scholarly journals Automated geological map deconstruction for 3D model construction

2021 ◽  
Author(s):  
Mark Jessell ◽  
Vitaliy Ogarko ◽  
Mark Lindsay ◽  
Ranee Joshi ◽  
Agnieszka Piechocka ◽  
...  
Keyword(s):  
Data Extraction ◽  
Regional Scale ◽  
3D Modelling ◽  
Primary Data ◽  
Conceptual Information ◽  
Information Studies ◽  
Geological Map ◽  
Hidden Biases ◽  
Positional Data ◽  
Topological Data

Abstract. We present two Python libraries (map2loop and map2model) which combine the observations available in digital geological maps with conceptual information, including assumptions regarding the subsurface extent of faults and plutons to provide sufficient constraints to build a reasonable 3D geological model. At a regional scale, the best predictor for the 3D geology of the near-subsurface is often the information contained in a geological map. This remains true even after recognising that a map is also a model, with all the potential for hidden biases that this model status implies. One challenge we face is the difficulty in reproducibly preparing input data for 3D geological models. The information stored in a map falls into three categories of geometric data: positional data such as the position of faults, intrusive and stratigraphic contacts; gradient data, such as the dips of contacts or faults and topological data, such as the age relationships of faults and stratigraphic units, or their adjacency relationships. This work is being conducted within the Loop Consortium, in which algorithms are being developed that allow automatic deconstruction of a geological map to recover the necessary positional, gradient and topological data as inputs to different 3D geological modelling codes. This automation provides significant advantages: it reduces the time to first prototype models; it clearly separates the primary data from subsets produced from filtering via data reduction and conceptual constraints; and provides a homogenous pathway to sensitivity analysis, uncertainty quantification and Value of Information studies. We use the example of the re-folded and faulted Hamersley Basin in Western Australia to demonstrate a complete workflow from data extraction to 3D modelling using two different Open Source 3D modelling engines: GemPy and LoopStructural.

scholarly journals Automated geological map deconstruction for 3D model construction using <i>map2loop</i> 1.0 and <i>map2model</i> 1.0

2021 ◽  
Vol 14 (8) ◽  
pp. 5063-5092
Author(s):  
Mark Jessell ◽  
Vitaliy Ogarko ◽  
Yohan de Rose ◽  
Mark Lindsay ◽  
Ranee Joshi ◽  
...  
Keyword(s):  
Data Extraction ◽  
Regional Scale ◽  
3D Modelling ◽  
Stochastic Simulations ◽  
Model Construction ◽  
Conceptual Information ◽  
Geological Maps ◽  
Information Studies ◽  
Geological Map ◽  
Positional Data

Abstract. At a regional scale, the best predictor for the 3D geology of the near-subsurface is often the information contained in a geological map. One challenge we face is the difficulty in reproducibly preparing input data for 3D geological models. We present two libraries (map2loop and map2model) that automatically combine the information available in digital geological maps with conceptual information, including assumptions regarding the subsurface extent of faults and plutons to provide sufficient constraints to build a prototype 3D geological model. The information stored in a map falls into three categories of geometric data: positional data, such as the position of faults, intrusive, and stratigraphic contacts; gradient data, such as the dips of contacts or faults; and topological data, such as the age relationships of faults and stratigraphic units or their spatial adjacency relationships. This automation provides significant advantages: it reduces the time to first prototype models; it clearly separates the data, concepts, and interpretations; and provides a homogenous pathway to sensitivity analysis, uncertainty quantification, and value of information studies that require stochastic simulations, and thus the automation of the 3D modelling workflow from data extraction through to model construction. We use the example of the folded and faulted Hamersley Basin in Western Australia to demonstrate a complete workflow from data extraction to 3D modelling using two different open-source 3D modelling engines: GemPy and LoopStructural.

scholarly journals Prevalence of retinopathy in prediabetes: protocol for a systematic review and meta-analysis

BMJ Open ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. e040997
Author(s):  
Varo Kirthi ◽  
Paul Nderitu ◽  
Uazman Alam ◽  
Jennifer Evans ◽  
Sarah Nevitt ◽  
...  
Keyword(s):  
Systematic Review ◽  
Diabetic Retinopathy ◽  
Data Extraction ◽  
Meta Analysis ◽  
International Diabetes Federation ◽  
Current Data ◽  
Risk Of Bias ◽  
Fundus Photography ◽  
Primary Data ◽  
Cochrane Library

IntroductionThere is growing evidence of a higher than expected prevalence of retinopathy in prediabetes. This paper presents the protocol of a systematic review and meta-analysis of retinopathy in prediabetes. The aim of the review is to estimate the prevalence of retinopathy in prediabetes and to summarise the current data.Methods and analysisThis protocol is developed in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Protocols (PRISMA-P) guidelines. A comprehensive electronic bibliographic search will be conducted in MEDLINE, EMBASE, Web of Science, Cumulative Index to Nursing and Allied Health Literature (CINAHL), Google Scholar and the Cochrane Library. Eligible studies will report prevalence data for retinopathy on fundus photography in adults with prediabetes. No time restrictions will be placed on the date of publication. Screening for eligible studies and data extraction will be conducted by two reviewers independently, using predefined inclusion criteria and prepiloted data extraction forms. Disagreements between the reviewers will be resolved by discussion, and if required, a third (senior) reviewer will arbitrate.The primary outcome is the prevalence of any standard features of diabetic retinopathy (DR) on fundus photography, as per International Clinical Diabetic Retinopathy Severity Scale (ICDRSS) classification. Secondary outcomes are the prevalence of (1) any retinal microvascular abnormalities on fundus photography that are not standard features of DR as per ICDRSS classification and (2) any macular microvascular abnormalities on fundus photography, including but not limited to the presence of macular exudates, microaneurysms and haemorrhages. Risk of bias for included studies will be assessed using a validated risk of bias tool for prevalence studies. Pooled estimates for the prespecified outcomes of interest will be calculated using random effects meta-analytic techniques. Heterogeneity will be assessed using the I2 statistic.Ethics and disseminationEthical approval is not required as this is a protocol for a systematic review and no primary data are to be collected. Findings will be disseminated through peer-reviewed publications and presentations at national and international meetings including Diabetes UK, European Association for the Study of Diabetes, American Diabetes Association and International Diabetes Federation conferences.PROSPERO registration numberCRD42020184820.

scholarly journals User involvement in adolescents’ mental healthcare: protocol for a systematic review

BMJ Open ◽  
2017 ◽  
Vol 7 (12) ◽  
pp. e018800
Author(s):  
Petter Viksveen ◽  
Stig Erlend Bjønness ◽  
Siv Hilde Berg ◽  
Nicole Elizabeth Cardenas ◽  
Julia Rose Game ◽  
...  
Keyword(s):  
Systematic Review ◽  
Critical Appraisal ◽  
Research Evidence ◽  
Data Extraction ◽  
Mental Healthcare ◽  
User Involvement ◽  
Cochrane Collaboration ◽  
Research Literature ◽  
Primary Data ◽  
Evaluation Approach

IntroductionUser involvement has become a growing importance in healthcare. The United Nations state that adolescents have a right to be heard, and user involvement in healthcare is a legal right in many countries. Some research provides an insight into the field of user involvement in somatic and mental healthcare for adults, but little is known about user involvement in adolescents’ mental healthcare, and no overview of the existing research evidence exists.Methods and analysisThe aim of this systematic review is to provide an overview of existing research reporting on experiences with and the effectiveness and safety issues associated with user involvement for adolescents’ mental healthcare at the individual and organisational level. A systematic literature search and assessment of published research in the field of user involvement in adolescents’ mental healthcare will be carried out. Established guidelines will be used for data extraction (Cochrane Collaboration guidelines, Strengthening the Reporting of Observational studies in Epidemiology and Critical Appraisal Skills Programme (CASP)), critical appraisal (Cochrane Collaboration guidelines and Pragmatic-Explanatory Continuum Indicator Summary) and reporting of results (Preferred Reporting Items for Systematic reviews and Meta-Analyses, Consolidated Standards of Reporting Trials and CASP). Confidence in the research evidence will be assessed using the Grading of Recommendations Assessment, Development and Evaluation approach. Adolescents are included as coresearchers for the planning and carrying out of this systematic review. This systematic review will provide an overview of the existing research literature and thereby fill a knowledge gap. It may provide various stakeholders, including decision-makers, professionals, individuals and their families, with an overview of existing knowledge in an underexplored field of research.Ethics and disseminationEthics approval is not required for this systematic review as we are not collecting primary data. The results will be published in a peer-reviewed journal and at conference presentations and will be shared with stakeholder groups.

scholarly journals The Safety and Efficacy of Phage Therapy for Superficial Bacterial Infections: A Systematic Review

Antibiotics ◽  
2020 ◽  
Vol 9 (11) ◽  
pp. 754
Author(s):  
Angharad Steele ◽  
Helen J. Stacey ◽  
Steven de Soir ◽  
Joshua D. Jones
Keyword(s):  
Systematic Review ◽  
Adverse Effects ◽  
Bacterial Infections ◽  
Chronic Wound ◽  
Phage Therapy ◽  
Data Extraction ◽  
Primary Data ◽  
Burn Wound ◽  
Promising Alternative ◽  
Safety And Efficacy

Superficial bacterial infections, such as dermatological, burn wound and chronic wound/ulcer infections, place great human and financial burdens on health systems globally and are often complicated by antibiotic resistance. Bacteriophage (phage) therapy is a promising alternative antimicrobial strategy with a 100-year history of successful application. Here, we report a systematic review of the safety and efficacy of phage therapy for the treatment of superficial bacterial infections. Three electronic databases were systematically searched for articles that reported primary data about human phage therapy for dermatological, burn wound or chronic wound/ulcer infections secondary to commonly causative bacteria. Two authors independently assessed study eligibility and performed data extraction. Of the 27 eligible reports, eight contained data on burn wound infection (n = 156), 12 on chronic wound/ulcer infection (n = 327) and 10 on dermatological infections (n = 1096). Cautionary pooled efficacy estimates from the studies that clearly reported efficacy data showed clinical resolution or improvement in 77.5% (n = 111) of burn wound infections, 86.1% (n = 310) of chronic wound/ulcer infections and 94.14% (n = 734) of dermatological infections. Over half of the reports that commented on safety (n = 8/15), all published in or after 2002, did not express safety concerns. Seven early reports (1929–1987), described adverse effects consistent with the administration of raw phage lysate and co-administered bacterial debris or broth. This review strongly suggests that the use of purified phage to treat superficial bacterial infections can be highly effective and, by various routes of administration, is safe and without adverse effects.

scholarly journals Environmental risk factors of leptospirosis in urban settings: a systematic review protocol

BMJ Open ◽  
2019 ◽  
Vol 9 (1) ◽  
pp. e023359
Author(s):  
Mohd Hatta Abdul Mutalip ◽  
Mohd Amierul Fikri Mahmud ◽  
Noor Aliza Lodz ◽  
Norzawati Yoep ◽  
Eida Nurhadzira Muhammad ◽  
...  
Keyword(s):  
Risk Factors ◽  
Systematic Review ◽  
Environmental Risk ◽  
Observational Studies ◽  
Data Extraction ◽  
Meta Analysis ◽  
Environmental Risk Factors ◽  
Primary Data ◽  
Urban Settings ◽  
Susceptible Populations

IntroductionLeptospirosis is the most common zoonotic disease that causes morbidity and mortality worldwide. The disease can cause sporadic epidemics and recent epidemics have become more apparent in urban localities. There is lack of documented evidence on the specific risk factors of leptospirosis infection among the urbanites, thereby impeding initiatives for prevention in urban settings. We aim to systematically search published articles and synthesise evidence on the risk factors associated with leptospirosis infection among the susceptible populations in urban localities, particularly to identify the risk factors of non-recreational leptospirosis infection.Methods and analysisWe will conduct a systematic review of observational studies that investigated environmental risk factors of leptospirosis in urban localities. The search will be performed for any eligible articles from selected electronic databases from 1970 until May 2018. The study will include any studies that investigated risk factors of confirmed leptospirosis cases who acquired the infection in urban locality, particularly exposures from the non-recreational and non-water-related activities. Study selection and reporting will follow the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines and Meta-Analysis of Observational Studies in Epidemiology guideline. All data will be extracted using a standardised data extraction form and quality of the studies will be assessed using the Newcastle-Ottawa Scale guideline. Descriptive and meta-analysis will be performed by calculating the standardised median ORs and risk ratios for types of the non-recreational risk factors stratified by social, living conditions and environmental exposures, types of reservoirs and transmissions and types of activities and employments associated with leptospirosis infection in urban locality.Ethics and disseminationNo primary data will be collected thus no formal ethical approval is required. The results will be disseminated though a peer-reviewed publication and conference presentation.PROSPERO registration numberCRD42018090820.

scholarly journals Geology of Shantipur-Wami Taksar Areas of Gulmi-Baglung Districts, Western Nepal

2020 ◽  
Vol 22 ◽  
pp. 29-32
Author(s):  
Sushant Sapkota ◽  
Pashupati Gaire ◽  
Kabi Raj Paudyal
Keyword(s):  
Regional Scale ◽  
Mineral Resources ◽  
Geological Structure ◽  
Geological Mapping ◽  
The North ◽  
Copper Mineralization ◽  
Metallic Mineral ◽  
Geological Map ◽  
Map Scale ◽  
Geological Units

The study area represents a small part of the Lesser Himalaya in western Nepal and lies about 346 km west from Kathmandu. It covers 250 km area representing some parts of Gulmi and Baglung districts. The area was selected for the present study on the impression from the previous geological map that has showed some metallic mineral resources like iron, copper and lead in the region. Similarly, studies reveal that there is very complicated geological structure which raised the interest for the study. Main objective of the study was to prepare a geological map of the area in a scale of 1:25,000 and study the possible mineral deposits. An extensive geological mapping was carried out in the field covering at one data within one centimetre of the map scale and large number of samples was collected for the petrographic as well as ore genesis studies. The rocks of the region were mapped under two geological units as the Nourpul Formation (older) and the Dhading Dolomite (younger).  There are a series of folds in the area. From regional to micro-scale all folds are trending towards east-west. The Badi Gad Fault and the Harewa Khola Thrust are the regional scale thrust mapped in the area. The Badi Gad is considered as a strike-slip in nature. The Harewa Khola Thrust is probably an imbricate fault. It has propagated to the north which is out of sequence in nature. Some metallic minerals like copper and iron along with old working mines were observed during the study. Occurrences of copper and iron mineralization has been mapped and described. Present study revealed that copper mineralization is limited within the veins and boudinage forms as hydrothermal deposit while the iron is tabular and syngenetic in nature.

scholarly journals Protocol for a systematic review and qualitative synthesis of information quality frameworks in eHealth

BMJ Open ◽  
2019 ◽  
Vol 9 (3) ◽  
pp. e024722 ◽  
Author(s):  
Kayode Philip Fadahunsi ◽  
James Tosin Akinlua ◽  
Siobhan O’Connor ◽  
Petra A Wark ◽  
Joseph Gallagher ◽  
...  
Keyword(s):  
Systematic Review ◽  
Patient Safety ◽  
Global Health ◽  
Information Quality ◽  
Health Management ◽  
Data Extraction ◽  
Primary Data ◽  
Academic Journal ◽  
Qualitative Synthesis ◽  
Eligibility Criteria

IntroductionElectronic health (eHealth) applications have become a very large repository of health information which informs critical decisions relating to the diagnosis, treatment and prognosis of patients. Poor information quality (IQ) within eHealth may compromise patient safety. Evaluation of IQ in eHealth is therefore necessary to promote patient safety. An IQ framework specifies what aspects of information to assess and how to conduct the assessment. This systematic review aims to identify dimensions within existing IQ frameworks in eHealth and develop a new IQ framework for the assessment of eHealth.Method and analysisWe will search Embase, Medline, PubMed, Cumulative Index to Nursing and Allied Health Literature, Maternity and Infant Care, PsycINFO (American Psychological Association), Global Health, Scopus, ProQuest Dissertations and Theses Global, Health Management Information Consortium and reference lists of relevant publications for articles published in English until November 2018. Studies will be selected by two independent reviewers based on prespecified eligibility criteria. Two reviewers will independently extract data in each eligible study using a prepiloted Microsoft Excel data extraction form. Thematic synthesis will be employed to define IQ dimensions and develop a new IQ framework for eHealth.Ethics and disseminationEthical approval is not required for this systematic review as primary data will not be collected. The result of the review will be disseminated through publication in an academic journal and scientific conferences.PROSPERO registration numberCRD42018097142.

PERANCANGAN BRAND CAMPAIGN SEBAGAI MEDIA PROMOSI THE PETITE PROJECT

Jurnal VICIDI ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 1-21
Author(s):  
Jesslyn Jovita
Keyword(s):  
Social Media ◽  
Product Development ◽  
Growth And Development ◽  
Extraction Method ◽  
Online Survey ◽  
Data Extraction ◽  
Secondary Data ◽  
Primary Data ◽  
Final Project ◽  
Spare Time

Creativity is very important to be honed, especially during the golden age of children, which is an important moment in the growth of every child which is very dear to miss and is a period that cannot be repeated. However, most parents still do not know the importance of honing children's creativity where they are still in the stage of growth and development, where their creativity needs to be honed as well as filling their children's spare time while at home. The design of this final project is carried out in order to educate the market about the importance of developing or honing children's creativity, so The Petite Project comes with a product, namely the DIY pom-pom kit which already contains tools and materials to make key chains that make it a more practical product without having to. buy tools and materials separately again. Because today many people use social media, the appropriate promotional media is social media to introduce and promote The Petite Project products in the form of a brand campaign. In collecting data for the purposes of writing a final project, the primary data and secondary data extraction method is used, where primary data is obtained through interviews with expert users and extreme users, while secondary data is obtained through literature sources from various books and journals. And the last one is done by distributing an online survey in the form of a Google Form with the aim of testing the design results that have been made to the target audience which will later be useful as criticism and suggestions for brand and product development from The Petite Project. The design results are in the form of a brand campaign to promote products as well as educate the market about the importance of honing children's creativity.   Keywords: Craft, Creativity, Product for kids, Promotion media, Social media.

scholarly journals Environmental management for dengue control: a systematic review protocol

BMJ Open ◽  
2019 ◽  
Vol 9 (5) ◽  
pp. e026101
Author(s):  
Mohd Amierul Fikri Mahmud ◽  
Mohd Hatta Abdul Mutalip ◽  
Noor Aliza Lodz ◽  
Eida Nurhadzira Muhammad ◽  
Norzawati Yoep ◽  
...  
Keyword(s):  
Systematic Review ◽  
Environmental Management ◽  
Assessment Tool ◽  
Data Extraction ◽  
Meta Analysis ◽  
Human Behaviour ◽  
Primary Data ◽  
Environmental Modification ◽  
Environmental Manipulation ◽  
Dengue Control

IntroductionDengue is among the most important mosquito-borne diseases, with more than half of the world’s population at risk of infection in dengue endemic countries. Environmental management, which includes any activities that involve environmental modification, environmental manipulation and changes to human behaviour have been used to mitigate the risk of dengue transmission. In this protocol, we will integrate the data from various sources to assess the overall effect of environmental management on the incidence of dengue and other entomological indices.Methods and analysesWe will conduct a systematic review of intervention that assess the effect of environmental management on the incidence of dengue and/or entomological indices. We will include any studies that include intervention through environmental management for dengue control, involving environmental modification, environmental manipulation and changes to human behaviour. A comprehensive search will be performed in electronic databases PUBMED, CENTRAL, SCOPUS, Web of Science and relevant research websites such as PROPSERO, WHO ICTRP and ClinicalTrials.gov to identify studies that meet our inclusion criteria. A systematic approach to searching, screening, reviewing and data extraction will be applied based on Preferred Reporting Items for Systematic reviews and Meta-Analysis. Titles, abstract, keywords for eligibility will be examined independently by researchers. The quality of the included studies will be assessed using quality assessment tool for studies with diverse design and Cochrane risk of bias tool. The characteristics of the selected articles will be described based on the study design, types of intervention and outcomes of the study in various countries. These include the types of environmental management intervention methods and the effectiveness of the intervention in reducing dengue cases or incidence and impact on entomological indices.Ethics and disseminationWe will register this systematic review with the National Medical Research Register, Ministry of Health Malaysia. This protocol also had been registered with the PROSPERO. No ethical approval is necessary, as there will be no collection of primary data. The results will be disseminated though a peer-reviewed publication and conference presentation.Trial registration numberCRD42018092189.

scholarly journals Analytic Signal and Euler Depth Interpretation of Magnetic Anomalies: Applicability to the Beatrice Greenstone Belt

2015 ◽  
Vol 7 (4) ◽  
pp. 108
Author(s):  
Thabisani Ndlovu. ◽  
Mashingaidze R. T. ◽  
Mpofu P.
Keyword(s):  
Regional Scale ◽  
Data Interpretation ◽  
Analytic Signal ◽  
Magnetic Data ◽  
Body Location ◽  
Geological Map ◽  
Ground Magnetic ◽  
Depth Relationship ◽  
Two Parameters ◽  
Good Agreement

We apply the Analytic Signal and Euler depth filtering techniques on magnetic data to identify a magnetic causative body location-depth relationship, two parameters of importance in both geophysical exploration and ore body modelling. We identify a dipping magnetic contact from the interpreted Euler depth anomalies, showing a good agreement with both the Total Field Magnetic (TFM) map and the Analytic Signal (AS) map. The Euler depth anomalies correlate well with the locations and edges of shallow causative bodies. The deeper Euler interpreted sources explain the magnetic high on the regional aeromagnetic map which is coincident with neither geological contacts nor the more recent dolerite intrusions. This suggests that the magnetic highs on the regional aeromagnetic map are due to deep seated sources, otherwise invisible on the regional geological map. The results show the usefulness and relevancy of these two filters not only in interpreting routine TFM data from the study area, but up to a regional scale. While the aeromagnetic data shows that the magnetisation pattern is predominantly divorced from the geological map, the ground magnetic data interpretation points to a more recent magnetisation of the belt, enabling conclusions to be drawn about the geological history and structural geology otherwise not evident on the geological map.

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