeness of inventories at ½° spatial resolution using statistics that summarize inventory completeness, and characterized gaps in coverage in terms of geographic distance and climatic difference from well-documented sites across the country. The southwestern and southeastern parts of the country held many well-known grid cells; the largest spatial gaps were found in central and northern parts of the country. Climatic difference showed contrasting patterns, with a dramatic gap in coverage in central-northern Ghana. This study provides a detailed case study of how to prioritize for new botanical surveys and inventories based on existing DAK.


Author(s):  
Jeff Gerbracht

Life history accounts and taxonomic monographs are a series of publications covering a higher taxonomic group where each account is a compilation of existing knowledge detailing many aspects of a species life history. These life history accounts are extensively used by researchers, ornithologists and conservationists as a main source for the current state of knowledge of a species. Birds, being one of the more easily seen and studied taxa, have a number of specialized life history accounts where data from a wide variety of disciplines are combined into a single easily accessible resource. The Cornell Lab of Ornithology (CLO) currently manages two of these series focused on different regions of the world, Birds of North America (BNA) and Neotropical Birds (NB). Lynx Edicions has published the Handbook of Birds of the World (HBW), an extensive set of avian monographs covering every species of bird in the world. A recently announced collaboration between CLO and Lynx Edicions provides us with the opportunity to bring together the extreme detail of the life history accounts from Birds of North America with the global coverage of HBW to produce a global, in-depth treatment of every species of bird in the world. The integration of life history information from these existing projects with different underlying taxonomies presents a variety of real-world examples of the challenges to be overcome to bring these life history accounts into alignment and provide the scientific and lay communities with taxonomically accurate and up to date information. The Handbook of Birds of the World currently follows the HBW and BirdLife Taxonomic Checklist v3 (with 11,126 species recognized) while Birds of North America and Neotropical Birds both follow the eBird/Clements checklist of birds of the world: v2018 (with 10,585 species recognized). Of the roughly 11,000 species of birds, nearly 9,500 are direct matches between HBW/BirdLife and Clements at the species or species to subspecies levels. The remaining concept mismatches fall into several basic categories including lump and split differences as well as differences in which subspecies are included or excluded. In this talk we will discuss the challenges we have faced with managing and merging life history accounts where the underlying taxonomies are fundamentally different. With a requirement to ensure that life history accounts remain accurate when the underlying concepts of the original sources differ, we employ a variety of processes, some very labor intensive and some requiring in-depth taxonomic knowledge to produce consolidated species accounts. Existing resources are integral to these type of integrations and in addition to the taxonomies themselves, cross-taxonomy mapping databases such as Avibase are key. Working through this process of consolidating life history accounts highlights the basic need for taxonomic management and publication toolsets built on underlying taxonomic and life history standards. Cross institutional collaboration to produce these toolsets will be key to their development and successful adoption across the biodiversity and taxonomic communities. I will also discuss and propose a set of taxonomic management tools based on taxonomic concepts, some which already exist and are used by bird taxonomists to annually update the Clements Checklist and some which need to be implemented before we can accurately manage and consolidate biodiversity information and the evolving taxonomies on which those data are based.


2020 ◽  
Vol 43 ◽  
Author(s):  
Michael Lifshitz ◽  
T. M. Luhrmann

Abstract Culture shapes our basic sensory experience of the world. This is particularly striking in the study of religion and psychosis, where we and others have shown that cultural context determines both the structure and content of hallucination-like events. The cultural shaping of hallucinations may provide a rich case-study for linking cultural learning with emerging prediction-based models of perception.


Author(s):  
Pramukti Dian Setianingrum ◽  
Farah Irmania Tsani

Backgroud: The World Health Organization (WHO) explained that the number of Hyperemesis Gravidarum cases reached 12.5% of the total number of pregnancies in the world and the results of the Demographic Survey conducted in 2007, stated that 26% of women with live births experienced complications. The results of the observations conducted at the Midwife Supriyati Clinic found that pregnant women with hyperemesis gravidarum, with a comparison of 10 pregnant women who examined their contents there were about 4 pregnant women who complained of excessive nausea and vomiting. Objective: to determine the hyperemesis Gravidarum of pregnant mother in clinic. Methods: This study used Qualitative research methods by using a case study approach (Case Study.) Result: The description of excessive nausea of vomiting in women with Hipermemsis Gravidarum is continuous nausea and vomiting more than 10 times in one day, no appetite or vomiting when fed, the body feels weak, blood pressure decreases until the body weight decreases and interferes with daily activities days The factors that influence the occurrence of Hyperemesis Gravidarum are Hormonal, Diet, Unwanted Pregnancy, and psychology, primigravida does not affect the occurrence of Hyperemesis Gravidarum. Conclusion: Mothers who experience Hyperemesis Gravidarum feel nausea vomiting continuously more than 10 times in one day, no appetite or vomiting when fed, the body feels weak, blood pressure decreases until the weight decreases and interferes with daily activities, it is because there are several factors, namely, hormonal actors, diet, unwanted pregnancy, and psychology.


Author(s):  
Melanie SARANTOU ◽  
Satu MIETTINEN

This paper addresses the fields of social and service design in development contexts, practice-based and constructive design research. A framework for social design for services will be explored through the survey of existing literature, specifically by drawing on eight doctoral theses that were produced by the World Design research group. The work of World Design researcher-designers was guided by a strong ethos of social and service design for development in marginalised communities. The paper also draws on a case study in Namibia and South Africa titled ‘My Dream World’. This case study presents a good example of how the social design for services framework functions in practice during experimentation and research in the field. The social design for services framework transfers the World Design group’s research results into practical action, providing a tool for the facilitation of design and research processes for sustainable development in marginal contexts.


2015 ◽  
Vol 11 (1) ◽  
pp. 41-54 ◽  
Author(s):  
Zsófia Demjén

This paper demonstrates how a range of linguistic methods can be harnessed in pursuit of a deeper understanding of the ‘lived experience’ of psychological disorders. It argues that such methods should be applied more in medical contexts, especially in medical humanities. Key extracts from The Unabridged Journals of Sylvia Plath are examined, as a case study of the experience of depression. Combinations of qualitative and quantitative linguistic methods, and inter- and intra-textual comparisons are used to consider distinctive patterns in the use of metaphor, personal pronouns and (the semantics of) verbs, as well as other relevant aspects of language. Qualitative techniques provide in-depth insights, while quantitative corpus methods make the analyses more robust and ensure the breadth necessary to gain insights into the individual experience. Depression emerges as a highly complex and sometimes potentially contradictory experience for Plath, involving both a sense of apathy and inner turmoil. It involves a sense of a split self, trapped in a state that one cannot overcome, and intense self-focus, a turning in on oneself and a view of the world that is both more negative and more polarized than the norm. It is argued that a linguistic approach is useful beyond this specific case.


Author(s):  
David Ungemah ◽  
Malaika Rivers ◽  
Stuart Anderson
Keyword(s):  

2020 ◽  
Vol 24 (2) ◽  
pp. 228-240
Author(s):  
Stefania Pontrandolfo ◽  
Marco Solimene

This article reflects on the conceptual debt that anthropology has developed towards the peoples it studies, by exploring the case-study of Gypsy/Roma anthropology. We argue that ethnographically-grounded research has enabled anthropologists to access and incorporate Gypsy/Roma visions and practices of the world. The flexible Gypsy epistemologies, which Gypsies/ Roma use in the social and cultural construction of particular forms of identity and mobility, have thus translated into a specific practice of theory, which has provided more adequate tools for grasping the complexity of reality and contributed to a decolonialisation of anthropological thought.


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