A fresh look at Cladarosymblema narrienense, a tetrapodomorph fish (Sarcopterygii: Megalichthyidae) from the Carboniferous of Australia, illuminated via X-ray tomography

Background The megalichthyids are one of several clades of extinct tetrapodomorph fish that lived throughout the Devonian–Permian periods. They are advanced “osteolepidid-grade” fishes that lived in freshwater swamp and lake environments, with some taxa growing to very large sizes. They bear cosmine-covered bones and a large premaxillary tusk that lies lingually to a row of small teeth. Diagnosis of the family remains controversial with various authors revising it several times in recent works. There are fewer than 10 genera known globally, and only one member definitively identified from Gondwana. Cladarosymblema narrienense Fox et al. 1995 was described from the Lower Carboniferous Raymond Formation in Queensland, Australia, on the basis of several well-preserved specimens. Despite this detailed work, several aspects of its anatomy remain undescribed. Methods Two especially well-preserved 3D fossils of Cladarosymblema narrienense, including the holotype specimen, are scanned using synchrotron or micro-computed tomography (µCT), and 3D modelled using specialist segmentation and visualisation software. New anatomical detail, in particular internal anatomy, is revealed for the first time in this taxon. A novel phylogenetic matrix, adapted from other recent work on tetrapodomorphs, is used to clarify the interrelationships of the megalichthyids and confirm the phylogenetic position of C. narrienense. Results Never before seen morphological details of the palate, hyoid arch, basibranchial skeleton, pectoral girdle and axial skeleton are revealed and described. Several additional features are confirmed or updated from the original description. Moreover, the first full, virtual cranial endocast of any tetrapodomorph fish is presented and described, giving insight into the early neural adaptations in this group. Phylogenetic analysis confirms the monophyly of the Megalichthyidae with seven genera included (Askerichthys, Cladarosymblema, Ectosteorhachis, Mahalalepis, Megalichthys, Palatinichthys, and Sengoerichthys). The position of the megalichthyids as sister group to canowindrids, crownward of “osteolepidids” (e.g.,Osteolepis and Gogonasus), but below “tristichopterids” such as Eusthenopteron is confirmed, but our findings suggest further work is required to resolve megalichthyid interrelationships.

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Phylogenetic relationships of the subfamily Pyrgulinae (Gastropoda: Caenogastropoda: Hydrobiidae) with emphasis on the genus Dianella Gude, 1913

Zootaxa ◽

10.11646/zootaxa.891.1.1 ◽

2005 ◽

Vol 891 (1) ◽

pp. 1 ◽

Cited By ~ 26

Author(s):

Magdalena Szarowska ◽

Andrzej Falniowski ◽

FRANK Riedel ◽

Thomas Wilke

Keyword(s):

Type Species ◽

Sister Group ◽

Molecular Data ◽

Character Evolution ◽

Phylogenetic Position ◽

Sister Group Relationship ◽

Data Sets ◽

Sequencing Data ◽

The Family ◽

Anatomical Characters

The phylogenetic position of the subfamily Pyrgulinae within the superfamily Rissooidea has been discussed very controversially. Different data sets not only led to different evolutionary scenarios but also to different systematic classifications of the taxon. The present study uses detailed anatomical data for two pyrgulinid taxa, the type species of the subfamily, Pyrgula annulata (Linnaeus, 1767), and the type species of the little known genus Dianella, D. thiesseana (Kobelt, 1878), as well as DNA sequencing data of three gene fragments from representatives of eight rissooidean families to A) infer the phylogenetic position of Pyrgulinae with emphasis on its relationships within the family Hydrobiidae, B) to study the degree of concordance between anatomyand DNAbased phylogenies and C) to trace the evolution of anatomical characters along a multi-gene molecular phylogeny to find the anatomical characters that might be informative for future cladistic analyses. Both anatomical and molecular data sets indicate either a very close or even sister-group relationship of Pyrgulinae and Hydrobiinae. However, there are major conflicts between the two data sets on and above the family level. Notably, Hydrobiidae is not monophyletic in the anatomical analysis. The reconstruction of anatomical character evolution indicates that many of the characters on which the European hydrobioid taxonomy is primarily based upon are problematic. The inability to clearly separate some hydrobiids from other distinct families based on those characters might explain why until only a few years ago, "Hydrobiidae" was a collecting box for numerous rissooidean taxa (mostly species with shells small and lacking any characteristic features). The present study not only stresses the need for comprehensive molecular studies of rissooidean taxa, it also demonstrates that much of the problems surrounding anatomical analyses in rissooidean taxa are due to the lack of comprehensive data for many representatives. In order to aid future comparativeanatomical studies and a better understanding of character evolution in the species-rich family Hydrobiidae, detailed anatomical descriptions for P. annulata and D. thiesseana are provided.Key words: Pyrgulinae, Pyrgula, Dianella, Hydrobiidae, phylogeny, DNA, anatomy, Greece

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Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY ◽

10.1099/ijs.0.63408-0 ◽

2007 ◽

Vol 57 (3) ◽

pp. 463-466 ◽

Cited By ~ 28

Author(s):

Kelly P. Nevin ◽

Dawn E. Holmes ◽

Trevor L. Woodard ◽

Sean F. Covalla ◽

Derek R. Lovley

Keyword(s):

Type Strain ◽

Original Description ◽

16S Rrna Genes ◽

Rrna Genes ◽

Phylogenetic Position ◽

Temperature Optimum ◽

Ph Optimum ◽

Donor And Acceptor ◽

The Family ◽

Electron Donor And Acceptor

Reclassification of the species Trichlorobacter thiogenes as Geobacter thiogenes comb. nov. is proposed on the basis of physiological traits and phylogenetic position. Characteristics additional to those provided in the original description revealed that the type strain (strain K1T=ATCC BAA-34T=JCM 14045T) has the ability to use Fe(III) as an electron acceptor for acetate oxidation and has an electron donor and acceptor profile typical of a Geobacter species, contains abundant c-type cytochromes, and has a temperature optimum of 30 °C and a pH optimum near pH 7.0; traits typical of members of the genus Geobacter. Phylogenetic analysis of nifD, recA, gyrB, rpoB, fusA and 16S rRNA genes further indicated that T. thiogenes falls within the Geobacter cluster of the family Geobacteraceae. Based on extensive phylogenetic evidence and the fact that T. thiogenes has the hallmark physiological characteristics of a Geobacter species, Trichlorobacter thiogenes should be reclassified as a member of the genus Geobacter.

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Taxonomy, biogeography and phylogenetic position of the North African Ceramius maroccanus-complex (Hymenoptera: Vespidae, Masarinae)

Insect Systematics & Evolution ◽

10.1163/187631200x00156 ◽

1999 ◽

Vol 30 (3) ◽

pp. 323-348

Author(s):

Volker Mauss

Keyword(s):

Sister Group ◽

Species Group ◽

Phylogenetic Position ◽

Flight Period ◽

North African ◽

Separate Species ◽

The North ◽

As Species ◽

The Status ◽

First Time

AbstractThe Ceramius maroccanus-complex is endemic to southwestern Morocco. The status of C. maroccanus (Giordani Soika 1957) and C. montanus Gusenleitner 1990 as separate species is confirmed, C. rubripes Gusenleitner 1990 stat. n. and C. gessi sp. n. are recognized as species for the first time. The four species are redescribed/described and illustrated, and their distribution and flight period are analysed. Identification keys to males and females are provided. The C. maroccanus-complex is a monophyletic group within 'Species group 7' of Richards 1962, and is probably the sister group of the C. lusitanicus-complex.

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Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha)

Zootaxa ◽

10.11646/zootaxa.1535.1.1 ◽

2007 ◽

Vol 1535 (1) ◽

pp. 1-92 ◽

Cited By ~ 37

Author(s):

DALTON DE SOUZA AMORIM ◽

EIRIK RINDAL

Keyword(s):

Phylogenetic Analysis ◽

New Species ◽

Sister Group ◽

Data Matrix ◽

Southern Brazil ◽

The Family ◽

First Time ◽

A New Species ◽

Transformation Series

A phylogenetic analysis of the Mycetophiliformia (= Sciaroidea) was performed to determine the relationships among its families and to place the following genera of uncertain position in the system: Heterotricha, Ohakunea, Colonomyia, Freemanomyia, Rhynchoheterotricha, Chiletricha, Afrotricha, Anisotricha, Kenyatricha, Nepaletricha, Sciarosoma, Sciaropota, Insulatricha, Cabamofa, Rogambara, and Starkomyia. Eratomyia n. gen. is described based on a new species from Ecuador. Colonomyia brasiliana sp.n. and Colonomyia freemani sp.n. are described respectively from southern Brazil and Chile. The male of Cabamofa mira Jaschhof is described for the first time. A total of 64 terminal taxa and 137 transformation series (with 202 characters) were included in the data matrix, with a number of new features from thoracic morphology. Willi Hennig’s 1973 system for the higher Bibionomorpha was adopted using the name Mycetophiliformia for the Sciaroidea. The Mycetophiliformia are monophyletic. The family Cecidomyiidae appears as the sister group of the remaining Mycetophiliformia, followed by the Sciaridae. In the preferred topology, the Rangomaramidae appear as the group sister of a clade consisting of (Ditomyiidae + Bolitophilidae + Diadocidiidae + Keroplatidae) and of (Lygistorrhinidae + Mycetophilidae). The topology within the Rangomaramidae is (Chiletrichinae subfam. n. (Heterotrichinae subfam. n. ((Rangomaraminae + Ohakuneinae subfam. n.))). The Chiletrichinae include the genera Kenyatricha, Rhynchoheterotricha, Insulatricha, Chiletricha, and Eratomyia n. gen. Heterotrichinae and Rangomaraminae are monotypic. The subfamily Ohakuneinae includes Ohakunea, Colonomyia, Cabamofa, and Rogambara. The positions of Freemanomyia, Loicia, Taxicnemis, Sciaropota, Starkomyia, Anisotricha, Nepaletricha, and Sciarosoma are considered. Afrotricha might belong to the Sciaridae. The similarities used by many authors to gather the Sciaridae and Mycetophilidae in a clade are shown to be a combination of plesiomorphies and homoplasies.

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On the status of Suifunema peregrinatum (Carreno, 2017) n. comb. (Nematoda: Oxyuridomorpha: Thelastomatidae) and first record of the species for Japan

Zootaxa ◽

10.11646/zootaxa.4651.2.9 ◽

2019 ◽

Vol 4651 (2) ◽

pp. 351-365

Author(s):

JANS MORFFE ◽

RAMON A. CARRENO ◽

SOTA OZAWA ◽

RINA SRIWATI ◽

KOICHI HASEGAWA

Keyword(s):

Female Genital Tract ◽

First Record ◽

Phylogenetic Position ◽

Lsu Rdna ◽

Generic Diagnosis ◽

The Family ◽

The Status ◽

The Usa ◽

Type Population ◽

First Time

Blattophila peregrinata Carreno, 2017 (Nematoda: Oxyuridomorpha: Thelastomatidae) is proposed as a junior synonym of Suifunema peregrinatum (Carreno, 2017) n. comb., based on the revision of the type material of S. caudelli Chitwood, 1932, the type and only species of the genus. The revision permitted the emendation of some features of the original descriptions, namely the position of the nerve ring at level of the corpus instead the isthmus and the female genital tract didelphic-prodelphic instead didelphic-amphidelphic. The males of S. peregrinatum n. comb. are the only ones known for the genus. Thus, an amended generic diagnosis is given, including information on the males. Both S. peregrinatum n. comb. and S. caudelli differ by having a more slender body, a longer tail, and the vulva farther from the anterior end in the former. S. peregrinatum n. comb. is recorded for the first time from Pycnoscelus indicus Fabricius, 1775 (Blattodea: Blaberidae) from Japan. The specimens from Japan are morphologically consistent with other populations of the species from the USA and the Galapagos Islands of Ecuador. Only some morphometrics vary slightly, but these are within the range of the species. The phylogenetic position of the genus among the family Thelastomatidae is discussed, including sequences of the D2-D3 LSU rDNA of specimens from both the type population (Ohio, USA) and Japan.

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Early embryology of Vochysiaceae and some insights into its phylogeny and intrafamilial taxonomy

Phytotaxa ◽

10.11646/phytotaxa.443.3.1 ◽

2020 ◽

Vol 443 (3) ◽

pp. 211-257

Author(s):

RENATA CARMO-OLIVEIRA ◽

LUCIANA NASCIMENTO CUSTÓDIO ◽

BERTA LANGE DE MORRETES ◽

PAULO EUGÊNIO OLIVEIRA

Keyword(s):

Developmental Stages ◽

Embryo Sac ◽

Sister Group ◽

Molecular Data ◽

Phylogenetic Position ◽

Its Phylogeny ◽

The Family

Embryological data provides insights into the taxonomy and evolution of angiosperms. Vochysiaceae is a mostly Neotropical family whose phylogenetic position was greatly influenced by reconstructions based on molecular data, and despite its monosymmetric and oligostemonous flowers, was included as a sister group of polysymmetric and polystemonous Myrtaceae. However, molecular data has yet to resolve the relationships between the genera inside the family. We analysed the early embryology of some species of five out of the six generally accepted Neotropical genera using sequential histological analyses to compare the microsporogenesis and gametogenesis and megasporogenesis and gametogenesis between clades and with the embryology of the well-studied Myrtales. We observed some marked differences in timing and developmental stages, which somewhat corroborate the clades defined from molecular data. Multiple archesporium and embryo sacs, as well as megagametophyte maturation and fertilization long after anthesis, characterized the Qualea-Ruizteranea-Callisthene (QRC) clade, while single embryo sac mature at anthesis characterized the Vochysia-Salvertia (VS) clade. Tri-cellular pollen only occurred in Salvertia convallariodora. Seven of the eight main embryological features supported the Myrtales as present in Vochysiaceae and the remaining one, inner integument with two layers of cells, was observed in some Qualea. Thus, the studied Vochysiaceae embryology conforms very well within the order and only their strongly monosymmetric and oligostemonous flowers are less common among Myrtales.

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Phylogenetic position of Coronastrum ellipsoideum and description of Parachlorella hussii sp. nov.

Biologia ◽

10.2478/s11756-011-0056-8 ◽

2011 ◽

Vol 66 (4) ◽

Cited By ~ 14

Author(s):

Christina Bock ◽

Marie Pažoutová ◽

Lothar Krienitz

Keyword(s):

Molecular Data ◽

Phylogenetic Position ◽

Rrna Gene ◽

Combined Approach ◽

Molecular Analyses ◽

Phylogenetic Studies ◽

The Family ◽

Its Rrna Gene ◽

Molecular Phylogenetic ◽

First Time

AbstractFollowing traditional morphological concepts, the genus Coronastrum is considered to be a rare member of the Scenedesmaceae (Chorophyceae). This classification may be called into question when molecular data are taken into account as well. Recent molecular phylogenetic studies revealed the polyphyletic origin of the family Scenedesmaceae within the Chlorophyceae and Trebouxiophyceae. In a combined approach of morphological analyses, SSU/ITS rRNA gene phylogeny and comparison of the ITS secondary structure, we analysed the systematics of Coronastrum strains available in public strain collections. Our molecular analyses revealed a new subclade within the Chlorella clade of the Chlorellaceae consisting of Coronastrum ellipsoideum, two strains with Dictyosphaerium-like morphology and one strain which fits the description of the genus Parachlorella. Four additional strains formed together a new lineage within the genus Parachlorella in the Parachlorella clade of the Chlorellaceae. These strains differ from the already known Parachlorella species in complementary base changes within the ITS2 and are here described for the first time as Parachlorella hussii sp. nov.

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A revision of the genus Petta Malmgren, 1866 (Annelida: Pectinariidae), with two new species from deep waters of southeastern Australia, and comments on phylogeny of the family

Zootaxa ◽

10.11646/zootaxa.4614.2.3 ◽

2019 ◽

Vol 4614 (2) ◽

pp. 303

Author(s):

JINGHUAI ZHANG ◽

PAT HUTCHINGS ◽

ELENA KUPRIYANOVA

Keyword(s):

New Species ◽

Original Description ◽

Morphological Characters ◽

Type Locality ◽

Phylogenetic Position ◽

Lower Lip ◽

Southeastern Australia ◽

Deep Waters ◽

The Family ◽

One New Species

Petta Malmgren, 1866 is a small and poorly known genus of the annelid family Pectinariidae Quatrefages, 1866. Prior to this study, the genus comprised four species P. pusilla Malmgren, 1866 (type locality Gullmarsfjord, west coast of Sweden), P. assimilis McIntosh, 1885 (type locality between Prince Edward and Kerguelen Island, southern Indian Ocean), P. pellucida (Ehlers, 1887) (type locality Santarem Channel between Cay Sal Bank and Bahamas, Caribbean Sea) and P. tenuis Caullery, 1944 (type locality Sulu, Philippines, tropical Pacific Ocean), the two last ones were known only from the original description. We revised the genus by re-examining the types and providing updated illustrated re-descriptions of its species, except for P. assimilis of which the type material has been lost. Commonly used morphological characters of the genus are expanded to also include new ones such as the presence of pair of lateral ear-shaped lobes adjacent to dorsal base of cephalic veil, pair of ventral lappets on segment 1, pair of dorso-lateral pads on segment 5, large basal hump on branchiae, and a rounded anterior peg with a blunt tip and a longitudinal row of two major teeth on uncini. The type species P. pusilla is recognised as having four lappets on the anterior margins of cephalic veil and a large lower lip posterior to buccal cavity. Two species P. investigatoris n. sp. and P. williamsonae n. sp. are described from deep water off the coast of southeastern Australia and represent the first records of this genus in Australian waters. A phylogenetic position of one new species was assessed in the framework of a phylogeny based on a fragment of the mitochondrial cytochrome oxidase I gene (mtCOI). An updated taxonomic key to Pectinariidae genera and all species of Petta is given.

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A new predatory leech from Vietnam (Hirudinida : Arhynchobdellida : Salifidae): its phylogenetic position with comments on the classification of the family

Invertebrate Systematics ◽

10.1071/is15008 ◽

2015 ◽

Vol 29 (5) ◽

pp. 473 ◽

Cited By ~ 1

Author(s):

Takafumi Nakano ◽

Son Truong Nguyen

Keyword(s):

Phylogenetic Relationships ◽

Phylogenetic Analyses ◽

Morphological Characteristics ◽

Molecular Data ◽

Phylogenetic Position ◽

12S Rrna ◽

The Family ◽

Morphological And Molecular Data ◽

First Time

The family Salifidae is a predaceous leech taxon in the suborder Erpobdelliformes. Although Salifidae is widely distributed in the African, Oriental, Indo-Malayan, Sino-Japanese and Australasian regions, the phylogenetic relationships of the family Salifidae have never been tested using molecular data obtained from leeches collected from the family distributional range. A salifid species was collected for the first time in Vietnam, and relevant morphological and molecular data are presented here. Because the Vietnamese salifid species possesses unique morphological characteristics among the known salifid species, this species is herein described as a new species, Salifa motokawai, sp. nov. Phylogenetic analyses based on nuclear 18S rRNA and histone H3, as well as mitochondrial cytochrome c oxidase subunit I, tRNACys, tRNAMet, 12S rRNA, tRNAVal, 16S rRNA, tRNALeu and NADH dehydrogenase subunit 1 markers demonstrate that the Vietnamese salifid species is a close congener with the African Salifa perspicax and the Malagasy Linta be. Furthermore, molecular data revealed non-monophyly of the Asian salifid leeches. According to the observed phylogenetic relationships and morphological characteristics of the Vietnamese Salifa motokawai, sp. nov., the current classification of salifid taxa should be revised.

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Thelopsis challenges the generic circumscription in the Gyalectaceae and brings new insights to the taxonomy of Ramonia

The Lichenologist ◽

10.1017/s002428292000050x ◽

2021 ◽

Vol 53 (1) ◽

pp. 45-61

Author(s):

Damien Ertz ◽

Neil Sanderson ◽

Marc Lebouvier

Keyword(s):

Phylogenetic Analyses ◽

Saint Paul ◽

Morphological Characters ◽

Systematic Position ◽

Sister Species ◽

Phylogenetic Position ◽

Generic Type ◽

The Family ◽

Fungal Dna ◽

First Time

AbstractThe genus Thelopsis was classified in the family Stictidaceae but its systematic position has never been investigated by molecular methods. In order to determine its family placement and to test its monophyly, fungal DNA of recent collections of Thelopsis specimens was sequenced. Phylogenetic analyses using nuLSU, RPB2 and mtSSU sequences reveal that members of Thelopsis form a monophyletic group within the genus Gyalecta as currently accepted. The placement of Thelopsis, including the generic type T. rubella, within the genus Gyalecta challenges the generic circumscription of this group because Thelopsis is well recognized by the combination of morphological characters: perithecioid ascomata, well-developed periphysoids, polysporous asci and small, few-septate ellipsoid-oblong ascospores. The sterile sorediate Opegrapha corticola is also placed in the Gyalectaceae as sister species to Thelopsis byssoidea + T. rubella. Ascomata of O. corticola are illustrated for the first time and support its placement in the genus Thelopsis. The hypothesis that O. corticola might represent the sorediate fertile morph of T. rubella is not confirmed because the species is phylogenetically and morphologically distinct. Thelopsis is recovered as polyphyletic, with T. melathelia being placed as sister species to Ramonia. The new combinations Thelopsis corticola (Coppins & P. James) Sanderson & Ertz comb. nov. and Ramonia melathelia (Nyl.) Ertz comb. nov. are introduced and a new species of Gyalecta, G. amsterdamensis Ertz, is described from Amsterdam and Saint-Paul Islands, characterized by a sterile thallus with discrete soralia. Petractis luetkemuelleri and P. nodispora are accommodated in the new genus Neopetractis, differing from the generic type (P. clausa) by having a different phylogenetic position and a different photobiont. Francisrosea bicolor Ertz & Sanderson gen. & sp. nov. is described for a sterile sorediate lichen somewhat similar to Opegrapha corticola but having an isolated phylogenetic position as sister to a clade including Gyalidea praetermissa and the genera Neopetractis and Ramonia. Gyalecta farlowii, G. nidarosiensis and G. carneola are placed in a molecular phylogeny for the first time. The taxonomic significance of morphological characters in Gyalectaceae is discussed.

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