Study of Marker Detection Performance on Deep Learning via Distortion and Rotation Augmentation of Training Data on Underwater Sonar Image

The classification of ultrasound (US) findings of pressure injury is important to select the appropriate treatment and care based on the state of the deep tissue, but it depends on the operator’s skill in image interpretation. Therefore, US for pressure injury is a procedure that can only be performed by a limited number of highly trained medical professionals. This study aimed to develop an automatic US image classification system for pressure injury based on deep learning that can be used by non-specialists who do not have a high skill in image interpretation. A total 787 training data were collected at two hospitals in Japan. The US images of pressure injuries were assessed using the deep learning-based classification tool according to the following visual evidence: unclear layer structure, cobblestone-like pattern, cloud-like pattern, and anechoic pattern. Thereafter, accuracy was assessed using two parameters: detection performance, and the value of the intersection over union (IoU) and DICE score. A total of 73 images were analyzed as test data. Of all 73 images with an unclear layer structure, 7 showed a cobblestone-like pattern, 14 showed a cloud-like pattern, and 15 showed an anechoic area. All four US findings showed a detection performance of 71.4–100%, with a mean value of 0.38–0.80 for IoU and 0.51–0.89 for the DICE score. The results show that US findings and deep learning-based classification can be used to detect deep tissue pressure injuries.

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A Method for Vehicle Detection in High-Resolution Satellite Images that Uses a Region-Based Object Detector and Unsupervised Domain Adaptation

Remote Sensing ◽

10.3390/rs12030575 ◽

2020 ◽

Vol 12 (3) ◽

pp. 575 ◽

Cited By ~ 11

Author(s):

Yohei Koga ◽

Hiroyuki Miyazaki ◽

Ryosuke Shibasaki

Keyword(s):

Deep Learning ◽

Domain Adaptation ◽

Vehicle Detection ◽

Detection Performance ◽

Training Data ◽

Detection Accuracy ◽

Target Area ◽

Target Domain ◽

Unsupervised Domain Adaptation ◽

High Resolution Satellite Images

Recently, object detectors based on deep learning have become widely used for vehicle detection and contributed to drastic improvement in performance measures. However, deep learning requires much training data, and detection performance notably degrades when the target area of vehicle detection (the target domain) is different from the training data (the source domain). To address this problem, we propose an unsupervised domain adaptation (DA) method that does not require labeled training data, and thus can maintain detection performance in the target domain at a low cost. We applied Correlation alignment (CORAL) DA and adversarial DA to our region-based vehicle detector and improved the detection accuracy by over 10% in the target domain. We further improved adversarial DA by utilizing the reconstruction loss to facilitate learning semantic features. Our proposed method achieved slightly better performance than the accuracy achieved with the labeled training data of the target domain. We demonstrated that our improved DA method could achieve almost the same level of accuracy at a lower cost than non-DA methods with a sufficient amount of labeled training data of the target domain.

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CNN performance dependence on linear image processing

Electronic Imaging ◽

10.2352/issn.2470-1173.2020.10.ipas-182 ◽

2020 ◽

Vol 2020 (10) ◽

pp. 310-1-310-7

Author(s):

Khalid Omer ◽

Luca Caucci ◽

Meredith Kupinski

Keyword(s):

Image Processing ◽

Texture Classification ◽

Full Rank ◽

Detection Performance ◽

Ideal Observer ◽

Training Data ◽

Image Texture ◽

Training Images ◽

Analytic Expressions ◽

Linear Compression

This work reports on convolutional neural network (CNN) performance on an image texture classification task as a function of linear image processing and number of training images. Detection performance of single and multi-layer CNNs (sCNN/mCNN) are compared to optimal observers. Performance is quantified by the area under the receiver operating characteristic (ROC) curve, also known as the AUC. For perfect detection AUC = 1.0 and AUC = 0.5 for guessing. The Ideal Observer (IO) maximizes AUC but is prohibitive in practice because it depends on high-dimensional image likelihoods. The IO performance is invariant to any fullrank, invertible linear image processing. This work demonstrates the existence of full-rank, invertible linear transforms that can degrade both sCNN and mCNN even in the limit of large quantities of training data. A subsequent invertible linear transform changes the images’ correlation structure again and can improve this AUC. Stationary textures sampled from zero mean and unequal covariance Gaussian distributions allow closed-form analytic expressions for the IO and optimal linear compression. Linear compression is a mitigation technique for high-dimension low sample size (HDLSS) applications. By definition, compression strictly decreases or maintains IO detection performance. For small quantities of training data, linear image compression prior to the sCNN architecture can increase AUC from 0.56 to 0.93. Results indicate an optimal compression ratio for CNN based on task difficulty, compression method, and number of training images.

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Siamese Reconstruction Network: Accurate Image Reconstruction from Human Brain Activity by Learning to Compare

Applied Sciences ◽

10.3390/app9224749 ◽

2019 ◽

Vol 9 (22) ◽

pp. 4749

Author(s):

Lingyun Jiang ◽

Kai Qiao ◽

Linyuan Wang ◽

Chi Zhang ◽

Jian Chen ◽

...

Keyword(s):

Deep Learning ◽

Human Brain ◽

Brain Activity ◽

Feature Space ◽

Training Data ◽

Reconstruction Method ◽

Learning Method ◽

Training Samples ◽

Visual Reconstruction ◽

Relationship Of

Decoding human brain activities, especially reconstructing human visual stimuli via functional magnetic resonance imaging (fMRI), has gained increasing attention in recent years. However, the high dimensionality and small quantity of fMRI data impose restrictions on satisfactory reconstruction, especially for the reconstruction method with deep learning requiring huge amounts of labelled samples. When compared with the deep learning method, humans can recognize a new image because our human visual system is naturally capable of extracting features from any object and comparing them. Inspired by this visual mechanism, we introduced the mechanism of comparison into deep learning method to realize better visual reconstruction by making full use of each sample and the relationship of the sample pair by learning to compare. In this way, we proposed a Siamese reconstruction network (SRN) method. By using the SRN, we improved upon the satisfying results on two fMRI recording datasets, providing 72.5% accuracy on the digit dataset and 44.6% accuracy on the character dataset. Essentially, this manner can increase the training data about from n samples to 2n sample pairs, which takes full advantage of the limited quantity of training samples. The SRN learns to converge sample pairs of the same class or disperse sample pairs of different class in feature space.

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Domain randomization-enhanced deep learning models for bird detection

Scientific Reports ◽

10.1038/s41598-020-80101-x ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Xin Mao ◽

Jun Kang Chow ◽

Pin Siang Tan ◽

Kuan-fu Liu ◽

Jimmy Wu ◽

...

Keyword(s):

Deep Learning ◽

Continuous Monitoring ◽

Bird Species ◽

Training Data ◽

Learning Models ◽

Fine Grained ◽

Bird Detection ◽

Relationship Of ◽

The Relationship

AbstractAutomatic bird detection in ornithological analyses is limited by the accuracy of existing models, due to the lack of training data and the difficulties in extracting the fine-grained features required to distinguish bird species. Here we apply the domain randomization strategy to enhance the accuracy of the deep learning models in bird detection. Trained with virtual birds of sufficient variations in different environments, the model tends to focus on the fine-grained features of birds and achieves higher accuracies. Based on the 100 terabytes of 2-month continuous monitoring data of egrets, our results cover the findings using conventional manual observations, e.g., vertical stratification of egrets according to body size, and also open up opportunities of long-term bird surveys requiring intensive monitoring that is impractical using conventional methods, e.g., the weather influences on egrets, and the relationship of the migration schedules between the great egrets and little egrets.

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U-Infuse: Democratization of Customizable Deep Learning for Object Detection

Sensors ◽

10.3390/s21082611 ◽

2021 ◽

Vol 21 (8) ◽

pp. 2611

Author(s):

Andrew Shepley ◽

Greg Falzon ◽

Christopher Lawson ◽

Paul Meek ◽

Paul Kwan

Keyword(s):

Deep Learning ◽

Intellectual Property ◽

Object Detection ◽

Image Data ◽

Learning Technologies ◽

Training Data ◽

Learning Models ◽

Ecological Data ◽

Single Class ◽

Large Numbers

Image data is one of the primary sources of ecological data used in biodiversity conservation and management worldwide. However, classifying and interpreting large numbers of images is time and resource expensive, particularly in the context of camera trapping. Deep learning models have been used to achieve this task but are often not suited to specific applications due to their inability to generalise to new environments and inconsistent performance. Models need to be developed for specific species cohorts and environments, but the technical skills required to achieve this are a key barrier to the accessibility of this technology to ecologists. Thus, there is a strong need to democratize access to deep learning technologies by providing an easy-to-use software application allowing non-technical users to train custom object detectors. U-Infuse addresses this issue by providing ecologists with the ability to train customised models using publicly available images and/or their own images without specific technical expertise. Auto-annotation and annotation editing functionalities minimize the constraints of manually annotating and pre-processing large numbers of images. U-Infuse is a free and open-source software solution that supports both multiclass and single class training and object detection, allowing ecologists to access deep learning technologies usually only available to computer scientists, on their own device, customised for their application, without sharing intellectual property or sensitive data. It provides ecological practitioners with the ability to (i) easily achieve object detection within a user-friendly GUI, generating a species distribution report, and other useful statistics, (ii) custom train deep learning models using publicly available and custom training data, (iii) achieve supervised auto-annotation of images for further training, with the benefit of editing annotations to ensure quality datasets. Broad adoption of U-Infuse by ecological practitioners will improve ecological image analysis and processing by allowing significantly more image data to be processed with minimal expenditure of time and resources, particularly for camera trap images. Ease of training and use of transfer learning means domain-specific models can be trained rapidly, and frequently updated without the need for computer science expertise, or data sharing, protecting intellectual property and privacy.

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Deep Learning-Based Differentiation between Mucinous Cystic Neoplasm and Serous Cystic Neoplasm in the Pancreas Using Endoscopic Ultrasonography

Diagnostics ◽

10.3390/diagnostics11061052 ◽

2021 ◽

Vol 11 (6) ◽

pp. 1052

Author(s):

Leang Sim Nguon ◽

Kangwon Seo ◽

Jung-Hyun Lim ◽

Tae-Jun Song ◽

Sung-Hyun Cho ◽

...

Keyword(s):

Decision Making ◽

Deep Learning ◽

Network Model ◽

Endoscopic Ultrasonography ◽

Data Augmentation ◽

Clinical Information ◽

Training Data ◽

Fine Tuning ◽

Cystic Neoplasm ◽

Cystic Neoplasms

Mucinous cystic neoplasms (MCN) and serous cystic neoplasms (SCN) account for a large portion of solitary pancreatic cystic neoplasms (PCN). In this study we implemented a convolutional neural network (CNN) model using ResNet50 to differentiate between MCN and SCN. The training data were collected retrospectively from 59 MCN and 49 SCN patients from two different hospitals. Data augmentation was used to enhance the size and quality of training datasets. Fine-tuning training approaches were utilized by adopting the pre-trained model from transfer learning while training selected layers. Testing of the network was conducted by varying the endoscopic ultrasonography (EUS) image sizes and positions to evaluate the network performance for differentiation. The proposed network model achieved up to 82.75% accuracy and a 0.88 (95% CI: 0.817–0.930) area under curve (AUC) score. The performance of the implemented deep learning networks in decision-making using only EUS images is comparable to that of traditional manual decision-making using EUS images along with supporting clinical information. Gradient-weighted class activation mapping (Grad-CAM) confirmed that the network model learned the features from the cyst region accurately. This study proves the feasibility of diagnosing MCN and SCN using a deep learning network model. Further improvement using more datasets is needed.

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Unsupervised content-preserving transformation for optical microscopy

Light Science & Applications ◽

10.1038/s41377-021-00484-y ◽

2021 ◽

Vol 10 (1) ◽

Cited By ~ 1

Author(s):

Xinyang Li ◽

Guoxun Zhang ◽

Hui Qiao ◽

Feng Bao ◽

Yue Deng ◽

...

Keyword(s):

Deep Learning ◽

Optical Microscopy ◽

Training Data ◽

Fluorescence Labeling ◽

Imaging Data ◽

Image Transformation ◽

General Applicability ◽

Data Annotation ◽

Biomedical Image ◽

Wide Range

AbstractThe development of deep learning and open access to a substantial collection of imaging data together provide a potential solution for computational image transformation, which is gradually changing the landscape of optical imaging and biomedical research. However, current implementations of deep learning usually operate in a supervised manner, and their reliance on laborious and error-prone data annotation procedures remains a barrier to more general applicability. Here, we propose an unsupervised image transformation to facilitate the utilization of deep learning for optical microscopy, even in some cases in which supervised models cannot be applied. Through the introduction of a saliency constraint, the unsupervised model, named Unsupervised content-preserving Transformation for Optical Microscopy (UTOM), can learn the mapping between two image domains without requiring paired training data while avoiding distortions of the image content. UTOM shows promising performance in a wide range of biomedical image transformation tasks, including in silico histological staining, fluorescence image restoration, and virtual fluorescence labeling. Quantitative evaluations reveal that UTOM achieves stable and high-fidelity image transformations across different imaging conditions and modalities. We anticipate that our framework will encourage a paradigm shift in training neural networks and enable more applications of artificial intelligence in biomedical imaging.

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