phase dependence
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Author(s):  
Tian-Jiao Shao ◽  
Fang Hu ◽  
Hong-Bo Chen

Abstract High-order harmonic generation (HHG) in ferroelectric lithium niobate (LiNbO$_{3}$) is investigated theoretically by solving the semi-conductor Bloch equations. Because of the spontaneous polarization, even-order harmonics are produced in the HHG spectra of the LiNbO$_{3}$ crystal driven by a monochromatic multi-cycle 3300-nm laser. Our numerical calculation shows that they are originated from the suppression of one half-optical cycle HHG process in each cycle of the driving field due to the spontaneous polarization. We also illustrate that the spontaneous polarization will increase the harmonic yield and extend the maximally attainable cutoff energy at the same time. We further report that the carrier-envelope phase dependence of HHG spectra changes from a minimum period of $\pi$ rad to 2$\pi$ rad when the laser polarization direction is parallel/anti-parallel to the spontaneous polarization direction in LiNbO$_{3}$ crystal. This is promising to be utilized as an isolated attosecond pulse (IAP) gating mechanism. Moreover, the two-color relative phase dependence of HHG in LiNbO$_{3}$ is also investigated and shows broken inversion-symmetry.


Author(s):  
Florent Laydevant ◽  
Mahsa Mahabadi ◽  
Pierre Llido ◽  
Jean-Philippe Bourgouin ◽  
Laurence Caron ◽  
...  

2021 ◽  
Vol 119 (12) ◽  
pp. 129901
Author(s):  
Shelby S. Fields ◽  
David H. Olson ◽  
Samantha T. Jaszewski ◽  
Chris M. Fancher ◽  
Sean W. Smith ◽  
...  

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Fella Hamitouche ◽  
Jean-Charles Gaillard ◽  
Philippe Schmitt ◽  
Jean Armengaud ◽  
Catherine Duport ◽  
...  

Abstract Background Bacillus cereus is a notorious foodborne pathogen, which can grow under anoxic conditions. Anoxic growth is supported by endogenous redox metabolism, for which the thiol redox proteome serves as an interface. Here, we studied the cysteine (Cys) proteome dynamics of B. cereus ATCC 14579 cells grown under fermentative anoxic conditions. We used a quantitative thiol trapping method combined with proteomics profiling. Results In total, we identified 153 reactive Cys residues in 117 proteins participating in various cellular processes and metabolic pathways, including translation, carbohydrate metabolism, and stress response. Of these reactive Cys, 72 were detected as reduced Cys. The B. cereus Cys proteome evolved during growth both in terms of the number of reduced Cys and the Cys-containing proteins identified, reflecting its growth-phase-dependence. Interestingly, the reduced status of the B. cereus thiol proteome increased during growth, concomitantly to the decrease of extracellular oxidoreduction potential. Conclusions Taken together, our data show that the B. cereus Cys proteome during unstressed fermentative anaerobic growth is a dynamic entity and provide an important foundation for future redox proteomic studies in B. cereus and other organisms.


2021 ◽  
Vol 415 ◽  
pp. 128858
Author(s):  
Zequan Liu ◽  
Tao Ou ◽  
Minhua Su ◽  
Hairong Peng ◽  
Gang Song ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Carolyn Vitale ◽  
Tianhui Maria Ma ◽  
Janice Sim ◽  
Christopher Altheim ◽  
Erika Martinez-Nieves ◽  
...  

Bacterial infection and thrombosis are highly correlated, especially in patients with indwelling medical devices. Coagulase-negative staphylococci, typified by Staphylococcus epidermidis, are a common cause of medical device infections owing to their biofilm forming capacity which provides protection from antibiotics and host immune response. Attention has been drawn to the interaction between S. epidermidis and host proteins, specifically fibrinogen. However, little is known regarding the impact of the transition from planktonic to biofilm forming phenotype on this interaction. Here we investigate the growth phase dependence of bacteria-fibrinogen interaction and the resulting effect on fibrin clot formation, structure, and mechanics. Flow cytometry demonstrated growth phase dependent affinity for fibrinogen. To mimic intravascular device seeding, we quantified the adhesion of S. epidermidis to a fibrinogen coated surface under continuous flow conditions in vitro. The bacterial deposition rate onto fibrinogen was significantly greater for stationary (5,360 ± 1,776 cells/cm2s) versus exponential phase (2,212 ± 264, cells/cm2 s). Furthermore, the expression of sdrG–a cell surface adhesion protein with specificity for fibrinogen–was upregulated ∼twofold in the stationary versus the exponential phase. Rheometry and confocal microscopy demonstrated that stationary phase S. epidermidis slows clot formation and generates a more heterogeneous fibrin network structure with greater elasticity (G′ = 5.7 ± 1.0 Pa) compared to sterile fibrinogen (G′ = l.5 ± 0.2 Pa), while exponential phase cells had little effect. This work contributes to the current understanding of the growth phase dependent regulation of bacterial virulence factors and the correlation between bacterial infection and thrombosis.


2021 ◽  
Vol 9 ◽  
Author(s):  
André D. Bandrauk ◽  
Szczepan Chelkowski ◽  
Kai-Jun Yuan

We theoretically study pulse phase and helicity effects on ultrafast magnetic field generation in intense bichromatic circularly polarized laser fields. Simulations are performed on the aligned molecular ion H2+ from numerical solutions of corresponding time-dependent Schrödinger equations. We demonstrate how electron coherent resonant excitation influences the phase and helicity of the optically induced magnetic field generation. The dependence of the generated magnetic field on the pulse phase arises from the interference effect between multiple excitation and ionization pathways, and is shown to be sensitive to molecular alignment and laser polarization. Molecular resonant excitation induces coherent ring electron currents, giving enhancement or suppression of the phase dependence. Pulse helicity effects control laser-induced electron dynamics in bichromatic circular polarization excitation. These phenomena are demonstrated by a molecular attosecond photoionization model and coherent electron current theory. The results offer a guiding principle for generating ultrafast magnetic fields and for studying coherent electron dynamics in complex molecular systems.


2021 ◽  
Vol 528 ◽  
pp. 167802
Author(s):  
Qianke Zhu ◽  
Zhe Chen ◽  
Qiushu Li ◽  
Lu Guo ◽  
Ziteng Zhu ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
Anthony L. Hessel ◽  
Jenna A. Monroy ◽  
Kiisa C. Nishikawa

The sliding filament–swinging cross bridge theory of skeletal muscle contraction provides a reasonable description of muscle properties during isometric contractions at or near maximum isometric force. However, it fails to predict muscle force during dynamic length changes, implying that the model is not complete. Mounting evidence suggests that, along with cross bridges, a Ca2+-sensitive viscoelastic element, likely the titin protein, contributes to muscle force and work. The purpose of this study was to develop a multi-level approach deploying stretch-shortening cycles (SSCs) to test the hypothesis that, along with cross bridges, Ca2+-sensitive viscoelastic elements in sarcomeres contribute to force and work. Using whole soleus muscles from wild type and mdm mice, which carry a small deletion in the N2A region of titin, we measured the activation- and phase-dependence of enhanced force and work during SSCs with and without doublet stimuli. In wild type muscles, a doublet stimulus led to an increase in peak force and work per cycle, with the largest effects occurring for stimulation during the lengthening phase of SSCs. In contrast, mdm muscles showed neither doublet potentiation features, nor phase-dependence of activation. To further distinguish the contributions of cross bridge and non-cross bridge elements, we performed SSCs on permeabilized psoas fiber bundles activated to different levels using either [Ca2+] or [Ca2+] plus the myosin inhibitor 2,3-butanedione monoxime (BDM). Across activation levels ranging from 15 to 100% of maximum isometric force, peak force, and work per cycle were enhanced for fibers in [Ca2+] plus BDM compared to [Ca2+] alone at a corresponding activation level, suggesting a contribution from Ca2+-sensitive, non-cross bridge, viscoelastic elements. Taken together, our results suggest that a tunable viscoelastic element such as titin contributes to: (1) persistence of force at low [Ca2+] in doublet potentiation; (2) phase- and length-dependence of doublet potentiation observed in wild type muscles and the absence of these effects in mdm muscles; and (3) increased peak force and work per cycle in SSCs. We conclude that non-cross bridge viscoelastic elements, likely titin, contribute substantially to muscle force and work, as well as the phase-dependence of these quantities, during dynamic length changes.


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