Towards a better understanding of past biotic drivers of river and floodplain geomorphology

Author(s):  
Annegret Larsen ◽  
Tony Reimann ◽  
Christoph Sperisen ◽  
Vincent Robin ◽  
Stuart N Lane

<p>Geomorphology has long considered the role of abiotic factors in geomorphic processes, including tectonics, geology, climate and relief, as well as humans impact upon them. Biotic factors however, including not only plants but also bacteria and protists, biofilms, fungi, insects, invertebrates, and animals are increasingly recognized as governing geomorphic processes on many spatial and temporal scales. We argue that if fauna are important as geological agents, then understanding the complex response of geomorphic systems to fauna is necessary to understand the past, present and future of the fluvial environment. It is not surprising that studies of the Late Quaternary evolution of fluvial morphodynamics have largely focused upon changes in the sedimentary soil-sediment sequences that result from climate change; (ii) vegetation change; and/or (iii) human impacts. Reconstruction of vegetation and climate from pollen and other records facilitates these analyses. But if animals are shown to be an important influence on geomorphic processes today, then it is quite possible that they were also important historically. For example, conclusive interpretation of Holocene river changes may be limited because of an incomplete or partial account of the presence and/or absence of data on the role of ecosystem engineers in modifying the riparian and aquatic ecosystems, including hydro-geomorphic processes. DNA found within historical deposits may be used to constrain the role of past ecosystem engineers. Analysis of ancient environmental DNA up to date includes palaeo-environmental DNA from sedimentary deposits (sedaDNA) from disseminated genetic material found within sedimentary archives, including paleo-dietary ancient DNA. Here, we use an analogue study investigating the present hydro-geomorphic and biogeochemical changes that the ecosystem engineer beaver (Castor fiber) creates at four sites in central Europe to better understand and quantify the effects of beaver ecosystem engineering on a seasonal to decadal scale. We utilize these results to interpret the chrono-stratigraphy of two Holocene beaver sites, including macro-fossil and sedaDNA sampling, and test for the first time if sedaDNA can support the investigation of beaver-induced palao-environmental conditions in river floodplains. We find that sedaDNA data and other palaeo-botanical proxies complement each other showing wider diversity of species than if the methods are used separately. However, care must be taken with regards of experimental setup, and further investigation into the effects of transport processes and/or quantitative representativeness is needed.</p>

2018 ◽  
Vol 43 (1) ◽  
pp. 24-45 ◽  
Author(s):  
Hannah R Miller ◽  
Stuart N Lane

Matthews’ 1992 geoecological model of vegetation succession within glacial forefields describes how following deglaciation the landscape evolves over time as the result of both biotic and abiotic factors, with the importance of each depending on the level of environmental stress within the system. We focus in this paper on how new understandings of abiotic factors and the potential for biogeomorphic feedbacks between abiotic and biotic factors makes further development of this model important. Disturbance and water dynamics are two abiotic factors that have been shown to create stress gradients that can drive early ecosystem succession. The subsequent establishment of microbial communities and vegetation can then result in biogeomorphic feedbacks via ecosystem engineering that influence the role of disturbance and water dynamics within the system. Microbes can act as ecosystem engineers by supplying nutrients (via remineralization of organic matter and nitrogen fixation), enhancing soil development, either decreasing (encouraging weathering) or increasing (binding sediment grains) geomorphic stability, and helping retain soil moisture. Vegetation can act as an ecosystem engineer by fixing nitrogen, enhancing soil development, modifying microbial community structure, creating seed banks, and increasing geomorphic stability. The feedbacks between vegetation and water dynamics in glacial forefields are still poorly studied. We propose a synthesized model of ecosystem succession within glacial forefields that combines Matthews’ initial geoecological model and Corenblit's model to illustrate how gradients in environmental stress combined with successional time drive the balance between abiotic and biotic factors and ultimately determine the successional stage and potential for biogeomorphic feedbacks.


2021 ◽  
Vol 12 ◽  
Author(s):  
Polina Beskrovnaya ◽  
Danielle L. Sexton ◽  
Mona Golmohammadzadeh ◽  
Ameena Hashimi ◽  
Elitza I. Tocheva

Sporulation is a specialized developmental program employed by a diverse set of bacteria which culminates in the formation of dormant cells displaying increased resilience to stressors. This represents a major survival strategy for bacteria facing harsh environmental conditions, including nutrient limitation, heat, desiccation, and exposure to antimicrobial compounds. Through dispersal to new environments via biotic or abiotic factors, sporulation provides a means for disseminating genetic material and promotes encounters with preferable environments thus promoting environmental selection. Several types of bacterial sporulation have been characterized, each involving numerous morphological changes regulated and performed by non-homologous pathways. Despite their likely independent evolutionary origins, all known modes of sporulation are typically triggered by limited nutrients and require extensive membrane and peptidoglycan remodeling. While distinct modes of sporulation have been observed in diverse species, two major types are at the forefront of understanding the role of sporulation in human health, and microbial population dynamics and survival. Here, we outline endospore and exospore formation by members of the phyla Firmicutes and Actinobacteria, respectively. Using recent advances in molecular and structural biology, we point to the regulatory, genetic, and morphological differences unique to endo- and exospore formation, discuss shared characteristics that contribute to the enhanced environmental survival of spores and, finally, cover the evolutionary aspects of sporulation that contribute to bacterial species diversification.


Author(s):  
Pierre Taberlet ◽  
Aurélie Bonin ◽  
Lucie Zinger ◽  
Eric Coissac

Chapter 10 “Environmental DNA for functional diversity” discusses the potential of environmental DNA to assess functional diversity. It first focuses on DNA metabarcoding and discusses the extent to which this approach can be used and/or optimized to retrieve meaningful information on the functions of the target community. This knowledge usually involves coarsely defined functional groups (e.g., woody, leguminous, graminoid plants; shredders or decomposer soil organisms; pathogenicity or decomposition role of certain microorganisms). Chapter 10 then introduces metagenomics and metatranscriptomics approaches, their advantages, but also the challenges and solutions to appropriately sampling, sequencing these complex DNA/RNA populations. Chapter 10 finally presents several strategies and software to analyze metagenomes/metatranscriptomes, and discusses their pros and cons.


2021 ◽  
Vol 22 (9) ◽  
pp. 4484
Author(s):  
Ewa Filip ◽  
Lidia Skuza

Horizontal gene transfer (HGT)- is defined as the acquisition of genetic material from another organism. However, recent findings indicate a possible role of HGT in the acquisition of traits with adaptive significance, suggesting that HGT is an important driving force in the evolution of eukaryotes as well as prokaryotes. It has been noted that, in eukaryotes, HGT is more prevalent than originally thought. Mitochondria and chloroplasts lost a large number of genes after their respective endosymbiotic events occurred. Even after this major content loss, organelle genomes still continue to lose their own genes. Many of these are subsequently acquired by intracellular gene transfer from the original plastid. The aim of our review was to elucidate the role of chloroplasts in the transfer of genes. This review also explores gene transfer involving mitochondrial and nuclear genomes, though recent studies indicate that chloroplast genomes are far more active in HGT as compared to these other two DNA-containing cellular compartments.


Animals ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 203
Author(s):  
María Gemma Millán de la Blanca ◽  
Eva Martínez-Nevado ◽  
Cristina Castaño ◽  
Juncal García ◽  
Berenice Bernal ◽  
...  

The American flamingo is a useful model for the development of successful semen cryopreservation procedures to be applied to threatened related species from the family Phoenicopteridae, and to permit genetic material banking. Current study sought to develop effective sperm cryopreservation protocols through examining the influences of two permeating cryoprotectants and the seminal plasma removal. During two consecutive years (April), semen samples were collected and frozen from American flamingos. In the first year, the effect of two permeating cryoprotectants, DMA (dimethylacetamide) (6%) or Me2SO (dimethylsulphoxide) (8%), on frozen–thawed sperm variables were compared in 21 males. No differences were seen between DMA and Me2SO for sperm motility, sperm viability, and DNA fragmentation after thawing. In the second year, the role of seminal plasma on sperm cryoresistance was investigated in 31 flamingos. Sperm samples were cryopreserved with and without seminal plasma, using Me2SO (8%) as a cryoprotectant. The results showed that samples with seminal plasma had higher values than samples without seminal plasma for the following sperm variables: Straight line velocity (22.40 µm/s vs. 16.64 µm/s), wobble (75.83% vs. 69.40%), (p < 0.05), linearity (62.73% vs. 52.01%) and straightness (82.38% vs. 73.79%) (p < 0.01); but acrosome integrity was lower (55.56% vs. 66.88%) (p < 0.05). The cryoresistance ratio (CR) was greater in samples frozen with seminal plasma than without seminal plasma for CR-progressive motility (138.72 vs. 54.59), CR-curvilinear velocity (105.98 vs. 89.32), CR-straight line velocity (152.77 vs. 112.58), CR-average path velocity (122.48 vs. 98.12), CR-wobble (111.75 vs. 102.04) (p < 0.05), CR-linearity (139.41 vs. 113.18), and CR-straightness (124.02 vs. 109.97) (p < 0.01). This research demonstrated that there were not differences between Me2SO and DMA to successful freezing sperm of flamingos; seminal plasma removal did not provide a benefit for sperm cryopreservation.


2006 ◽  
Vol 258-260 ◽  
pp. 63-67
Author(s):  
V.M. Chumarev ◽  
V.P. Maryevich ◽  
V.A. Shashmurin

Diffusion processes play a dominant part in the macro kinetics of Fe, Ni and Co oxidation by calcium and sodium sulfates. Here, the reaction product forms a compact covering which spatially divides the reagents on the surface in the same way as in the oxidation and sulfidization of metals by oxygen and sulfur. Therefore, it is possible to assume in advance that interaction of metals with calcium and sodium sulfates will be determined not by the actual chemical reaction properly but by the diffusion transport processes.


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